View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16160_low_9 (Length: 378)
Name: NF16160_low_9
Description: NF16160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16160_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 11025645 - 11025996
Alignment:
| Q |
1 |
ggcagaagggaagcatggacggcacagataagtttgcgggggaagaggatgaggaggcttcgtaggagaagatggagctgactgatcaatgacagatgtc |
100 |
Q |
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| T |
11025645 |
ggcagaagggaagcatggacggcacagataagtttgcgggggaagaggatgaggaggcttcgtaggagaagatggagctgactgatcaatgacagatgtc |
11025744 |
T |
|
| Q |
101 |
tattgaattaccaaaacaagggaaggaataggtaatccctgagacttggactcggacactggacacaatgggagatataaagagtggtgtatcctcaaag |
200 |
Q |
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| T |
11025745 |
tattgaattaccaaaacaagggaaggaataggtaatccctgagacttggactcggac-------acaatgggagatataaagagtggtgtatcctcaaag |
11025837 |
T |
|
| Q |
201 |
aatgtgacatcaacaaacatgtagaagctatgcgttgatggacaatagcacttatatcctttctaaactcttgaattgctgagaaagacacatttaactg |
300 |
Q |
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| T |
11025838 |
aatgtgacatcaacaaacatgtagaagctatgcgttgatggacaatagcacttatatcctttctaaactcttgaatcgctgagaaagacacatttaactg |
11025937 |
T |
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| Q |
301 |
cacgagcaaacattttatctaaaccttgagtaagatcatgaataaagctatgtgtgctt |
359 |
Q |
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| T |
11025938 |
cacgagcaaacattttatctaaaccttgagtaagatcatgaataaagctatgtgtgctt |
11025996 |
T |
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Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 186 - 348
Target Start/End: Complemental strand, 17725208 - 17725046
Alignment:
| Q |
186 |
ggtgtatcctcaaagaatgtgacatcaacaaacatgtagaagctatgcgttgatggacaatagcacttatatcctttctaaactcttgaattgctgagaa |
285 |
Q |
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| T |
17725208 |
ggtgtatcctcaaagaatgtgacatcagcagacatgtagaagcgatgtgtggagggacaatagcaccgatatcctttttgaactcttgaatagcctagaa |
17725109 |
T |
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| Q |
286 |
agacacatttaactgcacgagcaaacattttatctaaaccttgagtaagatcatgaataaagc |
348 |
Q |
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| T |
17725108 |
agacacatttaattgcacgagcacacaatttatctaaacctggagtaagatcatgaacaaagc |
17725046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 188 - 348
Target Start/End: Complemental strand, 13039811 - 13039651
Alignment:
| Q |
188 |
tgtatcctcaaagaatgtgacatcaacaaacatgtagaagctatgcgttgatggacaatagcacttatatcctttctaaactcttgaattgctgagaaag |
287 |
Q |
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||||||||||||||||||||||||| || |||||||||||| ||| || || |||||||||||| ||||||||| | ||||||||||| || |||||| |
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| T |
13039811 |
tgtatcctcaaagaatgtgacatcagcagacatgtagaagcgatgtgtggagggacaatagcaccgatatcctttttgaactcttgaatagcctagaaag |
13039712 |
T |
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| Q |
288 |
acacatttaactgcacgagcaaacattttatctaaaccttgagtaagatcatgaataaagc |
348 |
Q |
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| T |
13039711 |
acacatttaattttacgagcacacaatttatctaaacctggagtaagatcatgaacaaagc |
13039651 |
T |
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