View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16165_low_21 (Length: 269)
Name: NF16165_low_21
Description: NF16165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16165_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 78 - 241
Target Start/End: Original strand, 14173919 - 14174082
Alignment:
| Q |
78 |
ctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta |
177 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14173919 |
ctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta |
14174018 |
T |
|
| Q |
178 |
ggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
241 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174019 |
ggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
14174082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 78 - 241
Target Start/End: Original strand, 14178673 - 14178836
Alignment:
| Q |
78 |
ctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta |
177 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178673 |
ctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta |
14178772 |
T |
|
| Q |
178 |
ggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
241 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178773 |
ggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
14178836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 78 - 241
Target Start/End: Complemental strand, 28607189 - 28607026
Alignment:
| Q |
78 |
ctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta |
177 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607189 |
ctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta |
28607090 |
T |
|
| Q |
178 |
ggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
241 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607089 |
ggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
28607026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 78 - 241
Target Start/End: Complemental strand, 28611951 - 28611788
Alignment:
| Q |
78 |
ctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta |
177 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611951 |
ctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta |
28611852 |
T |
|
| Q |
178 |
ggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
241 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611851 |
ggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
28611788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 81 - 241
Target Start/End: Original strand, 44161571 - 44161731
Alignment:
| Q |
81 |
tgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggt |
180 |
Q |
| |
|
|||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44161571 |
tgtgtgtagaggtgtgtgagaggaataatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggt |
44161670 |
T |
|
| Q |
181 |
gctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
241 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44161671 |
gctataaaataatagcattagaatagaagtaggtcttacgggaaacactatattgtatctc |
44161731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 83 - 241
Target Start/End: Original strand, 11104456 - 11104614
Alignment:
| Q |
83 |
tgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgc |
182 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11104456 |
tgtgtagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtgtaggaaaaatacaccgggtggatatcatctctataacttctaggtgt |
11104555 |
T |
|
| Q |
183 |
tataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
241 |
Q |
| |
|
||||| ||||||||||| |||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
11104556 |
tataaaataatagcatttgaataggagtgggtctcacgggaaacactatattgtatctc |
11104614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 48827000 - 48826917
Alignment:
| Q |
158 |
tatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
48827000 |
tatcatctctataacttctaggtgctataaaataatagcattcaaataggagtgaatctcacgggaaacactatattgtatctc |
48826917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 78 - 241
Target Start/End: Original strand, 12930658 - 12930821
Alignment:
| Q |
78 |
ctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta |
177 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930658 |
ctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta |
12930757 |
T |
|
| Q |
178 |
ggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
241 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930758 |
ggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgtatctc |
12930821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 78 - 241
Target Start/End: Original strand, 12935404 - 12935567
Alignment:
| Q |
78 |
ctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta |
177 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935404 |
ctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta |
12935503 |
T |
|
| Q |
178 |
ggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
241 |
Q |
| |
|
|||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935504 |
ggtgctataaaataatagcattagagtaaaagtaggtctcacgggaaacactatattgtatctc |
12935567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 78 - 241
Target Start/End: Original strand, 34907121 - 34907284
Alignment:
| Q |
78 |
ctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta |
177 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907121 |
ctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta |
34907220 |
T |
|
| Q |
178 |
ggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
