View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16165_low_3 (Length: 676)
Name: NF16165_low_3
Description: NF16165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16165_low_3 |
 | |
|
| [»] scaffold0251 (1 HSPs) |
| | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
|
| [»] scaffold0007 (2 HSPs) |
| | |
|
| [»] scaffold0298 (2 HSPs) |
| | |
|
| [»] scaffold0124 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-101; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 34438136 - 34438355
Alignment:
| Q |
11 |
catcatcatcaatcctcagaatgatgttcaagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattataca |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34438136 |
catcatcatcaatcctcggaatgatgttcgagaagtgcgccaaagtccatccttgcaaacacaaagaaacaaatatttatatcaccgcaagaattataca |
34438235 |
T |
|
| Q |
111 |
aacaactaaacatttacgatccaataagtaaaaaagaaggaaaaacaagtattgccacaagcaatgtcatgtaaccaccacaagaggccacagatgaatc |
210 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
34438236 |
aacaactaaacatttacaatccaataagtaaaaaagaaggaaaaacaaatattaccacaagcaatgtcatgtaaccaccacaggaggccacagatgagtc |
34438335 |
T |
|
| Q |
211 |
ggaggtaagagatagctgct |
230 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
34438336 |
ggaggtaagagatagctgct |
34438355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 6777683 - 6777465
Alignment:
| Q |
11 |
catcatcatcaatcctcagaatgatgttcaagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattataca |
110 |
Q |
| |
|
||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||| |
|
|
| T |
6777683 |
catcatcatcaatcctcagaatgatattcgaaaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatagcagtgcaaaaattataca |
6777584 |
T |
|
| Q |
111 |
aacaactaaacatttacgatccaataagtaaaaaagaaggaaaaacaagtattgccacaagcaatgtcatgtaaccaccacaagaggccacagatgaatc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||| |||||| || |||| || |
|
|
| T |
6777583 |
aacaactaaacatttacgatccaataagtaaaaaagaa-gaaaaacaaatattaccacaagcaatgtcatgtaaccaccacaggaggcctcatatgagtc |
6777485 |
T |
|
| Q |
211 |
ggaggtaagagatagctgct |
230 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6777484 |
ggaggtaagagatagctgct |
6777465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 1596594 - 1596812
Alignment:
| Q |
12 |
atcatcatcaatcctcagaatgatgttcaagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattatacaa |
111 |
Q |
| |
|
|||||||||||| ||| |||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
1596594 |
atcatcatcaattctcggaatgatgtttgagaagcgcgccaaagtccatgcctgcaaacacaaagaaacaaatatttatattagcgcaagaattatacaa |
1596693 |
T |
|
| Q |
112 |
acaactaaacatttacgatccaataagtaaaaaagaaggaaaaacaagtattgccacaagcaatgtcatgtaaccaccacaagaggccacagatgaatcg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||| |||||||||||||||| |||||||||||||| ||| |
|
|
| T |
1596694 |
acaactaaacatttacgatccaataagtaaaaaagaagaaaaaacaaatattaccacaagcaatatcatgtaaccaccacaggaggccacagatgagtcg |
1596793 |
T |
|
| Q |
212 |
gaggtaagagatagctgct |
230 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
1596794 |
gaggcaagagatagctgct |
1596812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 57 - 230
Target Start/End: Complemental strand, 12073902 - 12073732
Alignment:
| Q |
57 |
ccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattatacaaacaactaaacatttacgatccaataagtaaaaaagaaggaaaaac |
156 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12073902 |
ccatccctgtaaacacaaagaaacaaat--ttatatcagcacaaatattatacaaacaactatacatttacgatccaataagtaaaaaagaagg-aaaac |
12073806 |
T |
|
| Q |
157 |
aagtattgccacaagcaatgtcatgtaaccaccacaagaggccacagatgaatcggaggtaagagatagctgct |
230 |
Q |
| |
|
|| |||| |||||||||| | ||||| |||||| | |||||||| |||| | | |||||||||||| ||||| |
|
|
| T |
12073805 |
aattattaccacaagcaagcttatgtacccaccatagaaggccacatatgagttgaaggtaagagataactgct |
