View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16165_low_1 (Length: 983)

Name: NF16165_low_1
Description: NF16165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16165_low_1
NF16165_low_1
[»] chr6 (10 HSPs)
chr6 (515-963)||(3046611-3047071)
chr6 (555-641)||(30627858-30627948)
chr6 (555-641)||(27909009-27909100)
chr6 (555-641)||(17265744-17265834)
chr6 (589-641)||(30895257-30895309)
chr6 (578-641)||(9077648-9077711)
chr6 (591-641)||(21162423-21162473)
chr6 (562-641)||(28630795-28630878)
chr6 (555-641)||(2972199-2972289)
chr6 (584-641)||(12450419-12450476)
[»] chr7 (20 HSPs)
chr7 (12-358)||(10008200-10008547)
chr7 (356-542)||(10007701-10007889)
chr7 (555-641)||(13807277-13807363)
chr7 (555-641)||(36245399-36245489)
chr7 (555-641)||(8566104-8566194)
chr7 (555-641)||(28677340-28677430)
chr7 (555-641)||(39153310-39153400)
chr7 (555-641)||(48838347-48838437)
chr7 (556-641)||(6838411-6838500)
chr7 (555-641)||(29365644-29365734)
chr7 (589-641)||(24163342-24163394)
chr7 (589-640)||(40176060-40176111)
chr7 (578-641)||(45533292-45533355)
chr7 (555-641)||(2523793-2523883)
chr7 (555-629)||(2610222-2610300)
chr7 (555-641)||(11668038-11668128)
chr7 (555-641)||(30869209-30869299)
chr7 (555-634)||(10462412-10462495)
chr7 (590-640)||(40142797-40142847)
chr7 (584-641)||(2680881-2680938)
[»] chr2 (17 HSPs)
chr2 (555-641)||(11030215-11030305)
chr2 (518-636)||(7943467-7943589)
chr2 (555-641)||(41153134-41153224)
chr2 (555-641)||(9152402-9152492)
chr2 (555-641)||(12962740-12962830)
chr2 (555-641)||(32457236-32457326)
chr2 (555-636)||(38983027-38983112)
chr2 (555-642)||(20555293-20555383)
chr2 (583-641)||(29988959-29989017)
chr2 (555-641)||(38554481-38554571)
chr2 (572-636)||(32487046-32487110)
chr2 (589-641)||(36881600-36881652)
chr2 (578-641)||(28014335-28014398)
chr2 (583-641)||(28494771-28494829)
chr2 (555-641)||(3837433-3837523)
chr2 (555-641)||(10204961-10205051)
chr2 (555-641)||(30758743-30758832)
[»] chr3 (11 HSPs)
chr3 (554-641)||(23222981-23223072)
chr3 (555-641)||(19649602-19649692)
chr3 (555-635)||(44518071-44518155)
chr3 (513-641)||(21662880-21663011)
chr3 (555-641)||(9236122-9236212)
chr3 (589-641)||(13622510-13622562)
chr3 (589-641)||(51517030-51517082)
chr3 (555-635)||(25954051-25954135)
chr3 (555-634)||(52864986-52865069)
chr3 (555-641)||(12747720-12747810)
chr3 (696-741)||(38868131-38868176)
[»] chr5 (9 HSPs)
chr5 (551-641)||(33478138-33478232)
chr5 (558-641)||(13664969-13665052)
chr5 (556-642)||(919664-919754)
chr5 (555-641)||(5002163-5002253)
chr5 (555-641)||(18473510-18473600)
chr5 (555-641)||(34297197-34297287)
chr5 (517-641)||(11931967-11932095)
chr5 (583-641)||(21488306-21488364)
chr5 (555-636)||(36434706-36434791)
[»] chr4 (13 HSPs)
chr4 (555-641)||(48361087-48361177)
chr4 (555-641)||(30191931-30192021)
chr4 (555-641)||(44111768-44111858)
chr4 (555-641)||(48195925-48196015)
chr4 (583-641)||(32714292-32714350)
chr4 (584-641)||(4386204-4386261)
chr4 (590-641)||(50121511-50121562)
chr4 (578-636)||(17284763-17284821)
chr4 (589-638)||(42169069-42169118)
chr4 (557-641)||(35429796-35429884)
chr4 (590-641)||(50685479-50685530)
chr4 (578-640)||(3162957-3163019)
chr4 (555-612)||(38785802-38785859)
[»] chr1 (16 HSPs)
chr1 (555-641)||(34332511-34332601)
chr1 (555-637)||(38590093-38590179)
chr1 (555-641)||(38737954-38738044)
chr1 (555-641)||(44939089-44939179)
chr1 (555-629)||(50155333-50155411)
chr1 (555-641)||(18744594-18744680)
chr1 (555-641)||(11386190-11386279)
chr1 (551-641)||(15342968-15343062)
chr1 (555-641)||(26070859-26070949)
chr1 (555-641)||(38040299-38040389)
chr1 (555-641)||(49944868-49944958)
chr1 (589-641)||(15286032-15286084)
chr1 (555-641)||(6661549-6661639)
chr1 (555-640)||(519857-519946)
chr1 (589-641)||(26760196-26760248)
chr1 (589-641)||(26924286-26924338)
[»] chr8 (10 HSPs)
chr8 (556-641)||(8793755-8793844)
chr8 (555-641)||(5031499-5031589)
chr8 (555-641)||(42122989-42123079)
chr8 (578-641)||(35149691-35149754)
chr8 (578-636)||(8803290-8803348)
chr8 (555-612)||(13964467-13964528)
chr8 (589-641)||(24618981-24619033)
chr8 (555-642)||(8453617-8453707)
chr8 (555-641)||(3236365-3236455)
chr8 (584-641)||(40483306-40483363)
[»] scaffold0236 (1 HSPs)
scaffold0236 (557-638)||(16677-16762)


Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 515 - 963
Target Start/End: Original strand, 3046611 - 3047071
Alignment:
Q  515 tattactccctccggtcctatttttaagnnnnnnnnt-gaatttttagattcattgagtaattgatctggtctacaatatagaccacatacatcatttaa 613  Q
    ||||||||||||||||||||||||||||          ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3046611 tattactccctccggtcctatttttaagaaaaaaaaaagaatttttaaattcattgagtaattgatctggtctacaatatagaccacatacatcatttaa 3046710  T
Q  614 gtaatgaattaaaaaagtcaaatgtttcccgtgaacactcgttaacattcccctttaataaattaagctttttcggttagaatgttaatttccatttgag 713  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3046711 gtaatgaattaaaaaagtcaaatgtttcctgtgaacactcgttaacattcccctttaataaattaagctttttcggttagaatgttaatttccatttgag 3046810  T
Q  714 tatgaaagttgatatctcttctttggcacggtaaggtactaaggttgctgtagaatgtgcctggttttggctgtgatggagcattga-ttttttcgatat 812  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||    
T  3046811 tatgaaagttgatatctcttctttggcacggtaaggtactaaggttgctgtagaatgtgcctggttttggctgtgatggaccgttgatttttttcgatat 3046910  T
Q  813 ggtttagtgttttgttaggagttgtattgtataatagaggttatttgtggctgtttttctggttttgacaagcataa----------acttggtttggat 902  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||    
T  3046911 ggtttagtgttttgttaggagttgtattgtataatagaggttatttgtggctgtttttctggttttgacaagcataaacttggttttacttggtttggat 3047010  T
Q  903 tagctttttggtctgctgttatttgcatctgattttacaaattgatttaatgttttgtttg 963  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3047011 tagctttttggtgtgctgttatttgcatctgattttacaaattgatttaatgttttgtttg 3047071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 555 - 641
Target Start/End: Original strand, 30627858 - 30627948
