View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16165_low_8 (Length: 480)

Name: NF16165_low_8
Description: NF16165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16165_low_8
NF16165_low_8
[»] chr5 (13 HSPs)
chr5 (123-461)||(7451345-7451682)
chr5 (1-205)||(18593471-18593674)
chr5 (1-126)||(7452895-7453020)
chr5 (1-205)||(29087707-29087903)
chr5 (1-146)||(34378386-34378531)
chr5 (8-156)||(5656749-5656897)
chr5 (1-156)||(7161663-7161818)
chr5 (1-108)||(698692-698799)
chr5 (1-91)||(18313303-18313393)
chr5 (1-94)||(18255099-18255192)
chr5 (52-103)||(41250893-41250944)
chr5 (114-156)||(18313406-18313448)
chr5 (172-205)||(34378326-34378359)
[»] chr1 (15 HSPs)
chr1 (1-205)||(30685573-30685777)
chr1 (5-205)||(24449584-24449783)
chr1 (1-155)||(40216155-40216308)
chr1 (1-146)||(7002476-7002619)
chr1 (8-153)||(46814121-46814266)
chr1 (1-205)||(5389077-5389275)
chr1 (1-205)||(24684142-24684344)
chr1 (1-145)||(6804825-6804969)
chr1 (1-146)||(31584689-31584833)
chr1 (1-108)||(41920782-41920889)
chr1 (1-205)||(5459389-5459587)
chr1 (1-98)||(14320658-14320755)
chr1 (7-96)||(27031496-27031585)
chr1 (1-146)||(24659217-24659351)
chr1 (52-156)||(46692519-46692624)
[»] chr8 (25 HSPs)
chr8 (1-205)||(20138655-20138858)
chr8 (1-156)||(12897925-12898080)
chr8 (1-155)||(31207011-31207165)
chr8 (1-202)||(36631055-36631254)
chr8 (5-205)||(16457128-16457328)
chr8 (1-156)||(32065934-32066088)
chr8 (1-146)||(22773908-22774053)
chr8 (5-146)||(37986508-37986649)
chr8 (1-205)||(24995044-24995247)
chr8 (40-154)||(27889125-27889239)
chr8 (40-154)||(27947783-27947897)
chr8 (1-153)||(15821026-15821177)
chr8 (1-146)||(9519793-9519938)
chr8 (2-155)||(35821534-35821685)
chr8 (4-96)||(35815896-35815988)
chr8 (1-99)||(3584071-3584170)
chr8 (1-154)||(41893052-41893206)
chr8 (7-146)||(38577441-38577580)
chr8 (1-94)||(13538324-13538417)
chr8 (1-94)||(13686057-13686150)
chr8 (1-61)||(9659474-9659534)
chr8 (56-156)||(34388711-34388811)
chr8 (1-37)||(34866309-34866345)
chr8 (56-99)||(10837941-10837984)
chr8 (169-205)||(9519728-9519764)
[»] chr7 (22 HSPs)
chr7 (1-205)||(44353213-44353416)
chr7 (1-205)||(31971784-31971987)
chr7 (1-154)||(5859932-5860085)
chr7 (1-154)||(25161088-25161240)
chr7 (1-146)||(47325534-47325678)
chr7 (1-156)||(10244457-10244612)
chr7 (1-146)||(33434480-33434625)
chr7 (2-156)||(41089396-41089547)
chr7 (1-152)||(3419048-3419197)
chr7 (2-205)||(3867344-3867545)
chr7 (40-156)||(38306537-38306653)
chr7 (3-156)||(37795273-37795426)
chr7 (3-156)||(37795601-37795754)
chr7 (1-146)||(34391469-34391614)
chr7 (1-194)||(40726140-40726347)
chr7 (1-105)||(42454383-42454487)
chr7 (1-140)||(6585179-6585318)
chr7 (15-152)||(3419321-3419456)
chr7 (6-155)||(43482183-43482331)
chr7 (1-102)||(48161690-48161790)
chr7 (3-98)||(11378772-11378866)
chr7 (1-75)||(35745481-35745555)
[»] chr3 (25 HSPs)
chr3 (1-205)||(47235926-47236130)
chr3 (1-146)||(2392152-2392297)
chr3 (1-146)||(2393915-2394060)
chr3 (1-205)||(34475407-34475609)
chr3 (1-156)||(45164131-45164285)
chr3 (1-156)||(19176783-19176938)
chr3 (1-156)||(31483157-31483312)