12073732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 58 - 185
Target Start/End: Complemental strand, 19198957 - 19198833
Alignment:
| Q |
58 |
catccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattatacaaacaactaaacatttacgatccaataagtaaaaaagaaggaaaaaca |
157 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| | |||| |||||||||||||||| ||||||| ||| |||||||||||||| || |||||||| |
|
|
| T |
19198957 |
catccctgcaaacacaaagaaacaaat--ttatatcagcacaagtattatacaaacaactatacatttaagattcaataagtaaaaaataa-gaaaaaca |
19198861 |
T |
|
| Q |
158 |
agtattgccacaagcaatgtcatgtaac |
185 |
Q |
| |
|
|||| |||||||||| ||||||||| |
|
|
| T |
19198860 |
gttattaccacaagcaagatcatgtaac |
19198833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 3e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 37228082 - 37228301
Alignment:
| Q |
11 |
catcatcatcaatcctcagaatgatgttcaagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattataca |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37228082 |
catcatcatcaatcctctgaatgatgttcgagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccacaagaattataca |
37228181 |
T |
|
| Q |
111 |
aacaactaaacatttacgatccaataagtaaaaaagaaggaaaaacaagtattgccacaagcaatgtcatgtaaccaccacaagaggccacagatgaatc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||| ||| |||||||||||||| || |
|
|
| T |
37228182 |
aacaactaaacatttacgatccaataagtaaaaatgaaggaaaaacaaatattaccacaagcaatgtcatgtaaccactacaggaggccacagatgagtc |
37228281 |
T |
|
| Q |
211 |
ggaggtaagagatagctgct |
230 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
37228282 |
ggaggtaagagatagctgct |
37228301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 351 - 646
Target Start/End: Complemental strand, 22243726 - 22243432
Alignment:
| Q |
351 |
gagtcaagtagtgtattagtacctattattactat----caagggctagatgatataacaaaggtgtggcctacatttaagtggtaacagtaatggaaaa |
446 |
Q |
| |
|
||||||| || | ||||| |||||||||||||||| ||| | ||| |||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
22243726 |
gagtcaattaatatattactacctattattactatgtatcaatgactacatgatataacaaaggtgtggcctacatttaagtgctaacagtaatgaaaaa |
22243627 |
T |
|
| Q |
447 |
attacaaatagcatggtttaattagcacatatggccacacgtccaacttgttttggtattagnnnnnnnnnnncaaatgggctttgacccaattgggtat |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||| |||||||||||||| |
|
|
| T |
22243626 |
attacaaatagcatggtttaattagcacatatggccacacgtgcaacttgttttggtattag----aaaaaaacaaatgggttttcacccaattgggtat |
22243531 |
T |
|
| Q |
547 |
tggttgacccgagaggaacaaaaagatggaagtgagggaataacaaagagagccgcacaggaactaggcaggaaccacacatcacatttttgggagatta |
646 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || || |||||||||||||||||||||| |
|
|
| T |
22243530 |
tggttgacccgagaggaacaaaaagatggaagtgagggaataacaagaggagccgcacaggaactaggcagaaaaca-acatcacatttttgggagatta |
22243432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 2640810 - 2640729
Alignment:
| Q |
44 |
agtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattatacaaacaactaaacatttac |
127 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||| |||||||||| | ||| || ||||||||||||| |||||||| |
|
|
| T |
2640810 |
agtgcgccaaaacccatccctgcaaacacaaagagacaa--atttatatcatcataagtatcatacaaacaactatacatttac |
2640729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 7e-97; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 40554775 - 40554993
Alignment:
| Q |
11 |
catcatcatcaatcctcagaatgatgttcaagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattataca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40554775 |
catcatcatcaatcctcagaatgatgttcgagaagtgcgccaaagtccatccctgcaaaaa-aaagaaacaaatatttatatcaccgcaagaattataca |
40554873 |
T |
|
| Q |
111 |
aacaactaaacatttacgatccaataagtaaaaaagaaggaaaaacaagtattgccacaagcaatgtcatgtaaccaccacaagaggccacagatgaatc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
