View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16162_low_2 (Length: 413)
Name: NF16162_low_2
Description: NF16162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16162_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 21 - 405
Target Start/End: Original strand, 48474341 - 48474725
Alignment:
| Q |
21 |
acatatcctaaacttctgatagtgtgatttacaagcaatggttctctaagttgattcatgatgatatctgaagaagagaatgagatgggaagggagagtt |
120 |
Q |
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| T |
48474341 |
acatatcctaaacttctgatagtgtgatttacaagcaatggttctctaagttgattcatgatgatatctgaagaagagaatgagatgggaagggagagtt |
48474440 |
T |
|
| Q |
121 |
gcggcaaactgggcatgtagcgttcatgcgaagccattcatcaatgcagtgagcatgaaaacagtgtttgcattcaggaatgcatctaattatgtcctta |
220 |
Q |
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| T |
48474441 |
gcggcaaactgggcatgtagcgttcatgcgaagccattcatcaatgcagtgagcatgaaaacagtgtttgcattcaggaatgcatctaattatgtcctta |
48474540 |
T |
|
| Q |
221 |
ctgttgtactctgagaggcatattgagcaacatccggttccatcattgtgtcccactcccggcagccttcggctctctcctaacacagccttcccaaaag |
320 |
Q |
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| T |
48474541 |
ctgttgtactctgagaggcatattgagcaacatccggttccatcgttgtgtcccactcccggcagccttcggctctctcctaacacaaccttcccaaaag |
48474640 |
T |
|
| Q |
321 |
actcaattgttgactcatccagacccatcctcatccttgtaatggtaatgtcaatggaaggttcagctgatatcgtccttcttct |
405 |
Q |
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| T |
48474641 |
actcaattgttgactcatccagacccatcctcatccttgtaatggtaatgtcaatggaaggttcagctgatatcgtccttcttct |
48474725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 344
Target Start/End: Original strand, 48472115 - 48472224
Alignment:
| Q |
227 |
tactctgagaggcatattgagcaacatccggttccatcattgtgtcccactcccggcagccttcggctctctcctaacacagccttcccaaaagactcaa |
326 |
Q |
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| T |
48472115 |
tactctgagaggcatgttgggcaacacccggttccatcattgttttccacctcctgc--------gctctctcctaatacaatcttgtcaaaagattcaa |
48472206 |
T |
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| Q |
327 |
ttgttgactcatccagac |
344 |
Q |
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| T |
48472207 |
ttgttgactcatccagac |
48472224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 113 - 233
Target Start/End: Complemental strand, 10058024 - 10057904
Alignment:
| Q |
113 |
ggagagttgcggcaaactgggcatgtagcgttcatgcgaagccattcatcaatgcagtgagcatgaaaacagtgtttgcattcaggaatgcatctaatta |
212 |
Q |
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|||||||| || ||||| ||||||||| | ||||| |||||||| |||||||| || | |||||| ||||| ||||||||||||||||||||||| | | |
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| T |
10058024 |
ggagagttacgacaaacagggcatgtaacattcatacgaagccactcatcaatacaatcagcatggaaacaatgtttgcattcaggaatgcatcttactg |
10057925 |
T |
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| Q |
213 |
tgtccttactgttgtactctg |
233 |
Q |
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| || ||||||||||| |||| |
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| T |
10057924 |
tctctttactgttgtattctg |
10057904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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