View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16163_low_1 (Length: 446)

Name: NF16163_low_1
Description: NF16163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16163_low_1
NF16163_low_1
[»] chr1 (7 HSPs)
chr1 (1-427)||(49710826-49711252)
chr1 (3-427)||(49683216-49683640)
chr1 (3-427)||(49714467-49714890)
chr1 (3-427)||(49688122-49688539)
chr1 (4-427)||(49215488-49215904)
chr1 (190-427)||(49725242-49725479)
chr1 (296-385)||(49728706-49728795)
[»] chr8 (1 HSPs)
chr8 (285-338)||(44035825-44035878)
[»] chr6 (1 HSPs)
chr6 (286-338)||(30955409-30955461)


Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 49711252 - 49710826
Alignment:
Q  1 ggagatgttgaaggagaagacaaaaagggtttgggtggtatttccggcatttgaagactcccttccagcatttccaccactttatgcattgctggtcgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49711252 ggagatgttgaaggagaagacaaaaagggtttgggtggtatttccagcatttgaagactcccttccagcatttccaccactttatgcattgctggtcgat 49711153  T
Q  101 gagaagggtcggtttgtatgcaccataaactcaccactgacatttttctgaccatttcttcatcattttcatttttaatacacttgagtccaagatcctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  49711152 gagaagggtcggtttgtatgcaccataaactcaccactgacatttttctgaccatttcttcatcattttcatttttaatactcttgagtccaagatcctg 49711053  T
Q  201 attcaattcaagactcttgtaaatccagtgtggaaaatataactcgctagaacaatcaacttcaaccttaatgttctttcttcgaccaaccatctctaaa 300  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49711052 attcaattcaagacgcttgtaaatccagtgtggaaaatataactcgctagaacaatcaacttcaaccttaatgttctttcttcgaccaaccatctctaaa 49710953  T
Q  301 accatcattccgtaactgtagacatctgacttatgtgacaccccaccaaaatttctagagaacaactctggagcaatatatcctggtgttccccttgcac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49710952 accatcattccgtaactgtagacatctgacttatgtgacaccccaccaaaatttctagagaacaactctggagcaatatatcctggtgttccccttgcac 49710853  T
Q  401 caaatattgatacaatgctttcttttc 427  Q
    |||||||||||||||||||||||||||    
T  49710852 caaatattgatacaatgctttcttttc 49710826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 3 - 427
Target Start/End: Complemental strand, 49683640 - 49683216
Alignment:
Q  3 agatgttgaaggagaagacaaaaagggtttgggtggtatttccggcatttgaagactcccttccagcatttccaccactttatgcattgctggtcgatga 102  Q
    |||| |||||||||| ||||||||||||||||||||||||||  ||| |||||| |||||||| ||||||||||||||||||| |||||||||||||||     
T  49683640 agatcttgaaggagaggacaaaaagggtttgggtggtatttctagcacttgaaggctcccttctagcatttccaccactttattcattgctggtcgatgt 49683541  T
Q  103 gaagggtcggtttgtatgcaccataaactcaccactgacatttttctgaccatttcttcatcattttcatttttaatacacttgagtccaagatcctgat 202  Q
    |||||||||||| ||||||||||||||||||||| || ||| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| ||||    
T  49683540 gaagggtcggttggtatgcaccataaactcaccattgtcatctttcttaccatctcttcatcaatttcatttttaatacacttgagtccaagatcttgat 49683441  T
Q  203 tcaattcaagactcttgtaaatccagtgtggaaaatataactcgctagaacaatcaacttcaaccttaatgttctttcttcgaccaaccatctctaaaac 302  Q
    |||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||    
T  49683440 tcaattcaagacgcttgtagatccaatgtggaaaatataactcgctagaacaatccacttcaactttgatgttctttcttcgaccaaccatttctaaaac 49683341  T
Q  303 catcattccgtaactgtagacatctgacttatgtgacaccccaccaaaatttctagagaacaactctggagcaatatatcctggtgttccccttgcacca 402  Q
    ||||||||| ||||||||||||||||| || ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  49683340 catcattccataactgtagacatctgatttgtgtgacaccccaccaaaatgtctagagaacagctctggagcaatatatcctggtgtcccccttgcacca 49683241  T
Q  403 aatattgatacaatgctttcttttc 427  Q
