View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16162_high_1 (Length: 461)
Name: NF16162_high_1
Description: NF16162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16162_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 420; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 12 - 447
Target Start/End: Original strand, 32070808 - 32071243
Alignment:
| Q |
12 |
atgaacttgtggtacattcaacattggcagtttgagctgttgatgtattccttgatgcaccattcagaatttcttgcagctcatttgctaaatctactcc |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32070808 |
atgaacttgtggtacattcaacattggcagtttgagctgttgatgtattccttgaagcaccattcagaatttcttgcagctcatttgcaaaatctactcc |
32070907 |
T |
|
| Q |
112 |
agcttcttccgtcggaatctgttgttggttgaatacagcttcttccgtcggaatctcttgttggttgaatacttgttgatcttgtttgatgaattggtca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32070908 |
agcttcttccgtcggaatctgttgttggttgaatacagcttcttccgtcggaatctcttgttggttgaatacttgttgatcttgtttgatgaattggtca |
32071007 |
T |
|
| Q |
212 |
aaaccttcaaaagggttttgatcaaatttgaaaaaatcttgcagatcagggtcatcctctagtggtgcaaatgtttttgatcttttattcggtgtaaaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32071008 |
aaaccttcaaaagggttttgatcaaatttgaaaaaatcttgcagatcagggtcatcctctagtggtgcaaatgtttttgatcttttattcggtgtaaaaa |
32071107 |
T |
|
| Q |
312 |
gatcatcgtcgtcaagctcggacatgatatcttcgtatagattcatttgaacaatgttctcatgagaattatgctgcgaggtgcttacaggctcctgaac |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32071108 |
gatcatcgtcgtcaagctcggacatgatatcttcgtatagattcatttgaacaatgttctcttgagaattatgctgcgaggtgcttacaggctcctgaac |
32071207 |
T |
|
| Q |
412 |
aacaatatatttcatgttaatatcataagaaaaata |
447 |
Q |
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|||||||||||| ||||||||||||||||||||||| |
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| T |
32071208 |
aacaatatattttatgttaatatcataagaaaaata |
32071243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 12 - 372
Target Start/End: Original strand, 32100259 - 32100628
Alignment:
| Q |
12 |
atgaacttgtggtacattcaacattggcagtttgagctgttgatgtattccttgatgcaccattcagaatttcttgcagctcatttgctaaatctactcc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32100259 |
atgaacttgtggtacattcaacattggcagtttgagctgttgatgtattccttgatgcaccattcagaatttcttgcagctcatttgcaaaatctactcc |
32100358 |
T |
|
| Q |
112 |
agcttcttccgtcggaatctgttgttggttgaatacagcttcttccgtcggaatctcttgttggttgaatacttgttgatcttgtttg---atgaattgg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| | ||||||| |
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| T |
32100359 |
agcttcttccgtcggaatctgttgttggttgaatacagcttcttccgtcggaatctgttgttggttcgatacttgttgatcttgttgttcaaggaattgg |
32100458 |
T |
|
| Q |
209 |
tcaaaaccttcaaaa---gggttttgatcaaatttgaaaaaatcttgcagatcagggtcatcctctagtggtgcaaatgtttttgatcttttattcggtg |
305 |
Q |
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|||||||| |||||| | ||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32100459 |
tcaaaaccatcaaaaaaagtgttttcatcaaatttgaaaaaatctttcagatcagcgtcatcctctagtggtgcaaatgtttttgatcttttattcggtg |
32100558 |
T |
|
| Q |
306 |
taaaaagatcatcgtc---gtcaagctcggacatgatatcttcgtatagattcatttgaacaatgttctc |
372 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32100559 |
taaaaagatcatcgtctctgtcaagctcggacatgatatcttcgtatagattcatttgaacaacgttctc |
32100628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 147 - 372
Target Start/End: Original strand, 32083401 - 32083635
Alignment:
| Q |
147 |
cagcttcttccgtcggaatctcttgttggttgaatacttgttgatcttgtttg---atgaattggtcaaaaccttcaaaa---gggttttgatcaaattt |
240 |
Q |
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||||||||||||||||||||| ||||||||| | ||||||||||||||||| | ||||||||||||||| |||||| | ||||||||||||||| |
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| T |
32083401 |
cagcttcttccgtcggaatctgttgttggttcattacttgttgatcttgttgttcaaggaattggtcaaaaccatcaaaaaaagtgttttgatcaaattt |
32083500 |
T |
|
| Q |
241 |
gaaaaaatcttgcagatcagggtcatcctctagtggtgcaaatgtttttgatcttttattcggtgtaaaaagatcatcgtc---gtcaagctcggacatg |
337 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||| |
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| T |
32083501 |
gaaaaaatcttgcagatcagcgtcatcctctagtggtgcaaatgtttttgatcttttattcggtttaaaaagatcatcgtcgctgtcaagctcagacatg |
32083600 |
T |
|
| Q |
338 |
atatcttcgtatagattcatttgaacaatgttctc |
372 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
32083601 |
atatcttcgtatagattcatttgaacaatgttctc |
32083635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 12 - 141
Target Start/End: Original strand, 32083302 - 32083431
Alignment:
| Q |
12 |
atgaacttgtggtacattcaacattggcagtttgagctgttgatgtattccttgatgcaccattcagaatttcttgcagctcatttgctaaatctactcc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
32083302 |
atgaacttgtggtacattcaacattggcagtttgagctgttgatgtattccttgaagcaccattcagaatttcttgcagctcttttgcaaaatctactcc |
32083401 |
T |
|
| Q |
112 |
agcttcttccgtcggaatctgttgttggtt |
141 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
32083402 |
agcttcttccgtcggaatctgttgttggtt |
32083431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 377 - 447
Target Start/End: Original strand, 32083670 - 32083740
Alignment:
| Q |
377 |
gaattatgctgcgaggtgcttacaggctcctgaacaacaatatatttcatgttaatatcataagaaaaata |
447 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
32083670 |
gaattatgttgcgaggtgcttacaggctcctgaacaataatatattgtatgttaatatcataagaaaaata |
32083740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 374 - 422
Target Start/End: Original strand, 32100660 - 32100708
Alignment:
| Q |
374 |
tgagaattatgctgcgaggtgcttacaggctcctgaacaacaatatatt |
422 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
32100660 |
tgagaattatgttgtgaggtgcttacaggctcctgaacaacaatatatt |
32100708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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