View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16160_low_10 (Length: 327)
Name: NF16160_low_10
Description: NF16160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16160_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 14947368 - 14947081
Alignment:
| Q |
20 |
agatccaccaccaccactcactttaatctttaagcttagacacttaaccttattatcaaaagacataaagcttaaacttagacacttcaatgcattcaac |
119 |
Q |
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| T |
14947368 |
agatccaccaccaccactcactttaatctttagacttagacacttaaccttattatcaaaagacataaagcttaaacttagacatttaaatgcattcagc |
14947269 |
T |
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| Q |
120 |
ttccaattataattagaaatcaatcgctataacacaataccctgatctggaaataaaaataattgaacgggccattgattttcgcataagtaccatgatt |
219 |
Q |
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| T |
14947268 |
ttccaattataattaaaaatcaatcgctataagacaataccctgatctggaaataaaaataattgaacgggccattgattttcgcataagtgccatgatt |
14947169 |
T |
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| Q |
220 |
aaggaaattgaatgggagaataaggtcttgattttt-gcaaataaaagttgttaaatgccttccagaaacagttgaagctttacacca |
306 |
Q |
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| T |
14947168 |
aaggaaattgaatgggagaataaggtcctgatttttcgcaaataaaagttgttaaatgccttccaaaaacagttaaagctttacacca |
14947081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 303
Target Start/End: Original strand, 31807337 - 31807620
Alignment:
| Q |
20 |
agatccaccaccaccactcactttaatctttaagcttagacacttaaccttattatcaaaagacataaagcttaaacttagacacttcaatgcattcaac |
119 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
31807337 |
agatccaccaccacgactcactttaatctttagacttagacacttaaccttattatcaaaagacataaagtttaaacttagacacttaaatgcattcaac |
31807436 |
T |
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| Q |
120 |
ttccaattataattagaaatcaatcgctataacacaataccctgatctggaaataaaaataattgaacgggccattgattttcgcataagtaccatgatt |
219 |
Q |
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||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31807437 |
ttcgaattataattagaaatcaattgctaaaacacaataccctgatctggaaataaaaataattgaacgggccattgattttcgcataagtgacatgatt |
31807536 |
T |
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| Q |
220 |
aaggaaattgaatgggagaataaggtcttgatttttgcaaataaaagttgttaaatgccttccagaaacagttgaagctttaca |
303 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31807537 |
aaggaaattgaatgggagaataaggtactgattttcgcaaataaaagttgttaaatgccttccagaaacagttgaagttttaca |
31807620 |
T |
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