View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16163_high_4 (Length: 238)
Name: NF16163_high_4
Description: NF16163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16163_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 382000 - 382182
Alignment:
| Q |
9 |
acatcatcatcatatattgcatatagattagattccctattttaccaattaaagtgaaaaagaacctaagttataaatgctccacaacaacaaatcacta |
108 |
Q |
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| T |
382000 |
acatcatcatcatatattacatatagattagattccctattttaccaattaaagtgaaaaagaacctatgttataaatgctccacaacaagaaatcacta |
382099 |
T |
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| Q |
109 |
taccattaccataactcaatctaactat----atagatataaaccaaattcaaataccgtttttccattagcactaacaacaa |
187 |
Q |
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| T |
382100 |
taccattaccataactcaatctaactatatagatagatataaaccaaattcaaataccgtttttccattagcactaacaacaa |
382182 |
T |
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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 238
Target Start/End: Original strand, 382177 - 382208
Alignment:
| Q |
207 |
caacaaaaatcaaccattcatgcacaatcatt |
238 |
Q |
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| T |
382177 |
caacaaaaatcaaccattcatgcacaatcatt |
382208 |
T |
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