View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16160_low_3 (Length: 551)
Name: NF16160_low_3
Description: NF16160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16160_low_3 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 490; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 10 - 534
Target Start/End: Complemental strand, 566852 - 566327
Alignment:
| Q |
10 |
acatcatcaagaaaacatctcctatttgatcaggacatatgtactagtgtcacaagagcatcccaagttagctaaccgatttgttgtcatgttatgctcc |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
566852 |
acatcatcaagaaaacatctcctatttgatcaggacatatgtactagtgtcacaagagcatcccaagttagctaacctatttgttgtcatgttatgctcc |
566753 |
T |
|
| Q |
110 |
aaataggaatgaaattcttccatcaaacgtgaactacatgttccttccacccgtaaatttagaagatttaccgcaagatattcaccctgcacttaaagtt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
566752 |
aaataggaatgaaattcttccatcaaacgtgaactacatgttccttccacccgtaaatttagaagatttaccgcaagatattcaccctgcccttaaagtt |
566653 |
T |
|
| Q |
210 |
caactctaatccttcaatttacgaagcattgaacacgttaatttctaatgcaaaccttcccgtgcttgttgctgacgg-ttaaacaatgaagtgttacga |
308 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
566652 |
caactctaatcctttaatttacgaagcattgaacacgttaaattctaatgcaaactttcccgtgcttgttgctgacggtttaaacaatgaagtgttacga |
566553 |
T |
|
| Q |
309 |
ttagccaagaaactagatattttggcctattcatattttccatccacaaccgtgttactatcactttgttaatttgctttcttcaaatatagagagaaca |
408 |
Q |
| |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
566552 |
ttagctaagaaactagatattttagcctattcatattttccatccacaaccgtgttactatcactttgttaatttgctttcttcaaatatagagagaaca |
566453 |
T |
|
| Q |
409 |
atttcttccacatacaaagacctattagaaccattagcgactccttattgcatacctatatattctatttagctgatgggcaccacaagttgaaattctt |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
566452 |
atttcttccacatacaaagacctattagaaccattagcgactccttattgcatacctatatattctatttagctgatgggcaccacaagttgaaattctt |
566353 |
T |
|
| Q |
509 |
ggtcatagttcaattgatggattttt |
534 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
566352 |
ggtcatagttcaattgatggattttt |
566327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 534
Target Start/End: Complemental strand, 548817 - 548767
Alignment:
| Q |
484 |
atgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt |
534 |
Q |
| |
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|||||| |||||||||||||||||| |||||||||||| || ||| ||||| |
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| T |
548817 |
atgggctccacaagttgaaattcttagtcatagttcaactggtggtttttt |
548767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 534
Target Start/End: Complemental strand, 894569 - 894519
Alignment:
| Q |
484 |
atgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt |
534 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||||| ||| ||||| |
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|
| T |
894569 |
atgggcaccacaagttgagattcttggtcatggatcaattggtggtttttt |
894519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 534
Target Start/End: Original strand, 906074 - 906124
Alignment:
| Q |
484 |
atgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt |
534 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||||| ||| ||||| |
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| T |
906074 |
atgggcaccacaagttgagattcttggtcatggatcaattggtgggttttt |
906124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 534
Target Start/End: Original strand, 23423787 - 23423837
Alignment:
| Q |
484 |
atgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt |
534 |
Q |
| |
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|||||| |||||||||||||||||| |||||||||||| || ||| ||||| |
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| T |
23423787 |
atgggctccacaagttgaaattcttagtcatagttcaactggtggtttttt |
23423837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 7e-38; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 119 - 464
Target Start/End: Complemental strand, 876410 - 876054
Alignment:
| Q |
119 |
tgaaattcttccatcaaacgtgaactacatgttccttccacccgtaaatttagaagatttaccgcaagatattcaccctgcacttaaagttcaac----- |
213 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||| |||||||| ||||||||||||| ||||| |||||||||||||||| || |||||| || |
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| T |
876410 |
tgaaactcttccatcaaacataaactacatgtttcttccaccgataaatttagaagacttaccaaaagatattcaccctgcgctcaaagttgaagccact |
876311 |
T |
|
| Q |
214 |
---------tctaatccttcaatttacgaagcattgaacacgttaatttctaatgcaaaccttcccgtgcttgttgctgacggttaaacaat-gaagtgt |
303 |
Q |
| |
