View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16165_low_23 (Length: 245)

Name: NF16165_low_23
Description: NF16165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16165_low_23
NF16165_low_23
[»] chr4 (2 HSPs)
chr4 (69-222)||(35377507-35377660)
chr4 (10-77)||(35378073-35378140)


Alignment Details
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 35377660 - 35377507
Alignment:
Q  69 tttaaactaacacgagggactctgctcagcaaacgccagaaacttcaagacagatgttgtgaagaaagnnnnnnntactgctaaaccggttgaataacta 168  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| |||||||||    
T  35377660 tttaaagtaacacgagggactctgctcagcaaacgccagaaacttcaagacagatgttgtgaagaaagaaaaaaatactgctaaaccggtagaataacta 35377561  T
Q  169 actacccttcnnnnnnnnctaactaccctactttattcctctaacaaaaaacta 222  Q
    ||||||||||        ||||||||||||||||||||||||||||||||||||    
T  35377560 actacccttcaaaaaaaactaactaccctactttattcctctaacaaaaaacta 35377507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 35378140 - 35378073
Alignment:
Q  10 catcatcacatatgttatcaactatatgccacatttgaccaaacagtgcatacaaatattttaaacta 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35378140 catcatcacatatgttatcaactatatgccacatttgaccaaacagtgcatacaaatattttaaacta 35378073  T

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