View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16162_high_6 (Length: 311)

Name: NF16162_high_6
Description: NF16162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16162_high_6
NF16162_high_6
[»] chr5 (1 HSPs)
chr5 (13-294)||(29506863-29507144)
[»] chr3 (2 HSPs)
chr3 (71-294)||(26728831-26729054)
chr3 (13-273)||(8343180-8343440)
[»] scaffold0017 (2 HSPs)
scaffold0017 (19-294)||(181130-181405)
scaffold0017 (71-294)||(170095-170318)
[»] chr1 (6 HSPs)
chr1 (13-284)||(44613227-44613497)
chr1 (76-269)||(11543797-11543990)
chr1 (175-284)||(17811007-17811116)
chr1 (13-115)||(44794953-44795055)
chr1 (208-275)||(35899798-35899865)
chr1 (208-270)||(44794836-44794898)
[»] scaffold0061 (1 HSPs)
scaffold0061 (71-294)||(28474-28697)


Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 29507144 - 29506863
Alignment:
Q  13 aatatcaccggcaagattcccaatttggaactcaagtttaccgaaagtcctgagataaatttgagttcaaatcaacttgaaggttccattccttcttttt 112  Q
    ||||||| ||||||| ||||||||||||||||  |||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||    
T  29507144 aatatcatcggcaaggttcccaatttggaacttgagtttaccaaaagtcctaaaataaatttgagttcaaatcaacttgaaggttccattccttcctttt 29507045  T
Q  113 tatttcaagcagttgcactgcatctttccaataataaattttcagatttagcttcctttgtatgcaacaatagtaagcctaacaatctggcaatgttgga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29507044 tatttcaagcagttgcactgcatctttccaataataaattttcagatttagcttcctttgtatgcaacaatagtaagcctaacaatctggcaatgttgga 29506945  T
Q  213 tttgtcaaacaatcaattaaagggtgagttgcctgattgttggaataatctaacctcattacagtttgttgaactgagcaat 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29506944 tttgtcaaacaatcaattaaagggtgagttgcctgattgttggaataatctaacctcattacagtttgttgaactgagcaat 29506863  T

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Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 71 - 294
Target Start/End: Original strand, 26728831 - 26729054
Alignment:
Q  71 atttgagttcaaatcaacttgaaggttccattccttcttttttatttcaagcagttgcactgcatctttccaataataaattttcagatttagcttcctt 170  Q
    ||||||||||||||||||| ||||||||||||||||||||||||   |||||  | | ||| ||||| |||||||||||||||||||||||| |||||||    
T  26728831 atttgagttcaaatcaactcgaaggttccattccttcttttttacgacaagccctaggactacatctctccaataataaattttcagatttaacttcctt 26728930  T
Q  171 tgtatgcaacaatagtaagcctaacaatctggcaatgttggatttgtcaaacaatcaattaaagggtgagttgcctgattgttggaataatctaacctca 270  Q
    | |||||| ||| ||||||||||||| | |||| ||||||||||| |||||||||||||||||||  |||||||||||||||||||||||| || | |||    
T  26728931 tatatgcagcaaaagtaagcctaacattttggcgatgttggatttatcaaacaatcaattaaaggacgagttgcctgattgttggaataatttagcatca 26729030  T
Q  271 ttacagtttgttgaactgagcaat 294  Q
    ||||| | ||||||  ||||||||    
T  26729031 ttacactatgttgacttgagcaat 26729054  T

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Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 273
Target Start/End: Original strand, 8343180 - 8343440
Alignment:
Q  13 aatatcaccggcaagattcccaatttggaactcaagtttaccgaaagtcctgagataaatttgagttcaaatcaacttgaaggttccattccttcttttt 112  Q
    |||||||||||||| ||| |||||||| ||||| | | |||| | | |||||| ||| |||||||||||||  ||||||||||||||||||| ||  |||    
T  8343180 aatatcaccggcaacatttccaatttgaaactcgattatacctacaatcctgaaatagatttgagttcaaacaaacttgaaggttccattccctcacttt 8343279  T
Q  113 tatttcaagcagttgcactgcatctttccaataataaattttcagatttagcttcctttgtatgcaacaatagtaagcctaacaatctggcaatgttgga 212  Q
    |||| |||||||| ||| ||||||| ||||||||||||||||||||| ||| ||||||  |||||| ||| | ||  |||||| || ||| | | |||||    
T  8343280 tattgcaagcagtagcattgcatctctccaataataaattttcagatatagtttccttactatgcagcaaaattagacctaactatttgggacttttgga 8343379  T
Q  213 tttgtcaaacaatcaattaaagggtgagttgcctgattgttggaataatctaacctcatta 273  Q
    | | ||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||    
T  8343380 tgtatcaaacaatgaattaaagggtgagttgcccgattgttggaataatttaacctcatta 8343440  T

