View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16165_low_11 (Length: 394)

Name: NF16165_low_11
Description: NF16165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16165_low_11
NF16165_low_11
[»] chr4 (37 HSPs)
chr4 (40-391)||(50250605-50250957)
chr4 (248-394)||(37827017-37827164)
chr4 (239-394)||(50668957-50669113)
chr4 (255-386)||(49044226-49044358)
chr4 (239-393)||(7877632-7877787)
chr4 (40-112)||(50669237-50669309)
chr4 (331-394)||(48891317-48891380)
chr4 (256-305)||(49048613-49048662)
chr4 (324-394)||(7237820-7237890)
chr4 (239-297)||(7908325-7908383)
chr4 (251-300)||(45384903-45384952)
chr4 (251-300)||(48735417-48735466)
chr4 (61-102)||(48852849-48852890)
chr4 (244-300)||(48147745-48147801)
chr4 (61-105)||(48903120-48903164)
chr4 (256-299)||(7237763-7237806)
chr4 (256-299)||(7771396-7771439)
chr4 (256-299)||(7790081-7790124)
chr4 (266-305)||(7813469-7813508)
chr4 (266-305)||(7822958-7822997)
chr4 (61-112)||(48705237-48705288)
chr4 (344-391)||(48870450-48870497)
chr4 (336-391)||(48875754-48875809)
chr4 (344-391)||(48886136-48886183)
chr4 (74-112)||(7773696-7773734)
chr4 (42-96)||(49040984-49041038)
chr4 (75-112)||(7771553-7771590)
chr4 (75-112)||(7790238-7790275)
chr4 (330-391)||(48705465-48705526)
chr4 (341-386)||(48852576-48852621)
chr4 (244-305)||(48852658-48852719)
chr4 (72-105)||(48898893-48898926)
chr4 (251-300)||(48902929-48902978)
chr4 (72-105)||(49044055-49044088)
chr4 (251-299)||(48705394-48705442)
chr4 (40-96)||(48863421-48863477)
chr4 (341-389)||(49048701-49048749)
[»] chr7 (2 HSPs)
chr7 (244-394)||(48883703-48883854)
chr7 (61-112)||(48883984-48884036)
[»] chr8 (5 HSPs)
chr8 (255-392)||(12200211-12200349)
chr8 (255-392)||(12444639-12444777)
chr8 (67-104)||(12195484-12195521)
chr8 (67-104)||(12439912-12439949)
chr8 (72-106)||(15349038-15349072)
[»] chr3 (5 HSPs)
chr3 (328-394)||(47452011-47452077)
chr3 (244-304)||(11005981-11006041)
chr3 (346-394)||(11006078-11006126)
chr3 (346-394)||(11015641-11015689)
chr3 (244-304)||(11024556-11024616)
[»] chr6 (6 HSPs)
chr6 (341-394)||(21015711-21015764)
chr6 (257-305)||(21015801-21015849)
chr6 (40-112)||(21979465-21979537)
chr6 (60-102)||(21015992-21016034)
chr6 (256-305)||(21979678-21979727)
chr6 (325-391)||(21979751-21979817)
[»] chr5 (3 HSPs)
chr5 (251-302)||(42562375-42562426)
chr5 (244-300)||(29696203-29696259)
chr5 (332-391)||(42562439-42562498)
[»] chr1 (4 HSPs)
chr1 (244-300)||(24367144-24367200)
chr1 (244-300)||(24369477-24369533)
chr1 (40-105)||(24367327-24367392)
chr1 (244-300)||(24310168-24310224)


Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 40 - 391
Target Start/End: Original strand, 50250605 - 50250957
Alignment:
Q  40 ggcaacaataacatagaccaataaatcataaggaaaagccaaccaatgaatagccccattaaagagaacccctcgcttgctacgaggatccaaagtggaa 139  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50250605 ggcaacaataacatagaccaataaatcataacgaaaagccaaccaatgaatagccccattaaagagaacccctcgcttgctacgaggatccaaagtggaa 50250704  T
Q  140 ttcatataagctaagtgtgtaccctcaatttcaatttgtttccagatattatttctcaatgnnnnnnnctccaaatgtgatgaatcattataatcataag 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  50250705 ttcatataagctaagtgtgtaccctcaatttcaatttgtttccagatattatttctcaatgaaaaaaactccaaatgtgatgaatcattataatcataag 50250804  T
Q  240 gatgataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgata-ttctttaatttggaatcaaa 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  50250805 gatgataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaaa 50250904  T
Q  339 atgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtaga 391  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  50250905 atgagacaaaggtatttgtatgtgaagcccggtggatggattccataggtaga 50250957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 248 - 394
Target Start/End: Original strand, 37827017 - 37827164
Alignment:
Q  248 gatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatattctt-taatttggaatcaaaatgagaca 346  Q
    ||||||||||| ||||| ||||||||| | || ||||||||||||||||||||||||  |  | ||| ||||||||  || ||||| | |||| ||||||    
T  37827017 gatattgaaacaaccaagtaatcatctctagactggtcataaccaaaaccatatagagaaccgaaataatattcttccaaattggagttaaaaggagaca 37827116  T
