View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16165_low_14 (Length: 362)
Name: NF16165_low_14
Description: NF16165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16165_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 15 - 343
Target Start/End: Original strand, 8342523 - 8342866
Alignment:
| Q |
15 |
taattctatagtgtttcattatagcttttatgattggtgtcaaaacctattcttatgtgcgggtattgacgaatccatgctttttgttgttgaacttttg |
114 |
Q |
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| T |
8342523 |
taattctatagtgtttgattatagctttcatgattggtgtcaaaacccattcttatgtgcgggtattgacgaatccatgctttttgttgttgaatttttg |
8342622 |
T |
|
| Q |
115 |
ttatatattttgactttcttttctgatacaccttgtgccggaaggataatctaccaagtaatatatctcattctgatttcttttttaaaaaatgaaaatt |
214 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||| |
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| T |
8342623 |
ttatatattttaactttcttttctgatacaccttgtgccggaaggataatctaccaagtaatatatctcattctgatct-gtttttaaaaaataaaaatt |
8342721 |
T |
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| Q |
215 |
ccctttactattgcattttcatattaccatgtccaccaacacctttgagtcgccatcaacttggattaaga----------------ctctttaattata |
298 |
Q |
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| T |
8342722 |
ccctttactattgcattttcatattaccatgtccaccaacacctttgagtcgccatcaacttggattaagactctttaatcagagttctctttaattata |
8342821 |
T |
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| Q |
299 |
taataactataatttatccacttccatcgtcattatcgtcgcaat |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8342822 |
taataactataatttatccacttccatcgtcattatcgtcgcaat |
8342866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 20282785 - 20282840
Alignment:
| Q |
23 |
tagtgtttcattatagcttttatgattggtgtcaaaacctattcttatgtgcgggt |
78 |
Q |
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| T |
20282785 |
tagtttttcattatagctttcataattggtggcaaaacctattcatatgtgcgggt |
20282840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 20796785 - 20796646
Alignment:
| Q |
23 |
tagtgtttcattatagcttttatgattggtgtcaaaacctattcttatgtgcgggtattgacgaatccatgctttttgttgttgaacttttgttatatat |
122 |
Q |
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|||| ||||||||||||||||| ||||||| |||||| |||||||||||||||||||| | ||| |||| | ||| |||||| | |||| || || |
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| T |
20796785 |
tagtctttcattatagcttttagaattggtgccaaaactcattcttatgtgcgggtattggctaattagtgctatatgtcgttgaaatactgttgtaaat |
20796686 |
T |
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| Q |
123 |
tttgactttcttttctgatacaccttgtgccggaaggata |
162 |
Q |
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|||| ||||||| | || |||||||| |||||| |||||| |
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| T |
20796685 |
tttggctttcttctttgttacaccttatgccgggaggata |
20796646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 9547756 - 9547616
Alignment:
| Q |
23 |
tagtgtttcattatagcttttatgattggtgtcaaaacctattctt-atgtgcgggtattgacgaatccatgctttttgttgttgaacttttgttatata |
121 |
Q |
| |
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||||||||||||| |||||| || ||| ||| |||||||| || || |||||||||||||| | ||| ||||| || |||||||| |||| ||| | |
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| T |
9547756 |
tagtgtttcattaaagctttcataatttgtgccaaaaccttttttttatgtgcgggtattggctaatttgtgcttctttttgttgaatgtttgccataaa |
9547657 |
T |
|
| Q |
122 |
ttttgactttcttttctgatacaccttgtgccggaaggata |
162 |
Q |
| |
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||||| ||||||| |||| | ||||||||||||||| |||| |
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| T |
9547656 |
ttttggctttcttctctggttcaccttgtgccggaaagata |
9547616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 32991988 - 32992037
Alignment:
| Q |
35 |
atagcttttatgattggtgtcaaaacctattcttatgtgcgggtattgac |
84 |
Q |
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||||||||||| ||||||| |||||| |||||||||||||||||||||| |
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| T |
32991988 |
atagcttttataattggtgccaaaactcattcttatgtgcgggtattgac |
32992037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 16316272 - 16316324
Alignment:
| Q |
32 |
attatagcttttatgattggtgtcaaaacctattcttatgtgcgggtattgac |
84 |
Q |
| |
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||||||||||| || ||||||||||||||| ||||||||||| || ||||||| |
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| T |
16316272 |
attatagctttcataattggtgtcaaaacccattcttatgtgtggctattgac |
16316324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 24997204 - 24997154
Alignment:
| Q |
32 |
attatagcttttatgattggtgtcaaaacctattcttatgtgcgggtattg |
82 |
Q |
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||||||| ||| |||||||||| ||||||| |||||||||||||||||||| |
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| T |
24997204 |
attatagttttcatgattggtgccaaaacccattcttatgtgcgggtattg |
24997154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 10162195 - 10162241
Alignment:
| Q |
28 |
tttcattatagcttttatgattggtgtcaaaacctattcttatgtgc |
74 |
Q |
| |
|
||||||||||||||| || |||||||||||||| |||||||||||| |
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| T |
10162195 |
tttcattatagctttcataattggtgtcaaaactcattcttatgtgc |
10162241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 17986604 - 17986724
Alignment:
| Q |
31 |
cattatagcttttatgattggtgtcaaaacctattcttatgtgcgggtattgacgaatccatgctttttgttgttgaacttttgttatatattttgactt |
130 |
Q |
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| T |
17986604 |
cattatagctttcataattggtgccaaaactcattcttacgtgcctgtatttgataattcatggtttttgctgttgaactactgttgtaaattttgactt |
17986703 |
T |
|
| Q |
131 |
tcttttctgatacaccttgtg |
151 |
Q |
| |
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| || ||| ||||| |||||| |
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| T |
17986704 |
tattctctaatacatcttgtg |
17986724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 20757236 - 20757188
Alignment:
| Q |
102 |
tgttgaacttttgttatatattttgactttcttttctgatacaccttgt |
150 |
Q |
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|||||||| ||||| ||||||||||||||||||| ||||||| ||||| |
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| T |
20757236 |
tgttgaacacttgttgtatattttgactttcttttttgatacatcttgt |
20757188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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