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|||| |||||| ||||| || |||||| |||||||| ||||| | |||| ||| || | || || |||| |||| || || ||||||| |
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| T |
876310 |
ttacaccgttctattccttcgatttatgatgcattggacacgttacattctagttcaaaacttgtcgcggttatttctgatggtttaataaacgaagtgt |
876211 |
T |
|
| Q |
304 |
tacgattagccaagaaactagatattttggcctattcatattttccatccacaaccgtgttactatcactttgttaatttgctttcttcaaatatagaga |
403 |
Q |
| |
|
|||||||| |||||||||| |||||||| ||||| ||||||||||| ||||||||| |||||||||| ||||| ||||| |||||||| | |||| | |
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| T |
876210 |
tacgattaaccaagaaactcgatattttagcctactcatattttccttccacaaccatgttactatcgctttg----tttgcattcttcaagtctagaca |
876115 |
T |
|
| Q |
404 |
gaacaatttcttccacatacaaagacctattagaaccattagcgactccttattgcatacc |
464 |
Q |
| |
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||||||||||||| || | |||||||||||||||||||||| || |||| ||||||||| |
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| T |
876114 |
aaacaatttcttccgcaaataaagacctattagaaccattagagattcctggttgcatacc |
876054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 125 - 445
Target Start/End: Complemental strand, 845954 - 845623
Alignment:
| Q |
125 |
tcttccatcaaacgtgaactacatgttccttccacccgtaaatttagaagatttaccgcaagatattcaccctgcacttaaagttcaac----------- |
213 |
Q |
| |
|
||||||||||||| | ||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||| || |||||| || |
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|
| T |
845954 |
tcttccatcaaacataaactacatgtttcttccaccaataaatttagaagatttaccaaaagatattcaccctgcgctcaaagttgaagccactttacac |
845855 |
T |
|
| Q |
214 |
---tctaatccttcaatttacgaagcattgaacacgttaatttctaatgcaaaccttcccgtgcttgttgctgacggttaaacaat-gaagtgttacgat |
309 |
Q |
| |
|
|||| |||||| ||||| || | ||||||||||||| ||||| | |||| ||| | | || || |||| |||| || || ||||||||||||| |
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|
| T |
845854 |
cgttctattccttcgatttatgatgtattgaacacgttacattctagttcaaaacttgttgcggttatttctgatggtttaataaacgaagtgttacgat |
845755 |
T |
|
| Q |
310 |
tagccaagaaactagatattttggcctattcatattttccatccacaaccgtgttactatcactttgttaatttgctttcttcaaatatagagagaacaa |
409 |
Q |
| |
|
|| |||||||||| |||||||| ||||| ||||||||||| ||||||||| |||||||||| ||||| ||||| |||||||||| |||| | ||||| |
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|
| T |
845754 |
taaccaagaaactcgatattttagcctactcatattttccttccacaaccatgttactatcgctttg----tttgcattcttcaaatctagacaaaacaa |
845659 |
T |
|
| Q |
410 |
tttcttccacatacaaagacctattagaaccattag |
445 |
Q |
| |
|
|||||||| || | |||||||||||||||||||||| |
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| T |
845658 |
tttcttccgcaaataaagacctattagaaccattag |
845623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 485 - 534
Target Start/End: Complemental strand, 845092 - 845043
Alignment:
| Q |
485 |
tgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt |
534 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
845092 |
tgggcaccacaaattgaaattcttggtcatagttcaattggtgggttttt |
845043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 485 - 534
Target Start/End: Complemental strand, 870376 - 870327
Alignment:
| Q |
485 |
tgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt |
534 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
870376 |
tgggcaccacaaattgaaattcttggtcatagttcaattggtgggttttt |
870327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 534
Target Start/End: Complemental strand, 8294521 - 8294471
Alignment:
| Q |
484 |
atgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt |
534 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||||| ||| ||||| |
|
|
| T |
8294521 |
atgggcaccacaagttgagattcttggtcatggatcaattggtgggttttt |
8294471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 534
Target Start/End: Original strand, 33257234 - 33257284
Alignment:
| Q |
484 |
atgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt |
534 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||||| ||| ||||| |
|
|
| T |
33257234 |
atgggcaccacaagttgagattcttggtcatggatcaattggtggtttttt |
33257284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 534
Target Start/End: Original strand, 1352 - 1402
Alignment:
| Q |
484 |
atgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt |
534 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||||| ||| ||||| |
|
|
| T |
1352 |
atgggcaccacaagttgagattcttggtcatggatcaattggtggtttttt |
1402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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