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||| ||| ||||||||||||||    || ||||| ||||||||||| |||||||||||| | ||||||| | ||||||||||||||||    
T  30627858 tttttatatttattgagtaattgatgtatcttgtctaaaatatagaccaaatacatcatttatgcaatgaatcagaaaagtcaaatgtttc 30627948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 555 - 641
Target Start/End: Original strand, 27909009 - 27909100
Alignment:
Q  555 tttttagattca-ttgagtaattgatct----ggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||| ||||||||||||| |    |||||| |||||||| || |||||||| |||   ||||||||||||||||||||||||||    
T  27909009 tttttagattcaattgagtaattgatgtatccggtctaaaatatagatcaaatacatcaattattcaatgaattaaaaaagtcaaatgtttc 27909100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 17265834 - 17265744
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||| |||||| |||||||||||    || ||||| ||||||||| | |||| ||||||| | ||||||| ||||||||||||||||||    
T  17265834 tttttaaattcatcgagtaattgatgtatcttgtctagaatatagactaaatacgtcatttatgcaatgaatcaaaaaagtcaaatgtttc 17265744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 589 - 641
Target Start/End: Original strand, 30895257 - 30895309
Alignment:
Q  589 aatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||||||||| ||| |||||||| | ||||||| ||||||||||||||||||    
T  30895257 aatatagaccaaatatatcatttatgcaatgaatcaaaaaagtcaaatgtttc 30895309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 641
Target Start/End: Original strand, 9077648 - 9077711
Alignment:
Q  578 atctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||| ||||| ||||||||||| || ||||||||| | ||||||| ||||||||||||| ||||    
T  9077648 atcttgtctagaatatagaccaaatgcatcatttatgcaatgaatcaaaaaagtcaaatatttc 9077711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 591 - 641
Target Start/End: Complemental strand, 21162473 - 21162423
Alignment:
Q  591 tatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||||||| |||||| ||||| | |||||||||||||||| |||||||||    
T  21162473 tatagaccatatacattatttatgcaatgaattaaaaaagttaaatgtttc 21162423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 562 - 641
Target Start/End: Original strand, 28630795 - 28630878
Alignment:
Q  562 attcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||||||||||||||||    || ||||| ||||||||||| |||||| ||||| | |||||||  |||||||||| ||||||    
T  28630795 attcattgagtaattgatgtatcttgtctataatatagaccaaatacataatttatgcaatgaatctaaaaagtcaattgtttc 28630878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 555 - 641
Target Start/End: Original strand, 2972199 - 2972289
Alignment:
Q  555 tttttagattcattgagtaattg----atctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||| ||||||||||||    ||||  |||| ||||||||| | |||||||||||| | ||||||| ||||| ||| ||||||||    
T  2972199 tttttagatttattgagtaattggtgtatcttatctaaaatatagacaaaatacatcatttatgcaatgaatcaaaaacgtctaatgtttc 2972289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 584 - 641
Target Start/End: Original strand, 12450419 - 12450476
Alignment:
Q  584 tctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||| ||||||||  | |||||||||||| | ||||||||||||||||||||| ||||    
T  12450419 tctaaaatatagattaaatacatcatttatgcaatgaattaaaaaagtcaaatatttc 12450476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 358
Target Start/End: Complemental strand, 10008547 - 10008200
Alignment:
Q  12 aaaggagcataaacattaactagaataaactcctcgttagttttcacaaagcttccatcaatcaaaagaacatgattgaaagtaaaagacaaccacacct 111  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||    
T  10008547 aaaggaacataaacattaactagaataaactcctcattagttttcacaaagcttccattaatcaaaagaacatgattgaaagtaaaggacaaccagacct 10008448  T
Q  112 caacctcaaggcaatcccaaataattaccatacctcctgagcaccaactaaagaacaaaaagaatagacatgaggcaagctgccttaaataggaggacat 211  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||    
T  10008447 caacctcaaggcaatcccaaataattatcatacctcctgagcaccaactaaagaataaaaagaatagacatgaggcaagctgccctatataggaggacat 10008348  T
Q  212 aacagatcatcaatataacataacttggtttttcaatttaaaaaatagatgaccacgtatcacccaccaattatcaaacctccaacctcttctcaaaacc 311  Q
    |||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  10008347 aacagatcatcaatataacataacttggattttcaatttagataatagatgaccacgtatcacccaccaaatgtcaaacctccaacctcttctcaaaacc 10008248  T
Q  312 cctca-ccccgtacattctaagaaataatcttcattaaatacatattc 358  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10008247 cctcacccccgtacattctaagaaataatcttcattaaatacatattc 10008200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 356 - 542
Target Start/End: Complemental strand, 10007889 - 10007701
Alignment:
Q  356 ttcttgcaaatatttatttctaatagcacgtcatcgttttttgtcacatgaagc--ctcttttctatccttacacggtaaaccaagcaaccattttcaaa 453  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||  |||||||| |||||||||||||||||| ||||||||||||||||    
T  10007889 ttcttgcaaatatttatttctaatagcacgtcgtcgtttttcgtcacatgaagcacctcttttccatccttacacggtaaaccgagcaaccattttcaaa 10007790  T
Q  454 ctgtgcacttaatgtctcactaaaccacctactttccttctagtcgaatggtgtccaacattattactccctccggtcctatttttaag 542  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  10007789 ctgtgcacttaatgtctcagtaaaccacctactttccttctagtcgaatggtgtccaaaattattactccctccggtcctatttataag 10007701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 555 - 641
Target Start/End: Original strand, 13807277 - 13807363
Alignment:
Q  555 tttttagattcattgagtaattgatctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||||||||||||||||  | || |||||||| || ||| |||||||| ||||||||| ||||||||||||||||||    
T  13807277 tttttagattcattgagtaattgatcttctttagaatatagatcaaatatatcatttatgtaatgaatcaaaaaagtcaaatgtttc 13807363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 36245489 - 36245399
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||||||||||||||    || ||||| ||||||||||| |||||||||||| | ||||||| ||||||||||||||||||    
T  36245489 tttttagattcattgagtaattgatgtatcttgtctagaatatagaccaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttc 36245399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 8566194 - 8566104
