View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16163_low_3 (Length: 404)
Name: NF16163_low_3
Description: NF16163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16163_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 15 - 387
Target Start/End: Original strand, 12137159 - 12137538
Alignment:
| Q |
15 |
gataagaatcttaggtgaaatcatggtgatgtgtggttcatttgtctctgcttaaaatttaagattgttcccactcattagtgatttcaagagtcactgc |
114 |
Q |
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| T |
12137159 |
gataagaatcttaggtgaaatcatggtgatgtttggttcatttgtctctgcttaaaatttaagattgttcccactcattagtgatttcaagagtcactgc |
12137258 |
T |
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| Q |
115 |
cccttacttttgcttttctgtgtgggattgtaagcgatttgttttcaggaatggtaacatggcctattttggttattct-------gattggtatccgtt |
207 |
Q |
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| T |
12137259 |
cccttacttttgcttttccgtgtgggattgtaagcgatttgttttcaggaatggtaacatggcctattttggttatgctttaccctgattggtatccgtt |
12137358 |
T |
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| Q |
208 |
cataaaccttccgaataatgataaatattttgtttagtacaatgaatctcgaccgtaatccataaatgttaaggaaaatgtaacgcacgaccatgattcg |
307 |
Q |
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| T |
12137359 |
cataaaccttccgaataatgataaatattttgtttagtacaatgaatctcgaccgtaatccataaatgttaaggaaaatgtaacgcacgaccatgattcg |
12137458 |
T |
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| Q |
308 |
attgtttactctggcacgtgagaaaatgggaacacgtgactttggaggagtaggaggcgcctttttatttgcatcctttc |
387 |
Q |
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| T |
12137459 |
attgtttactctggcacgtgagaaaatgggaacacgtgactttggaggagtaggaggcgcctttttatttgcatcctttc |
12137538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 201 - 380
Target Start/End: Original strand, 34530617 - 34530796
Alignment:
| Q |
201 |
atccgttcataaaccttccgaataatgataaatattttgtttagtacaatgaatctcgaccgtaatccataaatgttaaggaaaatgtaacgcacgacca |
300 |
Q |
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| T |
34530617 |
atccgttcataaactttccagctaatcattaatatttggtttagtacaattaatttattccataatccataaatattaaggaaaatgtagcgtacgacaa |
34530716 |
T |
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| Q |
301 |
tgattcgattgtttactctggcacgtgagaaaatgggaacacgtgactttggaggagtaggaggcgcctttttatttgca |
380 |
Q |
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| T |
34530717 |
tgattcaattgttgactatttcacgtgagaaaatgtgaacacgtgactttagagaagcgggaggcgcctttttatttgca |
34530796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 262 - 378
Target Start/End: Complemental strand, 34531324 - 34531208
Alignment:
| Q |
262 |
gtaatccataaatgttaaggaaaatgtaacgcacgaccatgattcgattgtttactctggcacgtgagaaaatgggaacacgtgactttggaggagtagg |
361 |
Q |
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| T |
34531324 |
gtaatctagaaatgttaagaaaaatgtaacgtacgatcatgattcgattgctgactattgcatgtgagaaaatggaaacacgtgattttagaggtgtagg |
34531225 |
T |
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| Q |
362 |
aggcgcctttttatttg |
378 |
Q |
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| T |
34531224 |
aggcgcctttttatttg |
34531208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 34530388 - 34530463
Alignment:
| Q |
15 |
gataagaatcttaggtgaaatcatggtgatgtgtggttcatttgtctctgcttaaaatttaagattgttcccactc |
90 |
Q |
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|||||| |||| | |||||||||| ||||||| || ||||||||| ||||| |||||||||||| ||||||||| |
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| T |
34530388 |
gataaggatctaaagtgaaatcattgtgatgttgagtccatttgtctgtgcttgaaatttaagatttttcccactc |
34530463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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