    |||||||||||||||||||||||||    
T  49683240 aatattgatacaatgctttcttttc 49683216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 3 - 427
Target Start/End: Complemental strand, 49714890 - 49714467
Alignment:
Q  3 agatgttgaaggagaagacaaaaagggtttgggtggtatttccggcatttgaagactcccttccagcatttccaccactttatgcattgctggtcgatga 102  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||||||| ||||||||||     
T  49714890 agatgttgaaggagacgacaaaaagggtttgggtggtatttccagcacttgaaggctcccttccaacatttccaccactttatgcattcctggtcgatgc 49714791  T
Q  103 gaagggtcggtttgtatgcaccataaactcaccactgacatttttctgaccatttcttcatcattttcatttttaatacacttgagtccaagatcctgat 202  Q
    |||||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||| | ||| ||||||||||||    
T  49714790 gaagggtcagttcgtatgcaccataaactcaccactgtcatttttcttaccatttcttcatcaatttcatttttaatacacctcagttcaagatcctgat 49714691  T
Q  203 tcaattcaagactcttgtaaatccagtgtggaaaatataactcgctagaacaatcaacttcaaccttaatgttctttcttcgaccaaccatctctaaaac 302  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  49714690 tcaattcaagacgcttgtaaatccagtgtggaaaatataactcgctggaacaatcaacttcaaccttaatgttctttcttcggccaaccatttctaaaac 49714591  T
Q  303 catcattccgtaactgtagacatctgacttatgtgacaccccaccaaaatttctagagaacaactctggagcaatatatcctggtgttccccttgcacca 402  Q
    ||||||||| ||||| || |||||||| ||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||  ||| ||    
T  49714590 catcattccataactataaacatctgatttatgtgacaccccgtcaaaatttctggagaacaactctggagcaatatatcctggtgttcccc-cgcaaca 49714492  T
Q  403 aatattgatacaatgctttcttttc 427  Q
    ||||| |||||||||||||||||||    
T  49714491 aatatggatacaatgctttcttttc 49714467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 3 - 427
Target Start/End: Complemental strand, 49688539 - 49688122
Alignment:
Q  3 agatgttgaaggagaagacaaaaagggtttgggtggtatttccggcatttgaagactcccttccagcatttccaccactttatgcattgctggtcgatga 102  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||||||||||||||||||| |||| ||     
T  49688539 agatgtagaaggagaagacaaaaagggtttgggtggtatttccagcacttcaaggctcccttccagcatttccaccactttatgcattgcttgtcggtgt 49688440  T
Q  103 gaagggtcggtttgtatgcaccataaactcaccactgacatttttctgaccatttcttcatcattttcatttttaatacacttgagtccaagatcctgat 202  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  49688439 gaaggatcggtttgtatgcaccataaactcaccactgtcatttttcttaccatttcttcatcattttcatttttaatagacttgagtccaagatcttgat 49688340  T
Q  203 tcaattcaagactcttgtaaatccagtgtggaaaatataactcgctagaacaatcaacttcaaccttaatgttctttcttcgaccaaccatctctaaaac 302  Q
    |||||||||||| |||||||||||| |||||||||||||| |||||||||||||| |||||||| || |||||||||||| |||||||||| |     ||    
T  49688339 tcaattcaagacgcttgtaaatccaatgtggaaaatataaatcgctagaacaatccacttcaactttgatgttctttctttgaccaaccattt-----ac 49688245  T
Q  303 catcattccgtaactgtagacatctgacttatgtgacaccccaccaaaatttctagagaacaactctggagcaatatatcctggtgttccccttgcacca 402  Q
    ||||||||| ||||||||||||||||| ||||| |||||||||||||||||||  ||||||||||||||||||  ||||||||| |||||||||||||||    
T  49688244 catcattccataactgtagacatctgatttatgggacaccccaccaaaatttcgggagaacaactctggagca--atatcctggcgttccccttgcacca 49688147  T
Q  403 aatattgatacaatgctttcttttc 427  Q
    ||||| |||||||||||||||||||    
T  49688146 aatatggatacaatgctttcttttc 49688122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 4 - 427
Target Start/End: Complemental strand, 49215904 - 49215488
Alignment:
Q  4 gatgttgaaggagaagacaaaaagggtttgggtggtatttccggcatttgaagactcccttccagcatttccaccactttatgcattgctggtcgatgag 103  Q
