View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16165_high_9 (Length: 402)
Name: NF16165_high_9
Description: NF16165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16165_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 23 - 397
Target Start/End: Original strand, 30901266 - 30901643
Alignment:
| Q |
23 |
aatttctttctaacttgtatgatgcacaattacatattaatgtgggataaatgttggaaggctagtatgttgggtaacaaataatgaatggtagcttcca |
122 |
Q |
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| T |
30901266 |
aatttctttctaacttgtatgatacacaattacagattaatgtgggataaatgttggaaggctagtacgttgggtaacaaagaatgaatggtagcttcca |
30901365 |
T |
|
| Q |
123 |
agttatcgacaaaacttggt-gnnnnnnngt--taggcaaaagattctttaagcacaatatatcatcaactacgttaatttgttaataaataacttactc |
219 |
Q |
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|||||||||||||||||||| || ||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30901366 |
agttatcgacaaaacttggtaaaaaaatagttatagacaaaagtttctttaaacacaatatatcatcaactacgttaatttgttaataaataacttactc |
30901465 |
T |
|
| Q |
220 |
nnnnnnngaaagatagatagctttgtaaagctgtaagaactaaga-nnnnnnnnnnaggaaaggaactaagatgnnnnnnnnnattcattagtaaacaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
30901466 |
tttttttgaaagatagatagctttgtaaagctgtaagaactaagatttttttttttaggaaaggaactaagatg-ttttttttattcattagtaaacaat |
30901564 |
T |
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| Q |
319 |
tattagttgagtctgtgactgcccttgtcgaatnnnnnnnnnctgagatcaagttctactctcacacattcttctctct |
397 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30901565 |
tattagttgagtctgtgactgcccttgtcgaataaaaaaaaactgagatcaagttctactctcacacattcttctctct |
30901643 |
T |
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