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||||||||||||||    || ||||| ||||||||||| |||||||||||| | ||||||| |||||||| |||||||||    
T  8566194 tttttagattcattgagtaattgatgtatcttgtctagaatatagaccaaatacatcatttatgcaatgaatcaaaaaagttaaatgtttc 8566104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 28677430 - 28677340
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||| ||||||||||||||    || ||||| ||||||||||| |||||||||||| | ||||||| ||||||||||||||||||    
T  28677430 tttttagatttattgagtaattgatgtatcttgtctagaatatagaccaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttc 28677340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 39153400 - 39153310
Alignment:
Q  555 tttttagattcattgagtaattgatct----ggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||||| ||||||||||||||||| |    |||||| ||||||||| | |||||||||||| | ||||||| ||||||||||||||||||    
T  39153400 tttttagcttcattgagtaattgatgtatttggtctataatatagactaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttc 39153310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 555 - 641
Target Start/End: Original strand, 48838347 - 48838437
Alignment:
Q  555 tttttagattcattgagtaattgatct----ggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||||||||||||||| |||| || |    ||| || ||||||||||| |||||||||||| |||||||||||||||||| |||||||||    
T  48838347 tttttagattcattgagcaattaatgtatttggtataaaatatagaccaaatacatcatttatgtaatgaattaaaaaagttaaatgtttc 48838437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 556 - 641
Target Start/End: Original strand, 6838411 - 6838500
Alignment:
Q  556 ttttagattcattgagtaatt----gatctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||| ||||||||||||||||     |||| ||||| ||||||||||| |||||||||||| | ||||||| ||||||||||||||||||    
T  6838411 tttttgattcattgagtaattaatgtatcttgtctagaatatagaccaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttc 6838500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 29365734 - 29365644
Alignment:
Q  555 tttttagattcattgagtaattgatct----ggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||||||||||| || |    ||| || |||||||| || |||||||||||| | |||| |||||||||||||||||||||    
T  29365734 tttttagattcattgagtaattaatgtatttggtatagaatatagatcaaatacatcatttatgcaatgtattaaaaaagtcaaatgtttc 29365644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 589 - 641
Target Start/End: Original strand, 24163342 - 24163394
Alignment:
Q  589 aatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||||||||| |||||||||||| | |||||||||||||||| |||||||||    
T  24163342 aatatagaccatatacatcatttatgcaatgaattaaaaaagtgaaatgtttc 24163394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 589 - 640
Target Start/End: Complemental strand, 40176111 - 40176060
Alignment:
Q  589 aatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgttt 640  Q
    ||||||||||| |||||||||||||| ||||||| |||||||| ||||||||    
T  40176111 aatatagaccaaatacatcatttaagcaatgaataaaaaaagtgaaatgttt 40176060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 578 - 641
Target Start/End: Original strand, 45533292 - 45533355
Alignment:
Q  578 atctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||| ||||| ||||||||||| |||||| |||||   ||||||||||||||||||||||||||    
T  45533292 atcttgtctagaatatagaccaaatacattatttatacaatgaattaaaaaagtcaaatgtttc 45533355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 2523883 - 2523793
Alignment:
Q  555 tttttagattcattgagtaattgatct----ggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||||||||||| || |    ||  || ||||||||||| ||||||| |||| | ||||||| ||||||||||||||||||    
T  2523883 tttttagattcattgagtaattaatgtacttggcatagaatatagaccagatacatcgtttatgcaatgaatcaaaaaagtcaaatgtttc 2523793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 555 - 629
Target Start/End: Original strand, 2610222 - 2610300
Alignment:
Q  555 tttttagattcattgagtaattgatct----ggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaa 629  Q
    |||||| |||||||||||||||||| |    |||||| ||||||||| | |||||||||||| | ||||||||||||||    
T  2610222 tttttaaattcattgagtaattgatgtatttggtctagaatatagactaaatacatcatttatgcaatgaattaaaaaa 2610300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 11668128 - 11668038
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||| ||||||||| ||||||||    || ||||| |||||||| || ||| |||||||| | ||||||| ||||||||||||||||||    
T  11668128 tttttacattcattgattaattgatgtatcttgtctagaatatagatcaaatatatcatttatgcaatgaatcaaaaaagtcaaatgtttc 11668038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 30869299 - 30869209
Alignment:
Q  555 tttttagattcattgagtaattg----atctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||||||||||||    |||| ||||| ||||||||||| |||||| |||||   ||| ||| ||||| ||||||||||||    
T  30869299 tttttagattcattgagtaattgatgtatcttgtctagaatatagaccaaatacattatttatacaataaatcaaaaacgtcaaatgtttc 30869209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 555 - 634
Target Start/End: Original strand, 10462412 - 10462495
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaa 634  Q
    |||||||||||||||||| ||||||    || ||||| |||||| |||| |||||||||||| | ||||||| ||||| |||||    
T  10462412 tttttagattcattgagtgattgatgtatcttgtctaaaatatataccaaatacatcatttatgcaatgaataaaaaatgtcaa 10462495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 590 - 640
Target Start/End: Complemental strand, 40142847 - 40142797
Alignment:
Q  590 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgttt 640  Q
    |||||||||| |||||| ||||| | ||||||| |||||||||||||||||    
T  40142847 atatagaccaaatacattatttatgcaatgaatcaaaaaagtcaaatgttt 40142797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 584 - 641
Target Start/End: Complemental strand, 2680938 - 2680881
Alignment:
Q  584 tctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||| |||||||| || ||||||||||||  |||||||| ||||||||||||| ||||    
T  2680938 tctagaatatagatcaaatacatcatttatataatgaatcaaaaaagtcaaatatttc 2680881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 11030305 - 11030215
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||||||||||||||    ||| | || ||||||||||| |||||||||||| ||||||||| ||||||||||||||||||    
