View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16160_low_6 (Length: 491)
Name: NF16160_low_6
Description: NF16160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16160_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 10 - 475
Target Start/End: Complemental strand, 8571676 - 8571211
Alignment:
| Q |
10 |
catcatcattttcagaccatgattttcattttcagtaaaattgattgtattgtattatgtgacaggatttgaaggcccaacttgataacggaaagaagtt |
109 |
Q |
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| T |
8571676 |
catcatcattttcagaccatgattttcattttcagtaaaattgattgtattgtattatgtgacaggatttgaaggcccaacttgataacggaaagaagtt |
8571577 |
T |
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| Q |
110 |
gcctttccctgatggaattcttatcaatggtcgtgggtctggaggatcatctctcaatgtggagcaaggtactgcattacctacgtgaataagaatcata |
209 |
Q |
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| T |
8571576 |
gcctttccctgatggaattcttatcaatggtcgtgggtctggaggatcatctctcaatgtggagcaaggtactgcattacctacgtgaataagaatcata |
8571477 |
T |
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| Q |
210 |
atgttgttttatctagctttcctcaacattagtactaaacttgtcataaatgttacaggaaagacttacaggcttagaatatcaaacgtgggattggaaa |
309 |
Q |
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| T |
8571476 |
atgttgttttatttagctttcctcaacattagtactaaacttgtcataaatgttacaggaaagacttacaggcttagaatatcaaacgtgggattggaaa |
8571377 |
T |
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| Q |
310 |
attcactcaactttcgcatacagaaccacaagatgaagctggtagaagtggaaggaacacacaccctccaaaccacctattcctcccttgacgttcacgt |
409 |
Q |
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| T |
8571376 |
attcactcaactttcgcatacagaaccacaagatgaagctggtagaagtggaaggaacacacaccctccaaaccacctattcctcccttgacgttcacgt |
8571277 |
T |
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| Q |
410 |
cggtcaatcatattcagttctagtaaccgcagatcaacctggtcaagactattatattgttgtttc |
475 |
Q |
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| T |
8571276 |
cggtcaatcatactcagttctagtaaccgcagatcaacctagtcaagactattatattgttgtttc |
8571211 |
T |
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Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 264 - 449
Target Start/End: Complemental strand, 53750658 - 53750473
Alignment:
| Q |
264 |
acaggaaagacttacaggcttagaatatcaaacgtgggattggaaaattcactcaactttcgcatacagaaccacaagatgaagctggtagaagtggaag |
363 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||| || |||| || |||||||| || || |||||||| ||||| ||||||||||||||| |
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| T |
53750658 |
acaggaaagacttataggcttaggatatcaaacgtgggattgcaacattcccttaactttcgaattcaaaaccacaaattgaagttggtagaagtggaag |
53750559 |
T |
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| Q |
364 |
gaacacacaccctccaaaccacctattcctcccttgacgttcacgtcggtcaatcatattcagttctagtaaccgcagatcaacct |
449 |
Q |
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| T |
53750558 |
gaacacacacacttcaaactacatactcctcacttgatgttcatgtgggacaatcttactcagtgctagtaactgctgatcaacct |
53750473 |
T |
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