40554874 |
aacaactaaacatttacgatccaataagtaaaaaagaaggaaaaacaaatattaccacaagcaatgtcatgtaaccaccacaagaggccatagatgagtc |
40554973 |
T |
|
| Q |
211 |
ggaggtaagagatagctgct |
230 |
Q |
| |
|
| |||||||||||| ||||| |
|
|
| T |
40554974 |
gcaggtaagagataactgct |
40554993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 48998972 - 48998753
Alignment:
| Q |
11 |
catcatcatcaatcctcagaatgatgttcaagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattataca |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48998972 |
catcatcatcaatcctcggaatgatgttcgagaagtgcgccaaagtccatccttgcaaacacaaagaaacaaatatttatatcaccgcaagaattataca |
48998873 |
T |
|
| Q |
111 |
aacaactaaacatttacgatccaataagtaaaaaagaaggaaaaacaagtattgccacaagcaatgtcatgtaaccaccacaagaggccacagatgaatc |
210 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| ||||||||| || |
|
|
| T |
48998872 |
aacaactaaacatttacaatccaataagtaaaaaagaaggaaaaacaaatattatcacaagcaatgtcatgtaaccaccacaggagggcacagatgagtc |
48998773 |
T |
|
| Q |
211 |
ggaggtaagagatagctgct |
230 |
Q |
| |
|
||| |||| |||||| |||| |
|
|
| T |
48998772 |
ggaagtaaaagatagttgct |
48998753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 33297493 - 33297712
Alignment:
| Q |
11 |
catcatcatcaatcctcagaatgatgttcaagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattataca |
110 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33297493 |
catcatgatcaatcctcagaatgatgttcgagaattgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgtaagaattataca |
33297592 |
T |
|
| Q |
111 |
aacaactaaacatttacgatccaataagtaaaaaagaaggaaaaacaagtattgccacaagcaatgtcatgtaaccaccacaagaggccacagatgaatc |
210 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||| |||||||||||||||| ||||||| | |||| || |
|
|
| T |
33297593 |
aacgactaaacatttgcgatccaataagtaaaaaagaaggaaaaacaaatattaccacaaacaatatcatgtaaccaccacaggaggccatatatgagtc |
33297692 |
T |
|
| Q |
211 |
ggaggtaagagatagctgct |
230 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
33297693 |
ggaggtaagagatagatgct |
33297712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 43783061 - 43783280
Alignment:
| Q |
11 |
catcatcatcaatcctcagaatgatgttcaagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattataca |
110 |
Q |
| |
|
|||||| || ||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||||||||| |||||||| | |||| |||||||| |
|
|
| T |
43783061 |
catcattatgaatcctcggaatgaggttcgtgaagtgcgccaaagcccatccctgcaaacacaaagaaacaaat--ttatatcagcacaagtattataca |
43783158 |
T |
|
| Q |
111 |
aacaactaaacatttacgatccaataagtaaaaaagaaggaaaaaca--agtattgccacaagcaatgtcatgtaaccaccacaagaggccacagatgaa |
208 |
Q |
| |
|
||||| || | |||||||||||||||||||||||| | |||||| | | |||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43783159 |
aacaattataaatttacgatccaataagtaaaaaaataagaaaaaaataattattaccacaagcaaggtcatgtaaccaccacaagaggccacagatgag |
43783258 |
T |
|
| Q |
209 |
tcggaggtaagagatagctgct |
230 |
Q |
| |
|
|||| | |||||||||| |||| |
|
|
| T |
43783259 |
tcggtgataagagatagttgct |
43783280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 42 - 190
Target Start/End: Original strand, 3376289 - 3376437
Alignment:
| Q |
42 |
gaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattatacaaacaactaaacatttacgatccaataagtaa |
141 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||| |||||| | | || | |||||||||||||||| ||||| |||||||| ||||||| |
|
|
| T |
3376289 |
gaagcgcgccaaaacccatccctgcaaacacaaagaaacaaaa--ttatattagcacatgtattatacaaacaactatacattaacgatccactaagtaa |
3376386 |
T |
|
| Q |
142 |
aaaaga--aggaaaaacaagtattgccacaagcaatgtcatgtaaccacca |
190 |
Q |
| |
|
|||| | | ||||||||| |||| |||||||||| ||||||||||||||| |
|
|
| T |
3376387 |
aaaaaaataagaaaaacaattattaccacaagcaaggtcatgtaaccacca |