T  11030305 tttttagattcattgagtaattgatgtatctgatatagaatatagaccaaatacatcatttatgtaatgaatcaaaaaagtcaaatgtttc 11030215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 518 - 636
Target Start/End: Complemental strand, 7943589 - 7943467
Alignment:
Q  518 tactccctccggtcctatttttaagnnnnnnnntgaatttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaa 613  Q
    |||||||||||||||||||| ||||        ||| |||||||||||||||| ||||||||    || ||||||||||||||||| ||| ||||||||     
T  7943589 tactccctccggtcctatttataagaaaaaaattgactttttagattcattgaataattgatgtatcttgtctacaatatagaccaaatatatcatttat 7943490  T
Q  614 gtaatgaattaaaaaagtcaaat 636  Q
    | ||||||| |||||||||||||    
T  7943489 gcaatgaataaaaaaagtcaaat 7943467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 41153224 - 41153134
Alignment:
Q  555 tttttagattcattgagtaattgatct----ggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||||||||||||||||||||||| |    ||| || ||||||||||| |||||||||||| | ||||||| ||||||||||||||||||    
T  41153224 tttttagattcattgagtaattgatgtatttggtttataatatagaccaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttc 41153134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 9152492 - 9152402
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||||||||||||||    || ||||| ||||||||||| |||||||| |||  |||||| | ||||||||||||||||||    
T  9152492 tttttagattcattgagtaattgatgtatctagtctaaaatatagaccaaatacatcaattatttaatgactcaaaaaagtcaaatgtttc 9152402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 555 - 641
Target Start/End: Original strand, 12962740 - 12962830
Alignment:
Q  555 tttttagattcattgagtaattgatct----ggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||||||||||| || |    ||| || ||||||||||| |||||||||||| | ||||||| ||||||||||||||||||    
T  12962740 tttttagattcattgagtaattaatgtacttggtataaaatatagaccaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttc 12962830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 32457326 - 32457236
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||| ||||||||||    || ||||| ||||||||| | |||||||||||| | ||||||| ||||||||||||| ||||    
T  32457326 tttttagattcattaagtaattgatgtatcttgtctagaatatagactaaatacatcatttatgcaatgaatcaaaaaagtcaaatatttc 32457236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 555 - 636
Target Start/End: Complemental strand, 38983112 - 38983027
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaat 636  Q
    ||||||||||||||| |||||||||    || ||||| ||||||||| | |||||||||||| | ||||||| |||||||||||||    
T  38983112 tttttagattcattgtgtaattgatgtatcttgtctagaatatagacaaaatacatcatttatgcaatgaatcaaaaaagtcaaat 38983027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 555 - 642
Target Start/End: Original strand, 20555293 - 20555383
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttcc 642  Q
    ||||||||| |||||| ||||||||    || ||||| ||||||||||| |||||| ||||| |||||||| ||||||||| ||||||||||    
T  20555293 tttttagatacattgaataattgatgtatcttgtctagaatatagaccaaatacattatttatgtaatgaa-taaaaaagttaaatgtttcc 20555383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 583 - 641
Target Start/End: Original strand, 29988959 - 29989017
Alignment:
Q  583 gtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||| |||||||| || |||||||||||| | ||||||| ||||||||||||||||||    
T  29988959 gtctagaatatagatcaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttc 29989017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 38554571 - 38554481
Alignment:
Q  555 tttttagattcattgagtaattgatct----ggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||| ||||||||||||||| || |    ||| || ||||||||||| |||||| ||||| ||||||||| |||| |||||||||||||    
T  38554571 tttttaaattcattgagtaattaatgtacttggtatagaatatagaccaaatacattatttatgtaatgaatcaaaatagtcaaatgtttc 38554481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 572 - 636
Target Start/End: Original strand, 32487046 - 32487110
Alignment:
Q  572 taattgatctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaat 636  Q
    ||||| |||| |||||| |||||||||| |||||| ||||| | ||||||| |||||||||||||    
T  32487046 taattaatcttgtctacgatatagaccaaatacattatttatgcaatgaatcaaaaaagtcaaat 32487110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 589 - 641
Target Start/End: Original strand, 36881600 - 36881652
Alignment:
Q  589 aatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||||||||| || ||| ||||| ||||||||| ||||||||||||||||||    
T  36881600 aatatagaccaaattcattatttatgtaatgaatcaaaaaagtcaaatgtttc 36881652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 641
Target Start/End: Original strand, 28014335 - 28014398
Alignment:
Q  578 atctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||| ||||| | ||||||||| |||||||||||| | ||||||| ||||| ||||||||||||    
T  28014335 atcttgtctatagtatagaccaaatacatcatttatgcaatgaataaaaaaggtcaaatgtttc 28014398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 583 - 641
Target Start/End: Original strand, 28494771 - 28494829
Alignment:
Q  583 gtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||| ||||||||||| ||| |||||||| | ||||||| |||||| |||||||||||    
T  28494771 gtctagaatatagaccaaatatatcatttatgcaatgaatcaaaaaaatcaaatgtttc 28494829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 3837523 - 3837433
Alignment:
Q  555 tttttagattcattgagtaattgatctg----gtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||| ||| |||||||||||||||||     || || ||||||||||| |||||| ||||| | ||||||| |||||| |||||||||||    
T  3837523 tttttcgatgcattgagtaattgatctatcttgtttaaaatatagaccaaatacattatttatgcaatgaatcaaaaaaatcaaatgtttc 3837433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 555 - 641
Target Start/End: Original strand, 10204961 - 10205051
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||||||||||||||| |||||||    || ||||| ||||||||| | ||||||||||||   ||||||| |||| |||||||| ||||    
T  10204961 tttttagattcattgagcaattgatgtatcttgtctaaaatatagactaaatacatcatttatacaatgaatcaaaagagtcaaatatttc 10205051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 30758832 - 30758743