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Target: scaffold0017 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 181130 - 181405
Alignment:
Q  19 accggcaagattcccaatttggaactcaagtttaccgaaagtcctgagataaatttgagttcaaatcaacttgaaggttccattccttcttttttatttc 118  Q
    ||||||| || ||| ||||||||||||||  | ||| | |||||| | ||| ||||||||| ||||||| ||||||||| ||||||||  |||||||| |    
T  181130 accggcatgaatcctaatttggaactcaaactcaccaacagtcctcatatagatttgagtttaaatcaatttgaaggttgcattcctttatttttattgc 181229  T
Q  119 aagcagttgcactgcatctttccaataataaattttcagatttagcttcctttgtatgcaacaatagtaagcctaacaatctggcaatgttggatttgtc 218  Q
    ||||||  ||| | || |||||| ||||||||||||||||||||||||||||   ||||| ||| |||||||| | |||| ||| ||| |||||||| ||    
T  181230 aagcaggagcagtacaactttccgataataaattttcagatttagcttccttcacatgcagcaaaagtaagccaagcaatttggtaattttggatttatc 181329  T
Q  219 aaacaatcaattaaagggtgagttgcctgattgttggaataatctaacctcattacagtttgttgaactgagcaat 294  Q
    || |||| |||||||||||||||||||||||||||||||| || ||||||||||||| | |||||| |||||||||    
T  181330 aagcaatgaattaaagggtgagttgcctgattgttggaatgatttaacctcattacaatatgttgatctgagcaat 181405  T

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Target: scaffold0017; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 71 - 294
Target Start/End: Original strand, 170095 - 170318
Alignment:
Q  71 atttgagttcaaatcaacttgaaggttccattccttcttttttatttcaagcagttgcactgcatctttccaataataaattttcagatttagcttcctt 170  Q
    |||||| |||||||||  || ||||||||||||||||||| || |  || |||   |||||  |||||||||||||||||||||||||||||| ||||||    
T  170095 atttgatttcaaatcagtttaaaggttccattccttctttcttgtcgcaggcaagagcactatatctttccaataataaattttcagatttagtttcctt 170194  T
Q  171 tgtatgcaacaatagtaagcctaacaatctggcaatgttggatttgtcaaacaatcaattaaagggtgagttgcctgattgttggaataatctaacctca 270  Q
    | ||||||| |  | ||||||||||| | ||| | | |||||  |  |||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  170195 tctatgcaatagaaataagcctaacattttggaagttttggaaatagcaaacaatgaattaaagggcgagttgcctgattgttggaataatctaacctca 170294  T
Q  271 ttacagtttgttgaactgagcaat 294  Q
    ||| | |||||||| || ||||||    
T  170295 ttaaaatttgttgacctcagcaat 170318  T

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Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 284
Target Start/End: Original strand, 44613227 - 44613497
Alignment:
Q  13 aatatcaccggcaagattcccaatttggaactcaagtttaccgaaagtcctgagataaatttgagttcaaatcaacttgaaggttccattccttcttttt 112  Q
    |||||||| |||| |||||| ||||||||||||||  ||||| | | | ||  |||||||||||||||||||||  ||||||||||||||||||||||||    
T  44613227 aatatcacaggcatgattcctaatttggaactcaatcttaccaacaatactatgataaatttgagttcaaatcagtttgaaggttccattccttcttttt 44613326  T
Q  113 tatttcaagcagttgcactgcatctttccaataataaattttcagatttagcttcctttgtatgcaacaatagtaagcctaacaatctggcaatgttgga 212  Q
    |||| |||||||  |||||   ||| ||||||||||| ||||||||||||| ||  ||| |||||||||  |||||  |||||| | ||| ||| |||||    
T  44613327 tattgcaagcaggagcactatttctgtccaataataacttttcagatttag-tttttttctatgcaacagaagtaattctaacattttggaaattttgga 44613425  T
Q  213 tttgtcaaacaatcaattaaagggtgagttgcctgattgttggaataatctaacctcattacagtttgttga 284  Q
    ||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||| | ||||||||    
T  44613426 tttatcaaacaatcaaataaagggtgagttacctgattgttggaataatctaacctcgttaaaatttgttga 44613497  T

