View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16165_high_11 (Length: 381)
Name: NF16165_high_11
Description: NF16165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16165_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 21 - 371
Target Start/End: Original strand, 23395343 - 23395696
Alignment:
| Q |
21 |
attcattcattcactcttatataatatgaaagcaatcaaagcgattttgaaattat---aattgatatatggtttaaaggttaacttccatagaannnnn |
117 |
Q |
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| T |
23395343 |
attcattcattcactcttatataatatcaaagcaatcaaagcgattttgaaattatttgaattgatatatggtttaaaggttaacttccatagaattttt |
23395442 |
T |
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| Q |
118 |
nnngatagacatcaatgtcaataattggttggtggacgttgcatgtaaaattaagaacattcctttccaatatataggtctcttggttcatannnnnnnn |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||| |
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| T |
23395443 |
tttgatagacatcgatgtcaataattggttggtggacgttgcatgtaaaattaggagcattcctttccaatatatgggtctcttggttcatatttttttt |
23395542 |
T |
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| Q |
218 |
ctccttttcaagaattcagctgttaaaatatctgtcgtttgatcgattgatatatcattttcaaaatcctttttgtcaatgatggaaactgagtgtggac |
317 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23395543 |
ctccttttcaagaattcagctgttaaagtatatgtcgtttgatcgactgatatatcatcttcaaaatcctttttgtcaatgatggaaactgagtgtggac |
23395642 |
T |
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| Q |
318 |
atttccctcaaccataactattcacacagtttggttccacgttaacgtcctttg |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23395643 |
atttccctcaaccataactattcacacagtttggttccacgttaacgtcctttg |
23395696 |
T |
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