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||| ||||||||||||||    || ||||| | ||||||||| ||||| |||||| | ||||||| ||||||||||||| ||||    
T  30758832 tttttagatt-attgagtaattgatgtatcttgtctaaagtatagaccaaatacaccatttatgcaatgaataaaaaaagtcaaatatttc 30758743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 3e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 554 - 641
Target Start/End: Complemental strand, 23223072 - 23222981
Alignment:
Q  554 atttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||||||||||||||||||| ||||    || ||||| ||||||||||| ||||||||||||  |||| ||||||||||||||||||||||    
T  23223072 atttttagattcattgagtaactgatgtatcttgtctaaaatatagaccaaatacatcatttatataataaattaaaaaagtcaaatgtttc 23222981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 19649692 - 19649602
Alignment:
Q  555 tttttagattcattgagtaattgatct----ggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||||||||||||||||||||||| |    |||||| ||||||||| | |||||||| |||   ||||||| ||||||||||||||||||    
T  19649692 tttttagattcattgagtaattgatgtattcggtctaaaatatagactaaatacatcaattattcaatgaatcaaaaaagtcaaatgtttc 19649602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 555 - 635
Target Start/End: Original strand, 44518071 - 44518155
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaa 635  Q
    |||||||||||||||||||||| ||    || ||||| ||||||||||| ||||||||||||   ||||||| ||||||||||||    
T  44518071 tttttagattcattgagtaattaatgtatcttgtctaaaatatagaccaaatacatcatttagacaatgaatcaaaaaagtcaaa 44518155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 513 - 641
Target Start/End: Original strand, 21662880 - 21663011
Alignment:
Q  513 attattactccctccggtcctatttttaagnnnnnnnntgaatttttagattcattgagtaattgatct----ggtctacaatatagaccacatacatca 608  Q
    |||| |||||||||||||||||||| ||||        ||| |||||||||||||||||||||| || |    ||| || | ||||||||| ||||||||    
T  21662880 attaatactccctccggtcctatttataagaaaaagt-tgactttttagattcattgagtaattaatgtacttggtatagattatagaccaaatacatca 21662978  T
Q  609 tttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||| | ||||||| |||||||| |||||||||    
T  21662979 tttatgcaatgaatcaaaaaagttaaatgtttc 21663011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 555 - 641
Target Start/End: Original strand, 9236122 - 9236212
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||| |||||||||||||||||||    ||| | || ||||||||| | ||| |||||||| ||||||||| ||||||||||||| ||||    
T  9236122 ttttttgattcattgagtaattgatgtatctgatatagaatatagactaaatatatcatttatgtaatgaatcaaaaaagtcaaatatttc 9236212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 589 - 641
Target Start/End: Complemental strand, 13622562 - 13622510
Alignment:
Q  589 aatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||||||||| ||| |||||||| | |||||| |||||||||||||||||||    
T  13622562 aatatagaccaaatatatcatttatgcaatgaactaaaaaagtcaaatgtttc 13622510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 589 - 641
Target Start/End: Original strand, 51517030 - 51517082
Alignment:
Q  589 aatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||||||||| |||||||||||| | ||||||  ||||||||||||||||||    
T  51517030 aatatagaccaaatacatcatttatgcaatgaaccaaaaaagtcaaatgtttc 51517082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 555 - 635
Target Start/End: Complemental strand, 25954135 - 25954051
Alignment:
Q  555 tttttagattcattgagtaatt----gatctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaa 635  Q
    |||||| |||||||||||||||     |||| ||||| |||||||| || ||| ||||||||  |||||||||||||||||||||    
T  25954135 tttttaaattcattgagtaattaatgtatcttgtctagaatatagatcaaatatatcatttatataatgaattaaaaaagtcaaa 25954051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 555 - 634
Target Start/End: Original strand, 52864986 - 52865069
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaa 634  Q
    |||||||||||||||||||||||||    ||  |||| ||||||||| | ||| |||||||| | ||||||| |||||||||||    
T  52864986 tttttagattcattgagtaattgatgtatcttatctaaaatatagactaaatatatcatttatgcaatgaatcaaaaaagtcaa 52865069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 12747810 - 12747720
Alignment:
Q  555 tttttagattcattgagtaattgatct----ggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||||||||||| ||||||||||| |    |||||| |||||| |||| |||||  ||||| | ||||||| |||||| |||||||||||    
T  12747810 tttttagattcatcgagtaattgatgtatttggtctagaatatacaccaaatacacaatttatgcaatgaatcaaaaaaatcaaatgtttc 12747720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 696 - 741
Target Start/End: Complemental strand, 38868176 - 38868131
Alignment:
Q  696 tgttaatttccatttgagtatgaaagttgatatctcttctttggca 741  Q
    ||||||||||||||||||||||||| | ||||||| || |||||||    
T  38868176 tgttaatttccatttgagtatgaaaatggatatctattgtttggca 38868131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 1e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 551 - 641
Target Start/End: Original strand, 33478138 - 33478232
Alignment:
Q  551 tgaatttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||||||||||||||||||    || ||||| ||||||| ||| |||||||||||| | ||||||| ||||| ||||||||||||    
T  33478138 tgaatttttagattcattgagtaattgatgtatctcgtctagaatataggccaaatacatcatttatgcaatgaatcaaaaatgtcaaatgtttc 33478232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 558 - 641
Target Start/End: Complemental strand, 13665052 - 13664969
Alignment:
Q  558 ttagattcattgagtaattgatctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||||||||||||||||  || | || || |||||||| || |||||||||||| | ||| ||||||||||||||||||||||    
T  13665052 ttagattcattgagtaatgtatgttgtttagaatatagatcaaatacatcatttatgcaattaattaaaaaagtcaaatgtttc 13664969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 556 - 642
Target Start/End: Complemental strand, 919754 - 919664
Alignment:
Q  556 ttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttcc 642  Q
    ||||||||||||||||||||||||    || || || ||||||||||| ||||||||||||   ||||||| ||||||||||||| |||||    