3376437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 45152491 - 45152423
Alignment:
| Q |
58 |
catccctgcaa-acacaaagaaacaaatatttatatcaccgcaagaattatacaaacaactaaacatttac |
127 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||| | |||| |||||||||||||||| |||||||| |
|
|
| T |
45152491 |
catccctgcaacacacaaagaaacaaat--ttatatcagcacaagtattatacaaacaactatacatttac |
45152423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 174; Significance: 3e-93; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 2742856 - 2742639
Alignment:
| Q |
13 |
tcatcatcaatcctcagaatgatgttcaagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattatacaaa |
112 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2742856 |
tcatcatcaatcctcggaatgatgttcgagaagtgcgtcaaagtccatccctgcaaacataaagaaacaaatatttatatcaccgcaagaattatacaaa |
2742757 |
T |
|
| Q |
113 |
caactaaacatttacgatccaataagtaaaaaagaaggaaaaacaagtattgccacaagcaatgtcatgtaaccaccacaagaggccacagatgaatcgg |
212 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||| |||||| |||| |
|
|
| T |
2742756 |
caattaaacatttacgatccaataagtaaaaaagaaggaaaaacaaatattaccacaagaaatgtcatgtaaccaccacatgaggccatagatgagtcgg |
2742657 |
T |
|
| Q |
213 |
aggtaagagatagctgct |
230 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2742656 |
aggtaagagatagctgct |
2742639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 383 - 618
Target Start/End: Complemental strand, 37252379 - 37252148
Alignment:
| Q |
383 |
tatcaagggctagatgatataacaaaggtgtggcctacatttaagtggtaacagtaatggaaaaattacaaatagcatggtttaattagcacatatggcc |
482 |
Q |
| |
|
|||||| | ||| |||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37252379 |
tatcaatgactacatgatataacaaaggtgtagcctacatttaagtgctaatagtaatggaaaaattacaaatagcatggtttaattagcacatatggcc |
37252280 |
T |
|
| Q |
483 |
acacgtccaacttgttttggtattagnnnnnnnnnnncaaatgggctttgacccaattgggtattggttgacccgagaggaacaaaaagatggaagtgag |
582 |
Q |
| |
|
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37252279 |
acacgtgcaacttgttttggtatcagaaaaaaa----caaatgggctttgacccaattgggtattgattgacccgagaggaacaaaaagatggaagtgag |
37252184 |
T |
|
| Q |
583 |
ggaataacaaagagagccgcacaggaactaggcagg |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
37252183 |
ggaataacaaagagagccgcacaggaactaggcagg |
37252148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 13273942 - 13273796
Alignment:
| Q |
11 |
catcatcatcaatcctcagaatgatgttcaagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattataca |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13273942 |
catcatcatcaatcctctgaatgatgttcgagaagtgtgtcaaagtccatcc-tgcaaacacaaagaaacaaatatttatatcaccgcaataattataca |
13273844 |
T |
|
| Q |
111 |
aacaactaaacatttacgatccaataagtaaaaaagaaggaaaaacaa |
158 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13273843 |
aacaactaaacatttacgattcaataagtaaaaaagaaggaaaaacaa |
13273796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 20943565 - 20943491
Alignment:
| Q |
42 |
gaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattatacaaacaacta |
118 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| |||| |||||||||| | |||| || ||||||||||||| |
|
|
| T |
20943565 |
gaagtgcgccataacccatccctgcaaacacaaagagacaa--atttatatcagcacaagtatcatacaaacaacta |
20943491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 168; Significance: 1e-89; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 32308125 - 32308339
Alignment:
| Q |
11 |
catcatcatcaatcctcagaatgatgttcaagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattataca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32308125 |
catcatcatcaatcctcagaatgatgtttcagaagtgcgccaaagtctatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattataca |
32308224 |
T |
|
| Q |
111 |
aacaactaaacatttacgatccaataagtaaaaaagaaggaaaaacaagtattgccacaagcaatgtcatgtaaccaccacaagaggccacagatgaatc |
