View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16160_low_11 (Length: 323)
Name: NF16160_low_11
Description: NF16160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16160_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 12 - 305
Target Start/End: Complemental strand, 8571958 - 8571665
Alignment:
| Q |
12 |
agcagagaaggaactcatacgaagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaagtgaaagatcaaat |
111 |
Q |
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| T |
8571958 |
agcagagaaggaactcatacgaagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaagtaaaagatcaaat |
8571859 |
T |
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| Q |
112 |
tggtagtttctattatttcccatctcttgcattccacaaagctgctggtggttttggaggaattagaattctaagtaggccaagaattcccgttcccttc |
211 |
Q |
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| T |
8571858 |
tggtagtttctattatttcccatctcttgcattccacaaagctgctggtggttttggaggaattagaattctaagtaggccaagaattcccgttcccttc |
8571759 |
T |
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| Q |
212 |
gatgatcccgctggtgattacactgtcctcattggagattggtacaagtccaaccacacggtaactaatcatttactatcttcatcatcatttt |
305 |
Q |
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| T |
8571758 |
gatgatcccgctggtgattacactgtcctcattggagattggtacaagtccaaccacacggtaactaatcatttactatcttcatcatcatttt |
8571665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 12 - 274
Target Start/End: Complemental strand, 53754570 - 53754308
Alignment:
| Q |
12 |
agcagagaaggaactcatacgaagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaagtgaaagatcaaat |
111 |
Q |
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| T |
53754570 |
agcagagaaggaactcattcgaagatggtgtttcgggaacaacatgccccatcccaccagggaggaacttcacatatattcttcaagtgaaggatcaaat |
53754471 |
T |
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| Q |
112 |
tggtagtttctattatttcccatctcttgcattccacaaagctgctggtggttttggaggaattagaattctaagtaggccaagaattcccgttcccttc |
211 |
Q |
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| T |
53754470 |
tggaagcttttactactttccatctctagcatttcaaaaagcagctggtggttttggaggcattaggatactcagtagacctagaattccagtccctttc |
53754371 |
T |
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| Q |
212 |
gatgatcccgctggtgattacactgtcctcattggagattggtacaagtccaaccacacggta |
274 |
Q |
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||| || ||||| |||||||||||||| ||||| |||||||||||||||||||| |||||| |
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| T |
53754370 |
cctgaaccagctggagattacactgtccttattggtgattggtacaagtccaaccatacggta |
53754308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 33 - 169
Target Start/End: Complemental strand, 28940921 - 28940785
Alignment:
| Q |
33 |
aagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaagtgaaagatcaaattggtagtttctattatttccc |
132 |
Q |
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| T |
28940921 |
aagatggagtttatggtacaacatgtcccatccctcctgggaagaacttcacatacacacttcaagtcaaagatcaaattggaagcttcttctattttcc |
28940822 |
T |
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| Q |
133 |
atctcttgcattccacaaagctgctggtggttttgga |
169 |
Q |
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| T |
28940821 |
atctcttgcttttcacaaggcagctggtggttttgga |
28940785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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