T  919754 ttttagattcattgagtaattgatgtatctagtatagaatatagaccaaatacatcatttattgaatgaatcaaaaaagtcaaatatttcc 919664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 5002253 - 5002163
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||| ||||||||||||||    || ||||| |||||||| || |||||||||||| | ||| ||| ||||||||||||||||||    
T  5002253 tttttagatttattgagtaattgatgtatcttgtctaaaatatagatcaaatacatcatttatgcaattaatcaaaaaagtcaaatgtttc 5002163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 555 - 641
Target Start/End: Original strand, 18473510 - 18473600
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||||||||||||||    || ||||| |||||||| || || |||||||||   ||||||| ||||||||||||||||||    
T  18473510 tttttagattcattgagtaattgatgtatcttgtctagaatatagatcaaatgcatcatttatacaatgaatcaaaaaagtcaaatgtttc 18473600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 34297287 - 34297197
Alignment:
Q  555 tttttagattcattgagtaattgatctg----gtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||| |||||||||| ||    ||||| |||||||| ||  ||||||||||| | ||||||||||||||||||||| ||||    
T  34297287 tttttagattcattaagtaattgatgtgtcttgtctaaaatatagatcaattacatcatttatgcaatgaattaaaaaagtcaaatatttc 34297197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 517 - 641
Target Start/End: Original strand, 11931967 - 11932095
Alignment:
Q  517 ttactccctccggtcctatttttaagnnnnnnnntgaatttttagattcattgagtaatt----gatctggtctacaatatagaccacatacatcattta 612  Q
    ||||||||||||||||||||| ||||        ||| ||||||||||||||| ||||||     |||| ||||| ||||||||||| ||||||||||||    
T  11931967 ttactccctccggtcctatttataagaaaaaaattgactttttagattcattgtgtaattaatgtatcttgtctaaaatatagaccaaatacatcattta 11932066  T
Q  613 agtaatgaattaaaaaagtcaaatgtttc 641  Q
      |||| ||| |||||| | |||||||||    
T  11932067 tataataaatcaaaaaaattaaatgtttc 11932095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 583 - 641
Target Start/End: Complemental strand, 21488364 - 21488306
Alignment:
Q  583 gtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||| ||||||||||| |||||| ||||| | ||||||||||||||||||||| ||||    
T  21488364 gtctagaatatagaccaaatacattatttatgcaatgaattaaaaaagtcaaatatttc 21488306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 555 - 636
Target Start/End: Complemental strand, 36434791 - 36434706
Alignment:
Q  555 tttttagattcattgagtaattg----atctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaat 636  Q
    |||||||||||||| ||||||||    |||| ||||| |||||| |||| ||| |||||||| ||||||||| |||||| ||||||    
T  36434791 tttttagattcattaagtaattgatgtatcttgtctaaaatataaaccaaatatatcatttatgtaatgaataaaaaaaatcaaat 36434706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 1e-16; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 555 - 641
Target Start/End: Original strand, 48361087 - 48361177
Alignment:
Q  555 tttttagattcattgagtaattgatctg----gtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||||||||||||||||||||||| |     ||||| ||||||||||| |||||||||||| | ||||||| ||||||||||||||||||    
T  48361087 tttttagattcattgagtaattgatgtattttgtctagaatatagaccaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttc 48361177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 555 - 641
Target Start/End: Original strand, 30191931 - 30192021
Alignment:
Q  555 tttttagattcattgagtaattgatctg----gtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||||||||||||||||||||||| |     ||||| ||||||||||| |||||||||||| | ||||||| |||||||| |||||||||    
T  30191931 tttttagattcattgagtaattgatgtattttgtctagaatatagaccaaatacatcatttatgcaatgaatcaaaaaagttaaatgtttc 30192021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 44111858 - 44111768
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||||||||||||||    ||  | || ||||||||||| |||||||||||| ||||| ||| ||||||||||||||||||    
T  44111858 tttttagattcattgagtaattgatgtatcttctttagaatatagaccaaatacatcatttatgtaattaatcaaaaaagtcaaatgtttc 44111768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 555 - 641
Target Start/End: Original strand, 48195925 - 48196015
Alignment:
Q  555 tttttagattcattgagtaattga----tctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||| |||||||||||||||||    ||| ||||| ||||||||||| |||||||||||| | ||||||  ||||||||||||||||||    
T  48195925 tttttaaattcattgagtaattgacgtatcttgtctagaatatagaccaaatacatcatttatgcaatgaaccaaaaaagtcaaatgtttc 48196015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 583 - 641
Target Start/End: Complemental strand, 32714350 - 32714292
Alignment:
Q  583 gtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||| ||||||||| | |||||||||||| ||||||||| ||||||||||||||||||    
T  32714350 gtctagaatatagactaaatacatcatttatgtaatgaatcaaaaaagtcaaatgtttc 32714292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 584 - 641
Target Start/End: Original strand, 4386204 - 4386261
Alignment:
Q  584 tctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||| | |||||||||||| ||||||||| ||||||||||||| ||||    
T  4386204 tctacaatatagactaaatacatcatttatgtaatgaatcaaaaaagtcaaatttttc 4386261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 590 - 641
Target Start/End: Original strand, 50121511 - 50121562
Alignment:
Q  590 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||| ||| |||||||| | ||||||||||||||||||||||||||    
T  50121511 atatagaccaaatatatcatttatgcaatgaattaaaaaagtcaaatgtttc 50121562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 578 - 636
Target Start/End: Complemental strand, 17284821 - 17284763
Alignment:
Q  578 atctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaat 636  Q
    |||| ||||| |||||||||||||||||||||||| | ||||||| |||||| ||||||    
T  17284821 atcttgtctagaatatagaccacatacatcatttatgcaatgaatcaaaaaaatcaaat 17284763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 638
Target Start/End: Complemental strand, 42169118 - 42169069
Alignment:
Q  589 aatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgt 638  Q
    ||||| ||||| |||||||||||| ||||||||| |||||||||||||||    
