View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16163_low_2 (Length: 436)
Name: NF16163_low_2
Description: NF16163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16163_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 200 - 421
Target Start/End: Original strand, 11549280 - 11549502
Alignment:
| Q |
200 |
ttatgatgtaaaaacaacatatatgcagtaatagaaagcaaatccatataatatgttcatattaattcaaaattcaacaatacaaaacaacctaaatgca |
299 |
Q |
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| T |
11549280 |
ttatgatgtaaaaacaacatatatgcagaaatagaaagcaaatccatataatatgttcatattaattcaaaattcaacaatacaaaacaacctaaatgca |
11549379 |
T |
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| Q |
300 |
atgataatattctaatataaatgatttcagaattttatacgtctacatt-ggttgtgaatcaccatccaatacgacactgtattatgggttaccattcaa |
398 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
11549380 |
atgacaatattctaatataaatgatttcagaattttatacgtctacattgggttgtgaatcaccatgcaatacgacactgcattatgggttaccattcaa |
11549479 |
T |
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| Q |
399 |
cttgacagcacaatgagggatgt |
421 |
Q |
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| T |
11549480 |
cctgacagcacaatgagggatgt |
11549502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 42 - 194
Target Start/End: Complemental strand, 11444071 - 11443919
Alignment:
| Q |
42 |
ctctaaaacaaataaaacactaagttgagcttgaaaatctaaaccaaggattaatgagtaccggagatccatcagatggcttcaagctttgttgattttg |
141 |
Q |
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| T |
11444071 |
ctctaaaacaaataaaacactaagttgagcttgaaaatctaaaccaaggattaatgagtaccggagatccatcagatggcttcaagcttcgttgattttg |
11443972 |
T |
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| Q |
142 |
atcaccaacccaaacatcgctctgcttgggctttagtattgttgtgatcatcg |
194 |
Q |
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| T |
11443971 |
atcaccaacccaaacatcgctctgcttcggctttagtattgttgtgatcatcg |
11443919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 42 - 194
Target Start/End: Original strand, 11549069 - 11549221
Alignment:
| Q |
42 |
ctctaaaacaaataaaacactaagttgagcttgaaaatctaaaccaaggattaatgagtaccggagatccatcagatggcttcaagctttgttgattttg |
141 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11549069 |
ctctaaaacaaataaaacactaagttgagcttgaaaatctaaaccaaggattaatgagtaccggagatccatcagatggcttcaagcttcgttgattttg |
11549168 |
T |
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| Q |
142 |
atcaccaacccaaacatcgctctgcttgggctttagtattgttgtgatcatcg |
194 |
Q |
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| T |
11549169 |
atcaccaacccaaacatcgctctgcttcggctttagtattgttgtgatcatcg |
11549221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 200 - 329
Target Start/End: Complemental strand, 11443860 - 11443731
Alignment:
| Q |
200 |
ttatgatgtaaaaacaacatatatgcagtaatagaaagcaaatccatataatatgttcatattaattcaaaattcaacaatacaaaacaacctaaatgca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11443860 |
ttatgatgtaaaaacaacatatatgcagtaatagaaagcaaacccatataatatgttcatattaattcaaaattcaacaatacaaaacaacctaaatgca |
11443761 |
T |
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| Q |
300 |
atgataatattctaatataaatgatttcag |
329 |
Q |
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| T |
11443760 |
atgacaatattctaatataaatgatttcag |
11443731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 202 - 337
Target Start/End: Complemental strand, 11440974 - 11440839
Alignment:
| Q |
202 |
atgatgtaaaaacaacatatatgcagtaatagaaagcaaatccatataatatgttcatattaattcaaaattcaacaatacaaaacaacctaaatgcaat |
301 |
Q |
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||||||||||||||| |||||||| | |||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| || | |
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| T |
11440974 |
atgatgtaaaaacaatatatatgccgaaatacaaagcaaatccatataacatgttcatatcaattcaaaattcaacaatacaaaacaacctaaatacagt |
11440875 |
T |
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| Q |
302 |
gataatattctaatataaatgatttcagaattttat |
337 |
Q |
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| T |
11440874 |
gacaatattctaatataagggatttcagaattttat |
11440839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 11441134 - 11441034
Alignment:
| Q |
96 |
tgagtaccggagatccatcagatggcttcaagctttgttgattttgatcaccaac-ccaaacatcgctctgcttgggctttagtattgttgtgatcatcg |
194 |
Q |
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||||||| ||| ||||||| ||||||||||||| | |||||||||||||||||| | |||||||||||||||| ||||| || ||||| |||||||||| |
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| T |
11441134 |
tgagtactggatatccatccgatggcttcaagcctcattgattttgatcaccaactcgaaacatcgctctgcttcggcttcagcattgtcgtgatcatcg |
11441035 |
T |
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| Q |
195 |
c |
195 |
Q |
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| T |
11441034 |
c |
11441034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 421
Target Start/End: Complemental strand, 11440390 - 11440324
Alignment:
| Q |
355 |
gaatcaccatccaatacgacactgtattatgggttaccattcaacttgacagcacaatgagggatgt |
421 |
Q |
| |
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|||||||||| ||||| ||||||| |||||| || ||||| |||| ||||| ||||||||||||||| |
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| T |
11440390 |
gaatcaccattcaatatgacactgcattatgagtcaccatccaacatgacaccacaatgagggatgt |
11440324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 11441159 - 11441131
Alignment:
| Q |
42 |
ctctaaaacaaataaaacactaagttgag |
70 |
Q |
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| T |
11441159 |
ctctaaaacaaataaaacactaagttgag |
11441131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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