210 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| |||||||||||||||||||| |||||||||||||| || |
|
|
| T |
32308225 |
aataactaaacatttacgatccaataagtaaaaaagaa-gaaaaacaaatattaccacaaacaatgtcatgtaaccaccacgggaggccacagatgagtc |
32308323 |
T |
|
| Q |
211 |
ggaggtaagagatagc |
226 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
32308324 |
ggaggtaagagatagc |
32308339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 39465211 - 39464993
Alignment:
| Q |
11 |
catcatcatcaatcctcagaatgatgttcaagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattataca |
110 |
Q |
| |
|
||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||| |
|
|
| T |
39465211 |
catcatcatcaatcctcggaataatgttcgagaagtgcgccaaagtccatccctgcaaacacagaaaaa-aaatatttatatcaccgcaagaattataca |
39465113 |
T |
|
| Q |
111 |
aacaactaaacatttacgatccaataagtaaaaaagaaggaaaaacaagtattgccacaagcaatgtcatgtaaccaccacaagaggccacagatgaatc |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| | |||||||||||||| || |
|
|
| T |
39465112 |
aacaactaaacatttacgattcaataagtaaaaaagaaggaaaaacaaatattaccacaagcaatgtcatggaaccaccataggaggccacagatgagtc |
39465013 |
T |
|
| Q |
211 |
ggaggtaagagatagctgct |
230 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
39465012 |
ggaggtaagagatagatgct |
39464993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 42705494 - 42705713
Alignment:
| Q |
11 |
catcatcatcaatcctcagaatgatgttcaagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattataca |
110 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| | ||||||||||||| |
|
|
| T |
42705494 |
catcatcatcaatcctcataatgatgttcgagaagtgcgccaaagtcaatccctgcaaacacaaagaatcaaatatttatatcagcacaagaattataca |
42705593 |
T |
|
| Q |
111 |
aacaactaaacatttacgatccaataagtaaaaaagaaggaaaaacaagtattgccacaagcaatgtcatgtaaccaccacaagaggccacagatgaatc |
210 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||| | ||||||||| |||| |||||||||||||||||| ||||||||| |||||||||||||| || |
|
|
| T |
42705594 |
aacaactaaacatttatgattcaataagtaaaaaaagaagaaaaacaaatattaccacaagcaatgtcatgttaccaccacaggaggccacagatgagtc |
42705693 |
T |
|
| Q |
211 |
ggaggtaagagatagctgct |
230 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
42705694 |
ggaggtaagagatagctgct |
42705713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 3680686 - 3680468
Alignment:
| Q |
11 |
catcatcatcaatcctcagaatgatgttcaagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattataca |
110 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
3680686 |
catcatcatcaatccctagaatgatgttcgagaagtgcgccaaagtccatccttgcaaacacaaacaaacaaatatttatatcaccacaagaattataca |
3680587 |
T |
|
| Q |
111 |
aacaactaaacatttacgatccaataagtaaaaaagaaggaaaaacaagtattgccacaagcaatgtcatgtaaccaccacaagaggccacagatgaatc |
210 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||| ||| ||||| |||| || |
|
|
| T |
3680586 |
aacaactaaacatttatgatccaaaaagtaaaaaagaa-gaaaaacaaatatcaccacaagcaatgtcatgtaaccaccacaggagcccacaaatgagtc |
3680488 |
T |
|
| Q |
211 |
ggaggtaagagatagctgct |
230 |
Q |
| |
|
||| |||||||||| ||||| |
|
|
| T |
3680487 |
ggaagtaagagataactgct |
3680468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 25147229 - 25147083
Alignment:
| Q |
11 |
catcatcatcaatcctcagaatgatgttcaagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattataca |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25147229 |
catcatcatcaatcctc-gaatgatgttcgagaagtgcgccaaagtccatacctataaacacaaagaaacaaatatttatatcaccgcaagaattataca |
25147131 |
T |
|
| Q |
111 |
aacaactaaacatttacgatccaataagtaaaaaagaaggaaaaacaa |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25147130 |
aacaactaaacatttacgatccaataagtaataaagaaggaaaaacaa |
25147083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 3e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 38457345 - 38457126