T  42169118 aatatggaccaaatacatcatttatgtaatgaatcaaaaaagtcaaatgt 42169069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 641
Target Start/End: Complemental strand, 35429884 - 35429796
Alignment:
Q  557 tttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||| ||||||||||||||    || ||||| ||||||||||| ||||||| |||| | || |||| ||||||||||||| ||||    
T  35429884 tttagattaattgagtaattgatgtatcttgtctagaatatagaccaaatacatcttttatgcaacgaataaaaaaagtcaaatatttc 35429796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 590 - 641
Target Start/End: Complemental strand, 50685530 - 50685479
Alignment:
Q  590 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||| |||||||||||| | ||| ||| ||||||||||||||||||    
T  50685530 atatagaccaaatacatcatttatggaattaataaaaaaagtcaaatgtttc 50685479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 578 - 640
Target Start/End: Original strand, 3162957 - 3163019
Alignment:
Q  578 atctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgttt 640  Q
    |||| ||||| |||||||||   |||||||||||| | ||||||| |||||||||||||||||    
T  3162957 atcttgtctagaatatagactcaatacatcatttatgcaatgaatcaaaaaagtcaaatgttt 3163019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 555 - 612
Target Start/End: Original strand, 38785802 - 38785859
Alignment:
Q  555 tttttagattcattgagtaattgatctggtctacaatatagaccacatacatcattta 612  Q
    ||||||| |||||||| ||| |||| ||||||| |||||||||||| ||||| |||||    
T  38785802 tttttaggttcattgaataaatgatgtggtctataatatagaccacctacataattta 38785859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 555 - 641
Target Start/End: Original strand, 34332511 - 34332601
Alignment:
Q  555 tttttagattcattgagtaattgatctg----gtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||||||||||||||||||||||| |     ||||| ||||||||||| ||||||||||||   ||||||| ||||||||||||||||||    
T  34332511 tttttagattcattgagtaattgatgtattttgtctagaatatagaccaaatacatcatttatccaatgaatcaaaaaagtcaaatgtttc 34332601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 555 - 637
Target Start/End: Complemental strand, 38590179 - 38590093
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatg 637  Q
    |||||||||||||||||||||||||    ||||| || ||||||||||| |||||| ||||| | ||||||| ||||||||||||||    
T  38590179 tttttagattcattgagtaattgatgtatctggtatagaatatagaccaaatacattatttatgaaatgaatcaaaaaagtcaaatg 38590093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 38738044 - 38737954
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||||||||||||||    || ||||| |||||| |||| ||||||| |||| | ||||||| ||||||||||||||||||    
T  38738044 tttttagattcattgagtaattgatgtatcttgtctagaatataaaccaaatacatcctttatgcaatgaatcaaaaaagtcaaatgtttc 38737954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 44939179 - 44939089
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||||||||||||||    ||  |||| ||||||||||| ||||||||||||   ||||||| ||||||||||||||||||    
T  44939179 tttttagattcattgagtaattgatgtatctaatctagaatatagaccaaatacatcatttatacaatgaataaaaaaagtcaaatgtttc 44939089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 555 - 629
Target Start/End: Complemental strand, 50155411 - 50155333
Alignment:
Q  555 tttttagattcattgagtaattgatct----ggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaa 629  Q
    ||||||||||||||||||||||||| |    |||||| ||||||||||| |||||||||||| | ||||||||||||||    
T  50155411 tttttagattcattgagtaattgatgtatttggtctataatatagaccaaatacatcatttatgcaatgaattaaaaaa 50155333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 555 - 641
Target Start/End: Original strand, 18744594 - 18744680
Alignment:
Q  555 tttttagattcattgagtaattg-atctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||||| |||||| || || |||| ||||||||||| |||||||||||| | ||||||| |||||||| |||||||||    
T  18744594 tttttagattcattgaataattgtatttgatctagaatatagacca-atacatcatttatgcaatgaataaaaaaagttaaatgtttc 18744680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 555 - 641
Target Start/End: Original strand, 11386190 - 11386279
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||||| ||||||||    |||||||| ||||||||| | |||||||||||| | |||||| | |||||||||||||||||    
T  11386190 tttttagattcattgaataattgatgtttctggtctagaatatagacgaaatacatcatttatgcaatgaa-tcaaaaagtcaaatgtttc 11386279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 551 - 641
Target Start/End: Original strand, 15342968 - 15343062
Alignment:
Q  551 tgaatttttagattcattgagtaatt----gatctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||||||||||||||||| ||||||     |||| ||||| ||||||||||| |||||||||||| | ||||||| |||||| |||||| ||||    
T  15342968 tgaatttttagattcattgtgtaattaatgtatcttgtctagaatatagaccaaatacatcatttatgcaatgaatcaaaaaaatcaaatatttc 15343062  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 555 - 641
Target Start/End: Original strand, 26070859 - 26070949
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||||||||||||||    ||  |||| ||||||||||| |||||| ||||| | ||||||| |||||||| |||||||||    
T  26070859 tttttagattcattgagtaattgatgtatcttatctagaatatagaccaaatacattatttatgcaatgaatcaaaaaagtaaaatgtttc 26070949  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 38040389 - 38040299
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||||| ||||||||    || ||||| |||||||| || ||| |||||||| | ||||||| ||||||||||||||||||    
T  38040389 tttttagattcattgattaattgatgtatcttgtctagaatatagatcaaatatatcatttatgcaatgaatcaaaaaagtcaaatgtttc 38040299  T

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Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 555 - 641
Target Start/End: Original strand, 49944868 - 49944958
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||||| ||||||||    || ||||| ||||||||||| ||||||||||||   ||||||| |||||| |||||||||||    
T  49944868 tttttagattcattgaataattgatgtatcttgtctagaatatagaccaaatacatcatttatacaatgaatcaaaaaaatcaaatgtttc 49944958  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 589 - 641
Target Start/End: Complemental strand, 15286084 - 15286032
Alignment:
Q  589 aatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||| || ||||||||||||  |||||||||||||||||||||||||||    
