View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16164_high_1 (Length: 538)

Name: NF16164_high_1
Description: NF16164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16164_high_1
NF16164_high_1
[»] chr2 (2 HSPs)
chr2 (1-522)||(5697300-5697822)
chr2 (148-213)||(5685293-5685360)
[»] chr5 (2 HSPs)
chr5 (362-401)||(12711582-12711621)
chr5 (362-401)||(12772832-12772871)
[»] chr1 (1 HSPs)
chr1 (360-406)||(39745567-39745614)
[»] chr4 (1 HSPs)
chr4 (362-409)||(32263762-32263810)
[»] chr3 (2 HSPs)
chr3 (362-406)||(30959197-30959241)
chr3 (362-406)||(30975009-30975053)


Alignment Details
Target: chr2 (Bit Score: 495; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Original strand, 5697300 - 5697822
Alignment:
Q  1 taatattctaaaggtgattcctttttcacaatattaattgtttcactttataataagatattatattataaaagatatatgtgtaaattttacatcaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5697300 taatattctaaaggtgattcctttttcacaatattaattgtttcactttataataagatattatattataaaagatatatgtgtaaattttacatcaatt 5697399  T
Q  101 tgtttgtactctctgatgttcagcaaaacaatacacaggaatactttagttgtcttgtgactcaagaattcatcttgtgttctacttgtcctgtaataat 200  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5697400 tgtttgtactctctgatgtttaccaaaacaatacacaggaatactttagttgtcttgtgactcaagaattcatcttgtgttctacttgtcctgtaataat 5697499  T
Q  201 atgcataaaatgcctccttcaatcggtcgtgattgatgactggtacttttcagagaagatagatagttggtcttaaattcttaatgcttctgtctaagtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5697500 atgcataaaatgcctccttcaatcggtcgtgattgatgactagtacttttcagagaagatagatagttggtcttaaattcttaatgcttctgtctaagtg 5697599  T
Q  301 atttagattgcgtgcaatcacaatcccatgcagtctcaaattggttctcatttcaattaaaattttgatatttttaaaatctaaaataccgaacttgaaa 400  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5697600 atttagattgcgcgcaatcacaatcccatgcagtctcaaattggttctcatttcaattaaaattttgatatttttaaaatctaaaataccaaacttgaaa 5697699  T
Q  401 tttggatc-tctgatcatgatgatgtggctgactgcgagactgcacgaaatcgcaatccaacatctgagatcattttactttgtttcaaattgtcacttt 499  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5697700 tttggatcttctgatcatgatgatgtggctgactgcgagactgcacgaaatcgcaatccaacatctgagatcattttactttgtttcaaattgtcacttt 5697799  T
Q  500 ttgacatcacccaattaatttat 522  Q
    |||||||||||||||||||||||    
T  5697800 ttgacatcacccaattaatttat 5697822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 5685293 - 5685360
Alignment:
Q  148 agttgtcttgtgactcaagaat--tcatcttgtgttctacttgtcctgtaataatatgcataaaatgc 213  Q
    ||||||||||||||||||||||  || | | |||||||||||||||||||||||| || |||||||||    
T  5685293 agttgtcttgtgactcaagaatagtcttgtggtgttctacttgtcctgtaataatgtgtataaaatgc 5685360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 401
Target Start/End: Complemental strand, 12711621 - 12711582
Alignment:
Q  362 attttgatatttttaaaatctaaaataccgaacttgaaat 401  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  12711621 attttaatatttttaaaatctaaaataccgaacttaaaat 12711582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 401
Target Start/End: Complemental strand, 12772871 - 12772832
Alignment:
Q  362 attttgatatttttaaaatctaaaataccgaacttgaaat 401  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  12772871 attttaatatttttaaaatctaaaataccgaacttaaaat 12772832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 39745567 - 39745614
Alignment:
Q  360 aaattttgat-atttttaaaatctaaaataccgaacttgaaatttgga 406  Q
    |||||||||| |||||| ||||||||||||||||||||||||| ||||    
T  39745567 aaattttgattattttttaaatctaaaataccgaacttgaaatctgga 39745614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 409
Target Start/End: Complemental strand, 32263810 - 32263762
Alignment:
Q  362 attttgatattttta-aaatctaaaataccgaacttgaaatttggatct 409  Q
    ||||||||||||| | |||  ||||||||||||||||||||||||||||    
T  32263810 attttgatattttaagaaaattaaaataccgaacttgaaatttggatct 32263762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 30959241 - 30959197
Alignment:
Q  362 attttgatatttttaaaatctaaaataccgaacttgaaatttgga 406  Q
    ||||| || |||||||| ||||||||||||| |||||||||||||    
T  30959241 attttaatttttttaaagtctaaaataccgagcttgaaatttgga 30959197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 30975053 - 30975009
Alignment:
Q  362 attttgatatttttaaaatctaaaataccgaacttgaaatttgga 406  Q
    ||||| || |||||||| ||||||||||||| |||||||||||||    
T  30975053 attttaatttttttaaagtctaaaataccgagcttgaaatttgga 30975009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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