View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16162_low_6 (Length: 341)
Name: NF16162_low_6
Description: NF16162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16162_low_6 |
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| [»] scaffold0186 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 29489175 - 29488869
Alignment:
| Q |
17 |
aaaaagggatcagaccaatatcaagaaacccaaatgtgtcaccaccataaaaaagtttgtcactcaatgcaccctctagtgtcttaaagatagagatcaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29489175 |
aaaaagggatcagaccaatatcaagaaacccaaatgtgtcaccaccataaaaaagtttgtcactcaatgccccctctagtgtcttaaagatagagatcaa |
29489076 |
T |
|
| Q |
117 |
ttccatcttcccttcctcatactcttctccttttgaaagccacattttcttccaagtgtcataaacctacatatacataatacattcaagatctatactg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29489075 |
ctccatcttcccttcctcatactcttctccttttgaaagccacattttcttccaagtgtcataaacctacatatacataatacattcaagatcaatactg |
29488976 |
T |
|
| Q |
217 |
aatatttgtattatccatcatttaatttaggggtaataatcactttagtccttgaa-atacagcaagtaatcacaatagtgtccttcaatgcatcgaaaa |
315 |
Q |
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|||||||||||| ||||||||||||||||||| |||| | ||||||| |||||||| ||| || |||||| ||||||| | |||||||||||||||||| |
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| T |
29488975 |
aatatttgtattgtccatcatttaatttagggataat-agcactttaatccttgaatatataggaagtaaccacaata--gcccttcaatgcatcgaaaa |
29488879 |
T |
|
| Q |
316 |
tgtaaaatag |
325 |
Q |
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| ||||||| |
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| T |
29488878 |
ttcaaaatag |
29488869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 330
Target Start/End: Original strand, 30255831 - 30256114
Alignment:
| Q |
17 |
aaaaagggatcagaccaatatcaagaaacccaaatgtgtcaccaccataaaaaagtttgtcactcaatgcaccctctagtgtcttaaagatagagatcaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30255831 |
aaaaagggatcagaccaatatcaagaaacccaaatgtgtcaccaccataaaaaagtttgtcactcaatgccccctctagtgtcttaaagatagagatcaa |
30255930 |
T |
|
| Q |
117 |
ttccatcttcccttcctcatactcttctccttttgaaagccacattttcttccaagtgtcataaacctacatatacataatacattcaagatctatactg |
216 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
30255931 |
ttccatcttcccttcctcat----------------aagccacattttcttccaagtgtcataaacctacata------------ttaagatctatactg |
30256002 |
T |
|
| Q |
217 |
aatatttgtattatccatcatttaatttaggggtaataatcactttagtccttgaaatacagcaagtaatcacaatagtgtccttcaatgcatcgaaaat |
316 |
Q |
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|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
30256003 |
aatatttgtattgtccatcatttaatttaagggtaataatcactttagtccttgaaatatagcaagtaatcacaata--gtccttcaatgcatcgaaaat |
30256100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 29491701 - 29491530
Alignment:
| Q |
17 |
aaaaagggatcagaccaatatcaagaaacccaaatgtgtcaccaccataaaaaagtttgtcactcaatgcaccctctagtgtcttaaagatagagatcaa |
116 |
Q |
| |
|
|||||||||||| |||||| |||||||| ||||| || ||||||| || ||| | ||||||| ||| | ||||||||||||| ||||| |||||||| |
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| T |
29491701 |
aaaaagggatcaaaccaatgtcaagaaagccaaaagtagcaccaccgtagaaaggcttgtcacccaaagtttcctctagtgtcttgaagattgagatcaa |
29491602 |
T |
|
| Q |
117 |
ttccatcttcccttcctcatactcttctccttttgaaagccacattttcttccaagtgtcataaacctacat |
188 |
Q |
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||| ||||||||||||||| |||||| ||||||||||||||||||||| ||||||| ||||| |||||||| |
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| T |
29491601 |
ttctttcttcccttcctcatgctcttccccttttgaaagccacattttcctccaagtatcatacacctacat |
29491530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 29503629 - 29503461
Alignment:
| Q |
17 |
aaaaagggatcagaccaatatcaagaaacccaaatgtgtcaccaccataaaaaagtttgtcactcaatgcaccctctagtgtcttaaagatagagatcaa |
116 |
Q |
| |
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|||||||||||| ||||||||||||||| ||||| || |||||||||||||| ||||||| ||| | |||||||||||||||||||||||||| |
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| T |
29503629 |
aaaaagggatcaaaccaatatcaagaaatccaaaagtagcaccaccataaaaagtcttgtcacccaagatttcttctagtgtcttaaagatagagatcaa |
29503530 |
T |
|
| Q |
117 |
ttccatcttcccttcctcatactcttctccttttgaaagccacattttcttccaagtgtcataaacctacat |
188 |
Q |
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||| |||||| |||||||| ||| |||| | ||||||||||||| || ||||||| |||| |||||||| |
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| T |
29503529 |
ctccttcttcctttcctcatgctc--ctcc-tctgaaagccacattgtcctccaagtagcatacacctacat |
29503461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 8101 - 8145
Alignment:
| Q |
19 |
aaagggatcagaccaatatcaagaaacccaaatgtgtcaccacca |
63 |
Q |
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|||||||||| | |||| |||| |||||||||||||||||||||| |
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| T |
8101 |
aaagggatcaaagcaatgtcaacaaacccaaatgtgtcaccacca |
8145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 18873591 - 18873635
Alignment:
| Q |
19 |
aaagggatcagaccaatatcaagaaacccaaatgtgtcaccacca |
63 |
Q |
| |
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|||||||||| | |||| |||| |||||||||||||||||||||| |
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| T |
18873591 |
aaagggatcaaagcaatgtcaacaaacccaaatgtgtcaccacca |
18873635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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