Alignment:
| Q |
11 |
catcatcatcaatcctcagaatgatgttcaagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattataca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | || ||||||||| |
|
|
| T |
38457345 |
catcatcatcaatcctcagaatgatgttcgagaagtgagccaaagtccatacctgcaaacacaaagaaacaaatatttatatcactgtaaaaattataca |
38457246 |
T |
|
| Q |
111 |
aacaactaaacatttacgatccaataagtaaaaaagaaggaaaaacaagtattgccacaagcaatgtcatgtaaccaccacaagaggccacagatgaatc |
210 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||| |||| || |
|
|
| T |
38457245 |
aacaactaaacatttacgatctaataagtaaaaaggaaggaaaaacaaatatttccacaagcaatgtcatgtaaccaccacaggaggccacaaatgagtc |
38457146 |
T |
|
| Q |
211 |
ggaggtaagagatagctgct |
230 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
38457145 |
ggaggtaagagatagttgct |
38457126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 12627270 - 12627074
Alignment:
| Q |
23 |
tcctcagaatgatgttcaagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattatacaaacaactaaaca |
122 |
Q |
| |
|
|||||| ||||| |||| ||||||||| ||| |||||||||||||||||||||||||| |||||| | |||| |||||||||||||||| ||| |
|
|
| T |
12627270 |
tcctcataatgaggttcctgaagtgcgcaaaaacccatccctgcaaacacaaagaaacaac-----atatcaacacaagtattatacaaacaactataca |
12627176 |
T |
|
| Q |
123 |
tttacgatccaataagtaaaaaagaaggaaaaacaagtattgccacaagcaatgtcatgtaaccaccacaagaggccacagatgaatcggaggtaagaga |
222 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||| |||| |||||||||| ||||| ||||||||||||||||||||| || | ||||| |||||||| |
|
|
| T |
12627175 |
tttacgatccaataagtgaaaaataag-aaaaacaattattaccacaagcaaggtcatttaaccaccacaagaggccacaaatcagtcggaagtaagaga |
12627077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 164; Significance: 3e-87; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 6286093 - 6286311
Alignment:
| Q |
11 |
catcatcatcaatcctcagaatgatgttcaagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattataca |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6286093 |
catcatcatcaatcctcggaatgatgttcgagaagttcgccaaagtacatccctgcaaacacaaagaaacaaatatttatatcaccgcaataattataca |
6286192 |
T |
|
| Q |
111 |
aacaactaaacatttacgatccaataagtaaaaaagaaggaaaaacaagtattgccacaagcaatgtcatgtaaccaccacaagaggccacagatgaatc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||| |||| |||||||||||||||||||||||||||| ||| ||||| |||| || |
|
|
| T |
6286193 |
aacaactaaacatttacgatccaataagtaaaaaagaa-gataaacaaatattaccacaagcaatgtcatgtaaccaccacaggagaccacaaatgagtc |
6286291 |
T |
|
| Q |
211 |
ggaggtaagagatagctgct |
230 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6286292 |
ggaggtaagagatagctgct |
6286311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 35014233 - 35014015
Alignment:
| Q |
11 |
catcatcatcaatcctcagaatgatgttcaagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattataca |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||| |||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35014233 |
catcatcatcaatcctcggaatgatgttcgagaagtgtgccaaagttcatccatgcaaacacaaaaaaacaaatatttatatcaccgcaagaattataca |
35014134 |
T |
|
| Q |
111 |
aacaactaaacatttacgatccaataagtaaaaaagaaggaaaaacaagtattgccacaagcaatgtcatgtaaccaccacaagaggccacagatgaatc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||| ||||||||| |||| || |
|
|
| T |
35014133 |
aacaactaaacatttacgatccaataagtaaaaaagaa-gaaaaacaaatattatcacaagcaatgtcatgtaaccaccacaggaggccacatatgagtc |
35014035 |
T |
|
| Q |
211 |
ggaggtaagagatagctgct |
230 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
35014034 |
gaaggtaagagatagctgct |
35014015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 561
Target Start/End: Original strand, 32821623 - 32821656
Alignment:
| Q |
528 |
ctttgacccaattgggtattggttgacccgagag |
561 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
32821623 |
