View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16160_low_13 (Length: 268)

Name: NF16160_low_13
Description: NF16160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16160_low_13
NF16160_low_13
[»] chr5 (6 HSPs)
chr5 (1-253)||(37081517-37081769)
chr5 (19-253)||(37071784-37072018)
chr5 (23-230)||(36934764-36934971)
chr5 (19-243)||(36952217-36952441)
chr5 (23-230)||(36963648-36963855)
chr5 (23-246)||(36946309-36946532)
[»] chr2 (1 HSPs)
chr2 (17-230)||(12495592-12495805)


Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 37081517 - 37081769
Alignment:
Q  1 acatagtttttcaatcttttagtgtactctaaccatgccgtttttatatcatgccgttcaaaattagcataagctgccaatagcatttcaacgattgaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37081517 acatagtttttcaatcttttagtgtactctaaccatgccgtttttatatcatgccgttcaaaattagcataagctgccaatagcttttcaacgattgaga 37081616  T
Q  101 tgtgtccacctcttgcagcaacatgtaacgcactatcgttgttttcattaacctcgaacaaaagttttggagcatgttcaattacaagactcacaatctt 200  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37081617 tgtgtccacctcttgcagcaatatgtaacgcactctcgttgttttcattaacctcgaacaaaagttttggagcatgttcaattacaagactcacaatctt 37081716  T
Q  201 atcattgccataccaagctgatatatgtaggacagtgtttttcgtatgtgtct 253  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37081717 atcattgccataccaagctgatatatgtaggacagtgttttttgtatgtgtct 37081769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 37071784 - 37072018
Alignment:
Q  19 ttagtgtactctaaccatgccgtttttatatcatgccgttcaaaattagcataagctgccaatagcatttcaacgattgagatgtgtccacctcttgcag 118  Q
    |||||||| ||||||||||| ||| |||||||| ||||||||| ||||||||| |||  ||||||| |||||||||||||||||||||||| ||||||||    
T  37071784 ttagtgtattctaaccatgctgttcttatatcacgccgttcaatattagcatatgctttcaatagcttttcaacgattgagatgtgtccacatcttgcag 37071883  T
Q  119 caacatgtaacgcactatcgttgttttcattaacctcgaacaaaagttttggagcatgttcaattacaagactcacaatcttatcattgccataccaagc 218  Q
    ||| |||||||||||| || ||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |  |||    
T  37071884 caatatgtaacgcactctcattgttttcattaaactcgaacaaaagtgttggagcatgttcaactacaagactcacaatcttatcattgccattctgagc 37071983  T
Q  219 tgatatatgtaggacagtgtttttcgtatgtgtct 253  Q
    || ||||||||| ||||||||||| ||| ||||||    
T  37071984 tgctatatgtagcacagtgtttttggtaggtgtct 37072018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 23 - 230
Target Start/End: Complemental strand, 36934971 - 36934764
Alignment:
Q  23 tgtactctaaccatgccgtttttatatcatgccgttcaaaattagcataagctgccaatagcatttcaacgattgagatgtgtccacctcttgcagcaac 122  Q
    ||||||||||||||||| ||||||| |||  |||||||| ||||||||||  ||| |||||| |||||||| ||||||||||||||  ||| ||||||||    
T  36934971 tgtactctaaccatgccatttttatctcactccgttcaatattagcataacttgctaatagcttttcaacggttgagatgtgtccatatctagcagcaac 36934872  T
Q  123 atgtaacgcactatcgttgttttcattaacctcgaacaaaagttttggagcatgttcaattacaagactcacaatcttatcattgccataccaagctgat 222  Q
    |||||| |||||||| |||||||| |||| || |||||||||||||||||||||||||||||||||| ||||||| | || ||| ||||||||| |||      
T  36934871 atgtaaggcactatcattgttttcgttaaacttgaacaaaagttttggagcatgttcaattacaagattcacaatgtcattattaccataccaaactgca 36934772  T
Q  223 atatgtag 230  Q
    ||||||||    
T  36934771 atatgtag 36934764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 36952441 - 36952217
Alignment:
Q  19 ttagtgtactctaaccatgccgtttttatatcatgccgttcaaaattagcataagctgccaatagcatttcaacgattgagatgtgtccacctcttgcag 118  Q
    |||||||| |||||||||||| ||||||||||||||||||||| ||||||||||  ||| |||||| ||| |||| ||  ||||||||||||||||||||    
