View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16160_low_2 (Length: 599)
Name: NF16160_low_2
Description: NF16160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16160_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 17 - 589
Target Start/End: Original strand, 3557605 - 3558177
Alignment:
| Q |
17 |
agtctcaaagtcaatggattctgataaaggaacacaaattctaagaccctttgtgaaaaatggttttagagtcattgcaattgaacctgatttcaactat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3557605 |
agtctcaaagtcaatggattctgataaaggaactcaaattctaagaccctttgtgaaaaatggttttagagtcattgcaattgaacctgatttcaactat |
3557704 |
T |
|
| Q |
117 |
atattcaaaaacactcatgcagaatcatggtttaatcgtttaatacaagggaacgtaaatccaggtgaaatttcattaggccaaaacctctcaaatttac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3557705 |
atattcaaaaacactcatgcagaatcatggtttaatcgtttaatacaagggaatgtaaatccaggtgaaatttcattaggccaaaacctctcaaatttac |
3557804 |
T |
|
| Q |
217 |
ttagactttctctcttgtataaatttggaggcatttatatagatgctgatataataatcatgaagagtttttcaaaattcagaaacactattggagcaca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3557805 |
ttagactttctctcttgtataaatttggaggcatttatatagatgctgatataataatcatgaagagtttttcaaaattcagaaacactattggagcaca |
3557904 |
T |
|
| Q |
317 |
gaacattgatgtgaaaacaaagaaatggagtcgtttgaacaatgctgtgttgatatttgataaaaaacaccctttgcttttgaagtttattgaggaattt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3557905 |
gaacattgatgtgaaaacaaagaaatggagtcgtttgaacaatgctgtgttgatatttgataaaaaacaccctttgcttttgaagtttattgaggaattt |
3558004 |
T |
|
| Q |
417 |
gcacttacttttgatggtaacaagtgggggcataatggtccttatttaacatctagagtggtttctagagtaagtggaagagaagggtataatttcagtg |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3558005 |
gcacttacttttgatggtaacaagtgggggcataatggtccttatttaatatctagagtggtttctagagtaagtggaagagaagggtataatttcagtg |
3558104 |
T |
|
| Q |
517 |
tggttccaccttctgcattttatcctgtggattggagaggtataaagagtttgtttagaggacctagtgatga |
589 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3558105 |
tggttccaccttctgcattttatcctgtggattggagaggtataaagagtttgtttagaggacctggtgatga |
3558177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University