ctttgacccaattgggtattggttaacccgagag |
32821656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 3e-87; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 28035508 - 28035289
Alignment:
| Q |
11 |
catcatcatcaatcctcagaatgatgttcaagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattataca |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28035508 |
catcatcatcaatcctcggaatgatgttcgagaagttcaccaaagtccatccctgtaaacacaaagaaacaaatatttatatcaccgcaagaattatacg |
28035409 |
T |
|
| Q |
111 |
aacaactaaacatttacgatccaataagtaaaaaagaaggaaaaacaagtattgccacaagcaatgtcatgtaaccaccacaagaggccacagatgaatc |
210 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||| || ||| |||||||||| || |
|
|
| T |
28035408 |
aacaactaaacatttacaatccaataagtaaaaaagaaggaaaaacaaatattaccacaatcaatgtcatgtaaccaccgcaggagaccacagatgagtc |
28035309 |
T |
|
| Q |
211 |
ggaggtaagagatagctgct |
230 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
28035308 |
ggaggtaagagatagctgct |
28035289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 31117251 - 31117467
Alignment:
| Q |
11 |
catcatcatcaatcctcagaatgatgttcaagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattataca |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| | |||| |||||||| |
|
|
| T |
31117251 |
catcatcatcaatcctcggaatgatgttcgtgaagtgcgtcaaagtccatccctgcaaacacaaagaaacaa--atttatatcagcacaagtattataca |
31117348 |
T |
|
| Q |
111 |
aacaactaaacatttacgatccaataagtaaaaaagaaggaaaaacaagtattgccacaagcaatgtcatgtaaccaccacaagaggccacagatgaatc |
210 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||| ||| ||||| |||| |||||||||| |||||||||||||||| ||||||| |||| | || |
|
|
| T |
31117349 |
aacaactatacatttacgatcaaataagtaaaaaagaa-gaacaacaaatattaccacaagcaagctcatgtaaccaccacaggaggccatagataagtc |
31117447 |
T |
|
| Q |
211 |
ggaggtaagagatagctgct |
230 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
31117448 |
ggaggtaagagataactgct |
31117467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 18204973 - 18205025
Alignment:
| Q |
178 |
catgtaaccaccacaagaggccacagatgaatcggaggtaagagatagctgct |
230 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
18204973 |
catgtaaccaccacaagaggccacatatgagtcggaggtaagagatagctgct |
18205025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 190
Target Start/End: Original strand, 11806067 - 11806209
Alignment:
| Q |
42 |
gaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattatacaaacaactaaacatttacgatccaataagtaa |
141 |
Q |
| |
|
||||||||| ||| ||||| ||||||||||||||| |||| |||||||||| | ||| || |||| |||||||| ||||||||||| || || || |
|
|
| T |
11806067 |
gaagtgcgcaaaaacccatctctgcaaacacaaagagacaa--atttatatcagcataagtatcatacgaacaactatacatttacgattcacta---aa |
11806161 |
T |
|
| Q |
142 |
aaaagaaggaaaaacaagtattgccacaagcaatgtcatgtaaccacca |
190 |
Q |
| |
|
|||| || |||||| | ||||| ||||||||| || |||||||||||| |
|
|
| T |
11806162 |
aaaataa-gaaaaaaatgtattatcacaagcaaggttatgtaaccacca |
11806209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 156; Significance: 2e-82; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 17340 - 17558
Alignment:
| Q |
11 |
catcatcatcaatcctcagaatgatgttcaagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattataca |
110 |
Q |
| |
|
||||||||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17340 |
catcatcatcaattctcggaatgatgttcgagaagtgtgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcagcgcaagaattataca |
17439 |
T |
|
| Q |
111 |
aacaactaaacatttacgatccaataagtaaaaaagaaggaaaaacaagtattgccacaagcaatgtcatgtaaccaccacaagaggccacagatgaatc |
210 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||| ||||||||| |||| ||||||| |||||||||||||||||||| ||||||||| ||| || |
|
|
| T |
17440 |
aagaactaaacatttacgatccaataaataaaaaagaa-gaaaaacaaatattaccacaagaaatgtcatgtaaccaccacaggaggccacatatgtgtc |
17538 |
T |
|
| Q |