Q  347 aaggtatttgtatgtgaagcccagtggatggattccataggtagatgt 394  Q
    | ||||||||| ||||||  ||||||||||||||||||| ||||||||    
T  37827117 agggtatttgtttgtgaaatccagtggatggattccatatgtagatgt 37827164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 239 - 394
Target Start/End: Complemental strand, 50669113 - 50668957
Alignment:
Q  239 ggatgataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatatt-ctttaatttggaatcaa 337  Q
    |||| |||||| | |||||| ||||| ||||||||| ||||  |||||||||||||||||||||||||||   ||||||||| ||||| ||||| |||||    
T  50669113 ggatcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatcaaaatgatattcctttagtttggtatcaa 50669014  T
Q  338 aatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtagatgt 394  Q
    || ||||||| ||||| ||| | ||||  |  |||||||||||||||| | ||||||    
T  50669013 aaggagacaatggtatctgtttatgaaatctggtggatggattccatatgcagatgt 50668957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 386
Target Start/End: Original strand, 49044226 - 49044358
Alignment:
Q  255 aaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatattctt-taatttggaatcaaaatgagacaaaggtat 353  Q
    |||||||||||||||||||||||||  | ||||| ||||||| |||||||||   ||||||||   ||| ||| | |||| || || |||||||||||||    
T  49044226 aaaccaccaaataatcatctgttgacggatcatacccaaaacaatatagatgtaaggaatgattgacttgtaaataggaaccataaggagacaaaggtat 49044325  T
Q  354 ttgtatgtgaagcccagtggatggattccatag 386  Q
    |||| ||||||  | ||||||||||||||||||    
T  49044326 ttgtttgtgaactctagtggatggattccatag 49044358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 239 - 393
Target Start/End: Complemental strand, 7877787 - 7877632
Alignment:
Q  239 ggatgataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatattct-ttaatttggaatcaa 337  Q
    |||| |||||| | |||||||||||| ||||||||| |||| ||||||||||||||||||| || || | ||  |  |||| ||  ||||||||||  ||    
T  7877787 ggattataggacaatgaaaccaccaagtaatcatctcttgattggtcataaccaaaaccatgtatatcaatgcgacaatatgctgctaatttggaacgaa 7877688  T
Q  338 aatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtagatg 393  Q
    || |||||| |||||||||| | | ||  ||||||||||||||||||| |||||||    
T  7877687 aaggagacacaggtatttgttttttaaatccagtggatggattccatatgtagatg 7877632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 50669309 - 50669237
Alignment:
Q  40 ggcaacaataacatagaccaataaatcataaggaaaagccaaccaatgaatagccccattaaagagaacccct 112  Q
    ||||||||| ||| | |||  |||||||||| ||||||||||||||| ||||||| |||||||||||||||||    
T  50669309 ggcaacaatgacaaacacctttaaatcataacgaaaagccaaccaataaatagcctcattaaagagaacccct 50669237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 331 - 394
Target Start/End: Complemental strand, 48891380 - 48891317
Alignment:
Q  331 gaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtagatgt 394  Q
    ||||||| | ||||||||||||||||| ||||||| |||||||||||||||||||  |||||||    
T  48891380 gaatcaataggagacaaaggtatttgtttgtgaagtccagtggatggattccatacatagatgt 48891317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 49048613 - 49048662
Alignment:
Q  256 aaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagat 305  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  49048613 aaccaccaaataatcatctgttgatgggtcatacccaaaaccatatagat 49048662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 324 - 394
Target Start/End: Original strand, 7237820 - 7237890
Alignment:
Q  324 taatttggaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtagatgt 394  Q
    |||||||||||||||| ||||||  ||||||||| | | ||  ||||||||||||||||||| ||||||||    
T  7237820 taatttggaatcaaaaggagacacgggtatttgttttttaaatccagtggatggattccatacgtagatgt 7237890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 297
Target Start/End: Complemental strand, 7908383 - 7908325
Alignment:
Q  239 ggatgataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaacc 297  Q
    |||| |||||| | |||||||||||| ||||||||| |||| |||||||||||||||||    
T  7908383 ggattataggacaatgaaaccaccaagtaatcatctcttgactggtcataaccaaaacc 7908325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 45384903 - 45384952
Alignment:
Q  251 attgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 300  Q
    |||||||||||||||||||||| |||||| || ||||| |||||||||||    