T  15286084 aatatagatcaaatacatcatttatataatgaattaaaaaagtcaaatgtttc 15286032  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 555 - 641
Target Start/End: Original strand, 6661549 - 6661639
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||| ||||||| ||    || || || ||||||||||| |||||||||||| | ||| ||| ||||||||||||||||||    
T  6661549 tttttagattcatttagtaattaatgtatcttgtatagaatatagaccaaatacatcatttatgcaattaatcaaaaaagtcaaatgtttc 6661639  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 555 - 640
Target Start/End: Complemental strand, 519946 - 519857
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgttt 640  Q
    |||||||||||||||||||||||||    ||  |||| |||||||| || ||||||||||||   ||| ||| |||||||||||||||||    
T  519946 tttttagattcattgagtaattgatgtatcttatctagaatatagatcaaatacatcatttatacaataaatcaaaaaagtcaaatgttt 519857  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 589 - 641
Target Start/End: Complemental strand, 26760248 - 26760196
Alignment:
Q  589 aatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||||||||| ||||||||||||   ||||||| ||||||||||||||||||    
T  26760248 aatatagaccaaatacatcatttattcaatgaatcaaaaaagtcaaatgtttc 26760196  T

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Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 589 - 641
Target Start/End: Original strand, 26924286 - 26924338
Alignment:
Q  589 aatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||||||||| ||||||||||||   ||||||| ||||||||||||||||||    
T  26924286 aatatagaccaaatacatcatttattcaatgaatcaaaaaagtcaaatgtttc 26924338  T

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Target: chr8 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 556 - 641
Target Start/End: Original strand, 8793755 - 8793844
Alignment:
Q  556 ttttagattcattgagtaattgatct----ggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||||||||||||| |    |||||| ||||||||| | |||||||||||| | ||||||| ||||||||||||| ||||    
T  8793755 ttttagattcattgagtaattgatgtatttggtctataatatagactaaatacatcatttatgcaatgaatcaaaaaagtcaaatatttc 8793844  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 555 - 641
Target Start/End: Original strand, 5031499 - 5031589
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||| ||||||| ||||||||||    || ||||| ||||||||| | |||||||||||| | ||||||| ||||||||||||||||||    
T  5031499 tttttaaattcattaagtaattgatgtatcttgtctagaatatagactaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttc 5031589  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 42123079 - 42122989
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||||||||||||||||||| ||    || ||||| |||||| |||| |||||||||||| | ||||||| |||||||||||| |||||    
T  42123079 tttttagattcattgagtaattaatgtatcttgtctagaatatataccaaatacatcatttatgcaatgaatcaaaaaagtcaaacgtttc 42122989  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 578 - 641
Target Start/End: Complemental strand, 35149754 - 35149691
Alignment:
Q  578 atctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||| ||||| ||||||||||| |||||||||||| | ||| ||| ||||||||||||||||||    
T  35149754 atcttgtctagaatatagaccaaatacatcatttatgcaattaatcaaaaaagtcaaatgtttc 35149691  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 578 - 636
Target Start/End: Original strand, 8803290 - 8803348
Alignment:
Q  578 atctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaat 636  Q
    |||| ||||| ||||||||||| |||||||||||| ||||||||| |||||||| ||||    
T  8803290 atcttgtctagaatatagaccaaatacatcatttatgtaatgaatcaaaaaagttaaat 8803348  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 555 - 612
Target Start/End: Complemental strand, 13964528 - 13964467
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcattta 612  Q
    |||||||||||||||||||| ||||     ||||||| ||||||||||||||||||||||||    
T  13964528 tttttagattcattgagtaaatgatgtacatggtctataatatagaccacatacatcattta 13964467  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 589 - 641
Target Start/End: Complemental strand, 24619033 - 24618981
Alignment:
Q  589 aatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    ||||||||||| |||||||||||| | ||||||| |||||||||||| |||||    
T  24619033 aatatagaccaaatacatcatttatgcaatgaatcaaaaaagtcaaaggtttc 24618981  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 555 - 642
Target Start/End: Complemental strand, 8453707 - 8453617
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttcc 642  Q
    ||||||||| |||||||||||||||    || ||||| ||||||||  | |||||| ||||| ||||||||| |||||| ||||||||||||    
T  8453707 tttttagatacattgagtaattgatatatcttgtctagaatatagataa-atacattatttatgtaatgaatcaaaaaattcaaatgtttcc 8453617  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 555 - 641
Target Start/End: Original strand, 3236365 - 3236455
Alignment:
Q  555 tttttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||||| ||||||||| ||||||||    || || || ||| ||||||| ||||||||||||   ||||||||||||||||||||| ||||    
T  3236365 tttttaaattcattgaataattgatgtatctagtttaaaatttagaccaaatacatcatttatacaatgaattaaaaaagtcaaatatttc 3236455  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 584 - 641
Target Start/End: Complemental strand, 40483363 - 40483306
Alignment:
Q  584 tctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 641  Q
    |||| ||||| ||||| |||||||||||| | |||||||||||||||| |||| ||||    
T  40483363 tctagaatatggaccaaatacatcatttatgcaatgaattaaaaaagttaaatatttc 40483306  T

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Target: scaffold0236 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 557 - 638
Target Start/End: Complemental strand, 16762 - 16677
Alignment:
Q  557 tttagattcattgagtaattgat----ctggtctacaatatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgt 638  Q
    |||| ||||||||||||||||||    || ||||| ||||||||||| ||||||  |||| | ||||||| |||||||||||||||    
T  16762 tttaaattcattgagtaattgatgtatcttgtctagaatatagaccaaatacatattttatgcaatgaatcaaaaaagtcaaatgt 16677  T

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