View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16165_high_12 (Length: 367)
Name: NF16165_high_12
Description: NF16165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16165_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 48968837 - 48968978
Alignment:
| Q |
19 |
gggttctcgtttaagaaggaacgccagttcaagaatcatttttctaaataaaggacggtttgtttgaccaaatttgtaacactcctcggttaacaaattc |
118 |
Q |
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| T |
48968837 |
gggttctcgtttaagaaggaacgccagtttaaaaatcatttttctaaataaaggacggttcgtttgaccaaatttgtaacactcctcggttaacaaattc |
48968936 |
T |
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| Q |
119 |
ttaatcaactaaaattaaacactcattagcttttgattcaaa |
160 |
Q |
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| T |
48968937 |
ttaatcaactaaaattaaacactcattagcttttgattcaaa |
48968978 |
T |
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Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 209 - 358
Target Start/End: Original strand, 48969009 - 48969153
Alignment:
| Q |
209 |
gaggtagggggaatgtacttgtagtacattacattgaatcagagtttaattttaatttagaatttgnnnnnnnnnncttccggaatttttagaatttact |
308 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
48969009 |
gaggtagggggaatgtacttgtagtacatt-----gaatcagagtttaattttaatttagaatttgttttttttttcttccggaatttttagaatttact |
48969103 |
T |
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| Q |
309 |
atttatcgtataatgtgcgaaaacgtttacacatccaatgtatttctttt |
358 |
Q |
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| T |
48969104 |
atttatcgtataatgtgcgaaaacgtttacacctccaatgtatttctttt |
48969153 |
T |
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