T  45384903 attgaaaccaccaaataatcatttgttgactgatcatacccaaaaccata 45384952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 48735417 - 48735466
Alignment:
Q  251 attgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 300  Q
    |||||||||||||| |||||||||||| | |||||||| |||||||||||    
T  48735417 attgaaaccaccaagtaatcatctgttaaatggtcatacccaaaaccata 48735466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 48852890 - 48852849
Alignment:
Q  61 taaatcataaggaaaagccaaccaatgaatagccccattaaa 102  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  48852890 taaatcatgacgaaaagccaaccaatgaatagccccattaaa 48852849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 48147745 - 48147801
Alignment:
Q  244 ataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 300  Q
    |||||| | |||||||||||| |||||||||||| | |||||||| |||||||||||    
T  48147745 ataggagaatgaaaccaccaagtaatcatctgttaactggtcatacccaaaaccata 48147801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 48903164 - 48903120
Alignment:
Q  61 taaatcataaggaaaagccaaccaatgaatagccccattaaagag 105  Q
    |||||||| | ||||||||||| ||||||||||||||||||||||    
T  48903164 taaatcatgatgaaaagccaactaatgaatagccccattaaagag 48903120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 299
Target Start/End: Original strand, 7237763 - 7237806
Alignment:
Q  256 aaccaccaaataatcatctgttgagtggtcataaccaaaaccat 299  Q
    ||||||||| ||||||||| |||| |||||||||||||||||||    
T  7237763 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7237806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 299
Target Start/End: Complemental strand, 7771439 - 7771396
Alignment:
Q  256 aaccaccaaataatcatctgttgagtggtcataaccaaaaccat 299  Q
    ||||||||| ||||||||| |||| |||||||||||||||||||    
T  7771439 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7771396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 299
Target Start/End: Complemental strand, 7790124 - 7790081
Alignment:
Q  256 aaccaccaaataatcatctgttgagtggtcataaccaaaaccat 299  Q
    ||||||||| ||||||||| |||| |||||||||||||||||||    
T  7790124 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7790081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 305
Target Start/End: Complemental strand, 7813508 - 7813469
Alignment:
Q  266 taatcatctgttgagtggtcataaccaaaaccatatagat 305  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  7813508 taatcatctcttgactggtcataaccaaaaccatatagat 7813469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 305
Target Start/End: Complemental strand, 7822997 - 7822958
Alignment:
Q  266 taatcatctgttgagtggtcataaccaaaaccatatagat 305  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  7822997 taatcatctcttgactggtcataaccaaaaccatatagat 7822958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 48705237 - 48705288
Alignment:
Q  61 taaatcataaggaaaagccaaccaatgaatagccccattaaagagaacccct 112  Q
    |||||||| | || |||||||||||||||||||||||||| |||| ||||||    
T  48705237 taaatcatgacgataagccaaccaatgaatagccccattatagagcacccct 48705288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 391
Target Start/End: Complemental strand, 48870497 - 48870450
Alignment:
Q  344 acaaaggtatttgtatgtgaagcccagtggatggattccataggtaga 391  Q
    |||||||||||||| ||||||  || ||||||||||||||||||||||    
T  48870497 acaaaggtatttgtttgtgaaatccggtggatggattccataggtaga 48870450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 336 - 391
Target Start/End: Complemental strand, 48875809 - 48875754
Alignment:
Q  336 aaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtaga 391  Q
    |||| |||||| |||||||||| ||||||  || ||||||||||||||||||||||    
T  48875809 aaaaggagacataggtatttgtttgtgaaatccggtggatggattccataggtaga 48875754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 391
Target Start/End: Complemental strand, 48886183 - 48886136
Alignment:
Q  344 acaaaggtatttgtatgtgaagcccagtggatggattccataggtaga 391  Q
    |||||||||||||| ||||||  || ||||||||||||||||||||||    
T  48886183 acaaaggtatttgtttgtgaaatccggtggatggattccataggtaga 48886136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 7773696 - 7773734
Alignment:
Q  74 aaagccaaccaatgaatagccccattaaagagaacccct 112  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  7773696 aaagccaaccaatgaatagccccattaaatagaaaccct 7773734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 49040984 - 49041038
Alignment:
Q  42 caacaataacatagaccaataaatcataaggaaaagccaaccaatgaatagcccc 96  Q
    ||||||||||||| ||  ||| ||||| | |||||||||||||||||||||||||    
T  49040984 caacaataacataaacacatatatcatgacgaaaagccaaccaatgaatagcccc 49041038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 7771590 - 7771553
Alignment:
Q  75 aagccaaccaatgaatagccccattaaagagaacccct 112  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  7771590 aagccaaccaatgaatagccccattaaatagaaaccct 7771553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 7790275 - 7790238
Alignment:
Q  75 aagccaaccaatgaatagccccattaaagagaacccct 112  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  7790275 aagccaaccaatgaatagccccattaaatagaaaccct 7790238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 391
Target Start/End: Original strand, 48705465 - 48705526
Alignment:
Q  330 ggaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtaga 391  Q
    |||| ||||| | ||||||||||||||| ||||||  ||||| ||||||||||| |||||||    
T  48705465 ggaaccaaaaggtgacaaaggtatttgtttgtgaaatccagtagatggattccacaggtaga 48705526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 386
Target Start/End: Complemental strand, 48852621 - 48852576
Alignment:
Q  341 gagacaaaggtatttgtatgtgaagcccagtggatggattccatag 386  Q
    ||||||||||||||||| ||||||  || |||||||||||||||||    
T  48852621 gagacaaaggtatttgtttgtgaactccggtggatggattccatag 48852576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 48852719 - 48852658
Alignment:
Q  244 ataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagat 305  Q
    |||||| ||| |||| ||||| |||||||| |||||  ||||||| ||||||||||||||||    
T  48852719 ataggacattaaaactaccaagtaatcatcggttgacgggtcatacccaaaaccatatagat 48852658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 48898926 - 48898893
Alignment:
Q  72 gaaaagccaaccaatgaatagccccattaaagag 105  Q
    ||||||||||||||||||||||||||||| ||||    
T  48898926 gaaaagccaaccaatgaatagccccattatagag 48898893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 300
Target Start/End: Complemental strand, 48902978 - 48902929
Alignment:
Q  251 attgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 300  Q
    ||||| |||| ||| ||||||||| ||||||||||||| |||||||||||    
T  48902978 attgataccatcaagtaatcatctcttgagtggtcatacccaaaaccata 48902929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 49044055 - 49044088
Alignment:
Q  72 gaaaagccaaccaatgaatagccccattaaagag 105  Q
    ||||||||||||| ||||||||||||||||||||    
T  49044055 gaaaagccaaccagtgaatagccccattaaagag 49044088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 48705394 - 48705442
Alignment:
Q  251 attgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccat 299  Q
    |||||||| ||||| |||||||||||||| || ||||| ||||||||||    
T  48705394 attgaaacaaccaagtaatcatctgttgactgatcatatccaaaaccat 48705442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 48863477 - 48863421
Alignment:
Q  40 ggcaacaataacatagaccaataaatcataaggaaaagccaaccaatgaatagcccc 96  Q
    ||||||||||||||| ||   || ||||| | |||||||||||||||||||||||||    
T  48863477 ggcaacaataacataaacacctatatcatgacgaaaagccaaccaatgaatagcccc 48863421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 49048701 - 49048749
Alignment:
Q  341 gagacaaaggtatttgtatgtgaagcccagtggatggattccataggta 389  Q
    ||||||||||||||||| ||||||  | ||||||||||||||| |||||    
T  49048701 gagacaaaggtatttgtctgtgaactctagtggatggattccaaaggta 49048749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 244 - 394
Target Start/End: Complemental strand, 48883854 - 48883703
Alignment:
Q  244 ataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatattctt-taatttggaatcaaaatga 342  Q
    |||||| |||||||||||||  ||||||||| ||||  ||||||||||||||||||||||||||| | ||| || | ||| | |  |||||| |||| ||    
T  48883854 ataggacattgaaaccaccatgtaatcatctcttgacgggtcataaccaaaaccatatagatgatcgaaataatgtacttctgaaatggaataaaaagga 48883755  T
Q  343 gacaaaggtatttgtatgtgaagcccagtggatggattccataggtagatgt 394  Q
    ||||||||||||||| ||||||  |||||| |||||||||||| | ||||||    
