View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16162_low_5 (Length: 349)
Name: NF16162_low_5
Description: NF16162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16162_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 46 - 334
Target Start/End: Complemental strand, 246812 - 246534
Alignment:
| Q |
46 |
gatggcaagaaaaatgtacttagctaccaagatgagacctaaaggcaaaagctaactgaggtatccaattgaacaaattaaatcaaagaagagatcatat |
145 |
Q |
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| T |
246812 |
gatggcaagaaaaatgtacttagctaccaagatgagacctaaaggcaaaagctaactgaggtatccaattgaacaaattaaatcaaagaagagatcatat |
246713 |
T |
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| Q |
146 |
gtgtgcaannnnnnnaggtattaaaaaatggtgatgccataaaataaatggtaagagatcatgggaggggccttacaagtataac-ttttgttaagttta |
244 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
246712 |
gtgtgcaatttttttaggtattaaaaaatggtgatgccataaaataaatggtaagagatcatgggaggggccttacaagtataactttttgttaagttta |
246613 |
T |
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| Q |
245 |
aaaatggtgaggccaaaaaattgaaggagactaggaaaccataaaaaattagtgcgttgaacagcatatttatttatttggagttgaatt |
334 |
Q |
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| T |
246612 |
aaaatggtgag-----------gaaggagactaggaaaccataaaaaattagtgcgttgaacagcatatttatttatttggagttgaatt |
246534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 21241944 - 21242023
Alignment:
| Q |
74 |
aagatgagacctaaaggcaaaagctaactgaggtatccaattgaacaaattaaatcaaagaagagatcatatgtgtgcaa |
153 |
Q |
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||||||| |||| ||||| |||||||| ||||||||| |||||||||||||||||||| || ||||| ||||||||||| |
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| T |
21241944 |
aagatgaaacctgaaggctaaagctaagtgaggtatcaaattgaacaaattaaatcaaggaggagattttatgtgtgcaa |
21242023 |
T |
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