    |||||||||||||||||||||||||||||||||||||||||  ||| |||||| |||||||||| ||||||||||||||||||||||||||||||||       
T  49215904 gatgttgaaggagaagacaaaaagggtttgggtggtatttcaagcacttgaaggctcccttccaacatttccaccactttatgcattgctggtcgattca 49215805  T
Q  104 aagggtcggtttgtatgcaccataaactcaccactgacatttttctgaccatttcttcatcattttcatttttaatacacttgagtccaagatcctgatt 203  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  49215804 aagggtctgtttgtatgcaccataaactcaccactgtcatttttcttaccatttcttcatcaatttcatttttaatacacctgagtccaagatcctgatt 49215705  T
Q  204 caattcaagactcttgtaaatccagtgtggaaaatataactcgctagaacaatcaacttcaaccttaatgttctttcttcgaccaaccatctctaaaacc 303  Q
    ||||||||||| ||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  49215704 caattcaagacgcttgtaaatccagtgtggaaaatattactc-------caatcaacttcaaccttaatgttctttcttcgacaaaccatttctaaaacc 49215612  T
Q  304 atcattccgtaactgtagacatctgacttatgtgacaccccaccaaaatttctagagaacaactctggagcaatatatcctggtgttccccttgcaccaa 403  Q
    |||||||| ||||| || |||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||| ||||    
T  49215611 atcattccataactataaacatctgatttatgtgacaccccaccaaaatgtctggagaacaactctggagcaatatatcctggcgttcctcttgcgccaa 49215512  T
Q  404 atattgatacaatgctttcttttc 427  Q
    |||  ||| |||| ||||||||||    
T  49215511 atacggatgcaatactttcttttc 49215488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 190 - 427
Target Start/End: Complemental strand, 49725479 - 49725242
Alignment:
Q  190 ccaagatcctgattcaattcaagactcttgtaaatccagtgtggaaaatataactcgctagaacaatcaacttcaaccttaatgttctttcttcgaccaa 289  Q
    ||||||||||||||  | |||||||  ||||||||||| || ||||||||||  || || || |  || ||||||   || ||||| ||||| |  ||||    
T  49725479 ccaagatcctgatttgaatcaagacggttgtaaatccaatgaggaaaatatatttcactcgagcggtccacttcagtgttgatgttttttctcctcccaa 49725380  T
Q  290 ccatctctaaaaccatcattccgtaactgtagacatctgacttatgtgacaccccaccaaaatttctagagaacaactctggagcaatatatcctggtgt 389  Q
    |||| || |  ||||||||||| |||||||| ||||||||||||||||||||  |||||||||| ||||| || | ||| || |||||||| ||||  ||    
T  49725379 ccatttccatgaccatcattccataactgtaaacatctgacttatgtgacactgcaccaaaattcctagaaaatacctcgggggcaatatagcctgccgt 49725280  T
Q  390 tccccttgcaccaaatattgatacaatgctttcttttc 427  Q
    ||| || ||||||||||||||||| || ||||||||||    
T  49725279 tcctctcgcaccaaatattgataccatactttcttttc 49725242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 385
Target Start/End: Complemental strand, 49728795 - 49728706
Alignment:
Q  296 ctaaaaccatcattccgtaactgtagacatctgacttatgtgacaccccaccaaaatttctagagaacaactctggagcaatatatcctg 385  Q
    |||||||||||||||| ||||| || ||||| || || || || || ||||||||||||||||||||||  ||||||||||| |||||||    
T  49728795 ctaaaaccatcattccataactatatacatcagatttgtgagagacgccaccaaaatttctagagaacacttctggagcaatgtatcctg 49728706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 44035878 - 44035825
Alignment:
Q  285 accaaccatctctaaaaccatcattccgtaactgtagacatctgacttatgtga 338  Q
    ||||||||| ||||  | ||||||||||||||| |||||||| |||||||||||    
T  44035878 accaaccatttctagcaacatcattccgtaactatagacatcagacttatgtga 44035825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 338
Target Start/End: Complemental strand, 30955461 - 30955409
Alignment:
Q  286 ccaaccatctctaaaaccatcattccgtaactgtagacatctgacttatgtga 338  Q
    |||||||||||||||| ||||||||| ||||| || ||||| ||||| |||||    
T  30955461 ccaaccatctctaaaagcatcattccataactataaacatcagacttgtgtga 30955409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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