211 |
ggaggtaagagatagctgct |
230 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
17539 |
ggaggtaagagatagctgct |
17558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 148; Significance: 9e-78; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 32600 - 32818
Alignment:
| Q |
11 |
catcatcatcaatcctcagaatgatgttcaagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattataca |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| |||| |||||||||||||||||||||||| | |||| |||||||| |
|
|
| T |
32600 |
catcatcatcaatcctcggaatgatgttcgtgaagtgcgccaaagttcatccctacaaatacaaagaaacaaatatttatatcagcacaagtattataca |
32699 |
T |
|
| Q |
111 |
aacaactaaacatttacgatccaataagtaaaaaagaaggaaaaacaagtattgccacaagcaatgtcatgtaaccaccacaagaggccacagatgaatc |
210 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |||||||||| |||| |||||||||||||||| |||||||||| || |
|
|
| T |
32700 |
aacaactaaacatttatgatccaataagtaaaaaagaa-gaaaaacaaatattaccacaagcaaggtcaagtaaccaccacaagagcccacagatgagtc |
32798 |
T |
|
| Q |
211 |
ggaggtaagagatagctgct |
230 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
32799 |
ggaggtaagagatagctgct |
32818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 180732 - 180895
Alignment:
| Q |
58 |
catccctgcaaacacaaagaaacaaatatttatatcaccgcaagaattatacaaacaactaaacatttacgatccaataagtaaaaaagaaggaaaaaca |
157 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||| | ||| ||||||||||||| || |||||||||||||||||||||||||| || |||||||| |
|
|
| T |
180732 |
catccctgcaaacagaaagaaacaaat--ttatatcagcagaagtattatacaaacaattatacatttacgatccaataagtaaaaaataa-gaaaaaca |
180828 |
T |
|
| Q |
158 |
agtattgccacaagcaatgtcatgtaaccaccacaagaggccacagatgaatcggaggtaagagata |
224 |
Q |
| |
|
| |||| ||||| ||| || || ||||||||||| ||||||||| |||| |||||| ||||||||| |
|
|
| T |
180829 |
attattatcacaaacaaggttatataaccaccacaggaggccacatatgagtcggagataagagata |
180895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 274267 - 274347
Alignment:
| Q |
11 |
catcatcatcaatcctcagaatgatgttcaagaagtgcgccaaagtccatccctgcaaacacaaagaaacaaatatttata |
91 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
274267 |
catcatcatcaatcctcggaatgatgttcgagaagtgcgccaaagtccatccctacaaacacaaagaaacaaatatttata |
274347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 274358 - 274415
Alignment:
| Q |
173 |
aatgtcatgtaaccaccacaagaggccacagatgaatcggaggtaagagatagctgct |
230 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
274358 |
aatgtcatgtaaccaccacaggaggccacagatgagtcggaggtaagagatagctgct |
274415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0298 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0298
Description:
Target: scaffold0298; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 396 - 429
Target Start/End: Complemental strand, 12692 - 12659
Alignment:
| Q |
396 |
atgatataacaaaggtgtggcctacatttaagtg |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
12692 |
atgatataacaaaggtgtggcctacatttaagtg |
12659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0298; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 396 - 429
Target Start/End: Complemental strand, 16462 - 16429
Alignment:
| Q |
396 |
atgatataacaaaggtgtggcctacatttaagtg |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
16462 |
atgatataacaaaggtgtggcctacatttaagtg |
16429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0124 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0124
Description:
Target: scaffold0124; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 396 - 429
Target Start/End: Original strand, 11865 - 11898
Alignment:
| Q |
396 |
atgatataacaaaggtgtggcctacatttaagtg |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
11865 |
atgatataacaaaggtgtggcctacatttaagtg |
11898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University