T  48883754 gacaaaggtatttgtttgtgaaatccagtgtatggattccatatgcagatgt 48883703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 48884036 - 48883984
Alignment:
Q  61 taaatcataaggaaaag-ccaaccaatgaatagccccattaaagagaacccct 112  Q
    |||||||||| |||||  |||||||||||||||||||||||||| ||| ||||    
T  48884036 taaatcataacgaaaaaaccaaccaatgaatagccccattaaagggaaaccct 48883984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 392
Target Start/End: Complemental strand, 12200349 - 12200211
Alignment:
Q  255 aaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatattc-tttaatttggaatcaaaatgagacaaaggtat 353  Q
    |||||||||| ||||||||| ||||  |||||||||||||||||||||||||||    ||| ||| | | ||| ||  |||||||| |||||||||||||    
T  12200349 aaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatgtcgatggtatgcatgtaacttcaaatcaaaaggagacaaaggtat 12200250  T
Q  354 ttgtatgtgaagcccagtggatggattccataggtagat 392  Q
    || | |||||| || || |||||||||||||| ||||||    
T  12200249 ttttttgtgaaacctagaggatggattccatacgtagat 12200211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 392
Target Start/End: Complemental strand, 12444777 - 12444639
Alignment:
Q  255 aaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatattc-tttaatttggaatcaaaatgagacaaaggtat 353  Q
    |||||||||| ||||||||| ||||  |||||||||||||||||||||||||||    ||| ||| | | ||| ||  |||||||| |||||||||||||    
T  12444777 aaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatgtcgatggtatgcatgtaacttcaaatcaaaaggagacaaaggtat 12444678  T
Q  354 ttgtatgtgaagcccagtggatggattccataggtagat 392  Q
    || | |||||| || || |||||||||||||| ||||||    
T  12444677 ttttttgtgaaacctagaggatggattccatacgtagat 12444639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 12195521 - 12195484
Alignment:
Q  67 ataaggaaaagccaaccaatgaatagccccattaaaga 104  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  12195521 ataaggagaagccaaccaatgaatagccccattaaaga 12195484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 12439949 - 12439912
Alignment:
Q  67 ataaggaaaagccaaccaatgaatagccccattaaaga 104  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  12439949 ataaggagaagccaaccaatgaatagccccattaaaga 12439912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 106
Target Start/End: Complemental strand, 15349072 - 15349038
Alignment:
Q  72 gaaaagccaaccaatgaatagccccattaaagaga 106  Q
    ||||||||||||||||||||||||||||| |||||    
T  15349072 gaaaagccaaccaatgaatagccccattatagaga 15349038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 328 - 394
Target Start/End: Original strand, 47452011 - 47452077
Alignment:
Q  328 ttggaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtagatgt 394  Q
    |||||| ||||| ||| ||||||||||||| ||||||  ||||||||||||||||||| ||||||||    
T  47452011 ttggaaccaaaaggaggcaaaggtatttgtttgtgaactccagtggatggattccatatgtagatgt 47452077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 11005981 - 11006041
Alignment:
Q  244 ataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccatataga 304  Q
    |||||| | ||| |||||||| ||||||||| |||| |||||||| |||||||||||||||    
T  11005981 ataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 11006041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 394
Target Start/End: Original strand, 11006078 - 11006126
Alignment:
Q  346 aaaggtatttgtatgtgaagcccagtggatggattccataggtagatgt 394  Q
    |||||||||||| || || | ||||||||||||||||||||||||||||    
T  11006078 aaaggtatttgtctgagacgtccagtggatggattccataggtagatgt 11006126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 394
Target Start/End: Original strand, 11015641 - 11015689
Alignment:
Q  346 aaaggtatttgtatgtgaagcccagtggatggattccataggtagatgt 394  Q
    |||||||||||| ||||| | ||||| ||||||||||||||||||||||    
T  11015641 aaaggtatttgtttgtgatgtccagttgatggattccataggtagatgt 11015689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 11024556 - 11024616
Alignment:
Q  244 ataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccatataga 304  Q
    |||||| | ||| |||||||| ||||||||| |||| |||||||| |||||||||||||||    
T  11024556 ataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 11024616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 341 - 394
