View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16165_low_15 (Length: 359)
Name: NF16165_low_15
Description: NF16165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16165_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 355
Target Start/End: Original strand, 53819960 - 53820297
Alignment:
| Q |
16 |
catgtatatgatatgataactaccaatctaccatgagtaaaaaaattgataaaaagaatattgttatatatttttaatcaacnnnnnnnnnnnnnngaac |
115 |
Q |
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| T |
53819960 |
catgtatatgatatgttaactaccaatctaccatgagtaaaaaaattgataaaaagaatattgttatatatttttaatcaacaaaaaaaaaaaa--gaac |
53820057 |
T |
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| Q |
116 |
aaaactatctactgcgacaaggtaagagtattgagcagtagaaaacgtgaattgatcaaagccctgaaaactttgtcactaacactttcaataccacaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53820058 |
aaaactatctactgcgacaaggtaagagtattgagcagtagaaaacgtgaattgatcaaagccctgaaaactttgtcactaacactttcaataccacaaa |
53820157 |
T |
|
| Q |
216 |
tattttcctctaaatcacgcattctcttcaaaaccgatctcacttcttcatctcctttctttttcaaattcccaatattttcaacctcattcaaaacctt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53820158 |
tattttcctctaaatcacgcattctcttcaaaaccgatctcacttcttcatctcctttctttttcaaattcccaatattttcaacctcattcaaaacctt |
53820257 |
T |
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| Q |
316 |
ctgaatttcttcaatcccttccaactccttcatctcactc |
355 |
Q |
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||||||||||||||||||||| ||||||||| || ||||| |
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| T |
53820258 |
ctgaatttcttcaatcccttctaactccttcttcacactc |
53820297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 195 - 297
Target Start/End: Complemental strand, 32337290 - 32337189
Alignment:
| Q |
195 |
taacactttcaataccacaaatattttcctctaaatcacgcattctcttcaaaaccgatctcacttcttcatctcctttctttttcaaattcccaatatt |
294 |
Q |
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||||||||| |||||| || ||| ||| | | |||| ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32337290 |
taacacttttaataccgcacatacattcttgtgaatctcgcatcctcttcaaaacc-atctcacttcttcatcttctttctttttcaaattcccaatatt |
32337192 |
T |
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| Q |
295 |
ttc |
297 |
Q |
| |
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||| |
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| T |
32337191 |
ttc |
32337189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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