T  36952441 ttagtgtattctaaccatgccatttttatatcatgccgttcaatattagcataacttgctaatagctttttaacggtttggatgtgtccacctcttgcag 36952342  T
Q  119 caacatgtaacgcactatcgttgttttcattaacctcgaacaaaagttttggagcatgttcaattacaagactcacaatcttatcattgccataccaagc 218  Q
    |||||||||| |||||||| |||||||  ||||    |||||||||||||||||||||||||| ||||||| |||||||   || ||| |||| ||||||    
T  36952341 caacatgtaaggcactatcattgtttttgttaaatgtgaacaaaagttttggagcatgttcaactacaagattcacaatggcattattaccattccaagc 36952242  T
Q  219 tgatatatgtaggacagtgtttttc 243  Q
    ||  |||||||| || || ||||||    
T  36952241 tgcaatatgtagcacggtatttttc 36952217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 23 - 230
Target Start/End: Complemental strand, 36963855 - 36963648
Alignment:
Q  23 tgtactctaaccatgccgtttttatatcatgccgttcaaaattagcataagctgccaatagcatttcaacgattgagatgtgtccacctcttgcagcaac 122  Q
    |||| |||||||||||| ||||||||||| ||||||||| ||||| ||||  ||| |||||  ||| |||| ||||||||||||||||||||||||||||    
T  36963855 tgtattctaaccatgccatttttatatcacgccgttcaatattagtataacttgctaatagtgttttaacggttgagatgtgtccacctcttgcagcaac 36963756  T
Q  123 atgtaacgcactatcgttgttttcattaacctcgaacaaaagttttggagcatgttcaattacaagactcacaatcttatcattgccataccaagctgat 222  Q
    |||||| |  ||||| |||||||  || |    |||||||||||||||||||||||||||||||||| ||||||| | ||| || |||||| ||||||      
T  36963755 atgtaaggggctatcattgtttttgttgaatgtgaacaaaagttttggagcatgttcaattacaagattcacaatgtcatctttaccatacgaagctgca 36963656  T
Q  223 atatgtag 230  Q
    ||||||||    
T  36963655 atatgtag 36963648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 246
Target Start/End: Complemental strand, 36946532 - 36946309
Alignment:
Q  23 tgtactctaaccatgccgtttttatatcatgccgttcaaaattagcataagctgccaatagcatttcaacgattgagatgtgtccacctcttgcagcaac 122  Q
    |||| |||||||||||| ||||||||||| ||||||||| ||||| ||||  ||| |||||  ||| |||| ||||||||||||||||||||||||||||    
T  36946532 tgtattctaaccatgccatttttatatcacgccgttcaatattagtataacttgctaatagtgttttaacggttgagatgtgtccacctcttgcagcaac 36946433  T
Q  123 atgtaacgcactatcgttgttttcattaacctcgaacaaaagttttggagcatgttcaattacaagactcacaatcttatcattgccataccaagctgat 222  Q
    |||||| |  ||||| |||||||  || |    ||||||||||||||||| |||||||||||||||| ||||||| | || ||| |||||| ||||||      
T  36946432 atgtaaggggctatcattgtttttgttgaatgtgaacaaaagttttggagaatgttcaattacaagattcacaatgtcattattaccatacgaagctgca 36946333  T
Q  223 atatgtaggacagtgtttttcgta 246  Q
    |||||||  || || |||||||||    
T  36946332 atatgtaacactgtatttttcgta 36946309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 12495592 - 12495805
Alignment:
Q  17 ttttagtgtactctaaccatgccgtttttatatcatgccgttcaaaattagcataagctgccaatagcatttcaacgattgagatgtgtccacctcttgc 116  Q
    |||||||||| |||||||||||| ||||||||||||||||||||| |||  |||||  ||| | |||| |||||||| |||| |||||||||||  ||||    
T  12495592 ttttagtgtattctaaccatgccatttttatatcatgccgttcaatattcacataatttgctagtagcttttcaacggttgaaatgtgtccaccatttgc 12495691  T
Q  117 agcaacatgtaacgcactatcgttgttttcattaacctcgaacaaaagttttggagcatgttcaattacaagactcacaatcttatcattgccataccaa 216  Q
    ||||||||| || |||||||| |||||||  ||||  |  ||||||||||||||| || |||||||||||||| ||||||| | || ||| |||||||||    
T  12495692 agcaacatgaaatgcactatcattgtttttgttaaatttaaacaaaagttttggaacacgttcaattacaagattcacaatttcattattaccataccaa 12495791  T
Q  217 gctgatatatgtag 230  Q
    ||||  ||||||||    
T  12495792 gctgcaatatgtag 12495805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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