Target Start/End: Complemental strand, 21015764 - 21015711
Alignment:
Q  341 gagacaaaggtatttgtatgtgaagcccagtggatggattccataggtagatgt 394  Q
    ||||||||||||||||| ||||||  | ||||||||||||||||||||||||||    
T  21015764 gagacaaaggtatttgtttgtgaactctagtggatggattccataggtagatgt 21015711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 21015849 - 21015801
Alignment:
Q  257 accaccaaataatcatctgttgagtggtcataaccaaaaccatatagat 305  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  21015849 accaccaaataatcatctgttgatgggtcatacccaaaaccatatagat 21015801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 21979465 - 21979537
Alignment:
Q  40 ggcaacaataacatagaccaataaatcataaggaaaagccaaccaatgaatagccccattaaagagaacccct 112  Q
    ||||||||||||| | ||  ||||||||||  |||||| ||||||||||||||||| |||||||| |||||||    
T  21979465 ggcaacaataacaaacacagataaatcataccgaaaagtcaaccaatgaatagccctattaaagaaaacccct 21979537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 21016034 - 21015992
Alignment:
Q  60 ataaatcataaggaaaagccaaccaatgaatagccccattaaa 102  Q
    ||||||||| | |||||||||||||||||||||||||||||||    
T  21016034 ataaatcatgacgaaaagccaaccaatgaatagccccattaaa 21015992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 21979678 - 21979727
Alignment:
Q  256 aaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagat 305  Q
    ||||||||| ||||||| | |||| |||||||||||||||||||||||||    
T  21979678 aaccaccaagtaatcatttcttgactggtcataaccaaaaccatatagat 21979727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 391
Target Start/End: Original strand, 21979751 - 21979817
Alignment:
Q  325 aatttggaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtaga 391  Q
    ||||||||||||| | ||||||||||||||||| | ||||| ||||| || || ||||||| |||||    
T  21979751 aatttggaatcaagaggagacaaaggtatttgtttttgaagtccagtagacgggttccatatgtaga 21979817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 302
Target Start/End: Original strand, 42562375 - 42562426
Alignment:
Q  251 attgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccatata 302  Q
    ||||||||||| |||||||||| ||||||||| ||||| |||||||||||||    
T  42562375 attgaaaccactaaataatcatttgttgagtgatcatacccaaaaccatata 42562426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 29696259 - 29696203
Alignment:
Q  244 ataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 300  Q
    |||||| ||||||| |||||| |||||||||||||| | |||||| |||||||||||    
T  29696259 ataggacattgaaatcaccaagtaatcatctgttgactcgtcatacccaaaaccata 29696203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 391
Target Start/End: Original strand, 42562439 - 42562498
Alignment:
Q  332 aatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtaga 391  Q
    |||||| | ||||||||||||||||| ||||| | ||  |||||||||||||||||||||    
T  42562439 aatcaataggagacaaaggtatttgtttgtgatgtccgatggatggattccataggtaga 42562498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 24367200 - 24367144
Alignment:
Q  244 ataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 300  Q
    ||||||||  ||||||||||| |||||||||||||| | |||||| |||||||||||    
T  24367200 ataggataacgaaaccaccaagtaatcatctgttgacttgtcatacccaaaaccata 24367144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 24369533 - 24369477
Alignment:
Q  244 ataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 300  Q
    |||||||| |||||||||||  |||||||||||||| | |||||| |||||||||||    
T  24369533 ataggatactgaaaccaccaggtaatcatctgttgactcgtcatagccaaaaccata 24369477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 24367392 - 24367327
Alignment:
Q  40 ggcaacaataacatagaccaataaatcataaggaaaagccaaccaatgaatagccccattaaagag 105  Q
    |||||||||||||| |||   || ||||||| |||||| |||||| ||||||||||||| ||||||    
T  24367392 ggcaacaataacattgacacgtatatcataacgaaaagtcaaccagtgaatagccccatgaaagag 24367327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 24310224 - 24310168
Alignment:
Q  244 ataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 300  Q
    |||||||| | |||| ||||| ||||||||| |||| | ||||||||||||||||||    
T  24310224 ataggatactaaaactaccaagtaatcatctcttgactcgtcataaccaaaaccata 24310168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University