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Target: chr1; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 76 - 269
Target Start/End: Complemental strand, 11543990 - 11543797
Alignment:
Q  76 agttcaaatcaacttgaaggttccattccttcttttttatttcaagcagttgcactgcatctttccaataataaattttcagatttagcttcctttgtat 175  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| ||||||| |||||||||||||||||||||||||  |||||| |||    
T  11543990 agttcaaatcaacttgaaggttccattccttctcttttattgcaagcagtagcattgcatctctccaataataaattttcagatttagtgtcctttctat 11543891  T
Q  176 gcaacaatagtaagcctaacaatctggcaatgttggatttgtcaaacaatcaattaaagggtgagttgcctgattgttggaataatctaacctc 269  Q
    ||| ||||| ||| ||||||  ||| |   | |||||| | |||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  11543890 gcagcaatattaaacctaactctctaggccttttggatatatcaaacaatcaattaaagggtgagctgcctgattgttggaataatttaacctc 11543797  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 17811116 - 17811007
Alignment:
Q  175 tgcaacaatagtaagcctaacaatctggcaatgttggatttgtcaaacaatcaattaaagggtgagttgcctgattgttggaataatctaacctcattac 274  Q
    |||||||| |||||| | |||| | ||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||  || | |||||||    
T  17811116 tgcaacaaaagtaagaccaacattttgggaattttggatttatcaaacaatgaattaaagggtgagttgcctgattgttggaataacttagcatcattac 17811017  T
Q  275 agtttgttga 284  Q
    | ||||||||    
T  17811016 aatttgttga 17811007  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 44795055 - 44794953
Alignment:
Q  13 aatatcaccggcaagattcccaatttggaactcaagtttaccgaaagtcctgagataaatttgagttcaaatcaacttgaaggttccattccttcttttt 112  Q
    |||||||| |||| |||||| ||||||||||||||  ||||| ||| |||||  ||| ||||||||||||||||  ||||||||||||||||||| ||||    
T  44795055 aatatcacaggcatgattcctaatttggaactcaatcttaccaaaattcctgtaatagatttgagttcaaatcagtttgaaggttccattccttcctttt 44794956  T
Q  113 tat 115  Q
    |||    
T  44794955 tat 44794953  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 35899798 - 35899865
Alignment:
Q  208 ttggatttgtcaaacaatcaattaaagggtgagttgcctgattgttggaataatctaacctcattaca 275  Q
    ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||    
T  35899798 ttggacttgtcaaacaatgaattaaagggtgagttgtctgattgttggaataatttatcctcattaca 35899865  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 208 - 270
Target Start/End: Complemental strand, 44794898 - 44794836
Alignment:
Q  208 ttggatttgtcaaacaatcaattaaagggtgagttgcctgattgttggaataatctaacctca 270  Q
    |||||| | ||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  44794898 ttggatatatcaaacaatgaattaaagggagagttgcctgattgttggaataatctaacctca 44794836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 71 - 294
Target Start/End: Complemental strand, 28697 - 28474
Alignment:
Q  71 atttgagttcaaatcaacttgaaggttccattccttcttttttatttcaagcagttgcactgcatctttccaataataaattttcagatttagcttcctt 170  Q
    |||||| |||||||||  || ||||||||||||||||||| || |  || |||   |||||  |||||||||||||||||||||||||||||| ||||||    
T  28697 atttgatttcaaatcagtttaaaggttccattccttctttcttgtcgcaggcaagagcactatatctttccaataataaattttcagatttagtttcctt 28598  T
Q  171 tgtatgcaacaatagtaagcctaacaatctggcaatgttggatttgtcaaacaatcaattaaagggtgagttgcctgattgttggaataatctaacctca 270  Q
    | ||||||| |  | ||||||||||| | ||| | | |||||  |  |||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  28597 tctatgcaatagaaataagcctaacattttggaagttttggaaatagcaaacaatgaattaaagggcgagttgcctgattgttggaataatctaacctca 28498  T
Q  271 ttacagtttgttgaactgagcaat 294  Q
    ||| | |||||||| || ||||||    
T  28497 ttaaaatttgttgacctcagcaat 28474  T

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