241 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907221 |
ggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgtatctc |
34907284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 78 - 241
Target Start/End: Complemental strand, 37040809 - 37040646
Alignment:
| Q |
78 |
ctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta |
177 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37040809 |
ctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacatcgggtgggtatcatctctataacttcta |
37040710 |
T |
|
| Q |
178 |
ggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
241 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37040709 |
ggtgctataaaataatagcattagaatagaagtaggtctcacggaaaacactatattgtatctc |
37040646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 81 - 241
Target Start/End: Original strand, 15290223 - 15290373
Alignment:
| Q |
81 |
tgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggt |
180 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15290223 |
tgtgtgtagaagtgtgtgagaa------tagagtgttgactaaatccagaaagtgtgg-aaaaatacaccgggtgggtatcatctctataacttctaggt |
15290315 |
T |
|
| Q |
181 |
gctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
241 |
Q |
| |
|
|| | | ||||||||||| |||||| ||| |||||||| ||||||||||||||||||||| |
|
|
| T |
15290316 |
gc--tgaaataatagcattcgaataggagtgggtctcac-ggaaacactatattgtatctc |
15290373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 241
Target Start/End: Original strand, 12082002 - 12082159
Alignment:
| Q |
83 |
tgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgc |
182 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||| ||||||||||| | | |||||||||| | ||||| ||||| |||||||||||||||||| || |
|
|
| T |
12082002 |
tgtgtagaagtgtgtgatcagaaaattagagtgttgggtaaatccagaaaaag-gggaaaaatatatcgggtaggtattatctctataacttctaggcgc |
12082100 |
T |
|
| Q |
183 |
tataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
241 |
Q |
| |
|
||||| |||||| |||| |||||| || |||||| |||||||||||||||||||| |
|
|
| T |
12082101 |
tataaaataataacatttgaataggagcgagtctcattagaaacactatattgtatctc |
12082159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 81 - 241
Target Start/End: Original strand, 12098988 - 12099144
Alignment:
| Q |
81 |
tgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggt |
180 |
Q |
| |
|
||||||||||||| ||||| | ||||||||||||||||||||||| ||||| | | | |||||| | | ||| |||||||||||||||||| ||||| |
|
|
| T |
12098988 |
tgtgtgtagaagtatgtgaaaggaaaaatagagtgttgagtaaattcagag--tctcg--aaaatagattgagtgagtatcatctctataacttttaggt |
12099083 |
T |
|
| Q |
181 |
gctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
241 |
Q |
| |
|
| ||||| |||||| |||| |||||| ||| ||||||| ||||||| ||||||| |||| |
|
|
| T |
12099084 |
gttataaaataatatcatttgaataggagtgagtctcactagaaacacaatattgtgtctc |
12099144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 78 - 240
Target Start/End: Complemental strand, 42911372 - 42911210
Alignment:
| Q |
78 |
ctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta |
177 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42911372 |
ctgtgtgtgtagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtgtggaaaaaatacactgggtgggtatcatctctataacttctt |
42911273 |
T |
|
| Q |
178 |
ggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatct |
240 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42911272 |
ggtgctataaaataatagcattagaatagaagtaggtctcaagggaaacactatattgtatct |
42911210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 85 - 241
Target Start/End: Complemental strand, 29107249 - 29107095
Alignment:
| Q |
85 |
tgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtggg-tatcatctctataacttctaggtgct |
183 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| |
|
|
| T |
29107249 |
tgtagaagtgtgtgagagaaaaaatag--tgttgagtaaatccagagagtgtgggaaaaatacattgggtggggtatcatctttataacttctaggtgct |
29107152 |
T |
|
| Q |
184 |
ataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
241 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29107151 |
aaaaaataatagcattagaatagaagtaggtctcacgggaaacactat-ttgtatctc |
29107095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 78 - 241
Target Start/End: Original strand, 51302143 - 51302306
Alignment:
| Q |
78 |
ctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta |
177 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
51302143 |
ctgtgtgtgtagaagtgtgtgtgaggaaaaatagagtattgagtaaatccagagagtgtggataaaatacaccgggtgggaatcatctctataacttcta |
51302242 |
T |
|
| Q |
178 |
ggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
241 |
Q |
| |
|
|||||||||| | ||| ||||| |||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
51302243 |
ggtgctataaaacaattgcattcgaataggagtgggtctcacgggaaacactatattgtatctc |
51302306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 78 - 232
Target Start/End: Original strand, 8539165 - 8539318
Alignment:
| Q |
78 |
ctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttcta |
177 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| || |
|
|
| T |
8539165 |
ctgtgtgtgtagaagtgtgtgagaggaaaaatatagtgttcagtaaattcagagagtgtgggaaaaatacatcggatgggtatcatctctataactttta |
8539264 |
T |
|
| Q |
178 |
ggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactata |
232 |
Q |
| |
|
|||||| ||| ||||||||| | |||||| ||| |||||||| |||||||||||| |
|
|
| T |
8539265 |
ggtgctgtaaaataatagcaatcgaataggagtgggtctcac-ggaaacactata |
8539318 |
T |
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