chr3 (1-102)||(21343678-21343779)
chr3 (1-205)||(53248129-53248332)
chr3 (23-143)||(30352110-30352230)
chr3 (8-146)||(17551244-17551382)
chr3 (7-153)||(40023224-40023370)
chr3 (9-142)||(9583710-9583843)
chr3 (1-97)||(50305223-50305319)
chr3 (13-156)||(43012654-43012796)
chr3 (1-99)||(23327997-23328095)
chr3 (1-99)||(45399119-45399217)
chr3 (1-98)||(4463734-4463831)
chr3 (1-96)||(25506719-25506814)
chr3 (7-99)||(50559978-50560070)
chr3 (3-108)||(37158629-37158735)
chr3 (1-64)||(47439284-47439347)
chr3 (1-94)||(5556918-5557011)
chr3 (169-205)||(2392323-2392359)
chr3 (169-205)||(2394087-2394123)
[»] chr4 (19 HSPs)
chr4 (1-156)||(27555579-27555735)
chr4 (1-156)||(30964714-30964869)
chr4 (1-138)||(35329302-35329439)
chr4 (1-205)||(8255255-8255459)
chr4 (1-205)||(8268673-8268877)
chr4 (1-102)||(7703018-7703118)
chr4 (1-105)||(4306033-4306136)
chr4 (1-194)||(30167212-30167407)
chr4 (1-108)||(8705789-8705896)
chr4 (17-205)||(20464818-20465005)
chr4 (1-98)||(46698428-46698525)
chr4 (5-98)||(49528421-49528514)
chr4 (1-96)||(2826118-2826213)
chr4 (2-138)||(11281375-11281511)
chr4 (7-96)||(35341006-35341097)
chr4 (1-156)||(36689454-36689609)
chr4 (6-99)||(31050315-31050408)
chr4 (1-84)||(9750116-9750198)
chr4 (7-99)||(52868766-52868859)
[»] chr6 (9 HSPs)
chr6 (1-156)||(3254234-3254389)
chr6 (5-146)||(3117781-3117922)
chr6 (1-156)||(15944276-15944431)
chr6 (1-108)||(10542156-10542262)
chr6 (44-98)||(33697789-33697843)
chr6 (1-85)||(15132489-15132573)
chr6 (6-74)||(14663414-14663480)
chr6 (99-156)||(14663357-14663414)
chr6 (10-38)||(16598939-16598967)
[»] scaffold0172 (1 HSPs)
scaffold0172 (2-155)||(19196-19349)
[»] chr2 (22 HSPs)
chr2 (1-156)||(387453-387608)
chr2 (1-155)||(39338510-39338665)
chr2 (1-205)||(10524328-10524529)
chr2 (1-95)||(14436916-14437010)
chr2 (1-146)||(5254540-5254684)
chr2 (1-146)||(14405487-14405630)
chr2 (1-96)||(43816096-43816191)
chr2 (1-98)||(3745676-3745773)
chr2 (7-108)||(41877207-41877308)
chr2 (1-99)||(7874610-7874709)
chr2 (1-99)||(14106172-14106269)
chr2 (17-99)||(17116553-17116635)
chr2 (8-97)||(13512495-13512584)
chr2 (7-96)||(43248882-43248971)
chr2 (2-78)||(15457817-15457893)
chr2 (11-154)||(22888552-22888694)
chr2 (1-99)||(7461010-7461107)
chr2 (1-98)||(45311453-45311550)
chr2 (1-67)||(9823695-9823761)
chr2 (8-84)||(7455601-7455676)
chr2 (1-69)||(25280964-25281032)
chr2 (69-98)||(15457278-15457307)
[»] scaffold0085 (1 HSPs)
scaffold0085 (1-154)||(48614-48767)
[»] scaffold0434 (1 HSPs)
scaffold0434 (24-156)||(2345-2477)
[»] scaffold0343 (1 HSPs)
scaffold0343 (7-146)||(5991-6131)
[»] scaffold0068 (1 HSPs)
scaffold0068 (1-54)||(35473-35526)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 123 - 461
Target Start/End: Complemental strand, 7451682 - 7451345
Alignment:
Q  123 ccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatcgtcacacacaagcacaagcacc 222  Q
    ||||||||| |||||||||||||||||| |||||        ||| ||||| |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  7451682 ccaccaaaatacatcaccacctaacacaaactccaaaaaaa-caagcactgcaaacacggtatccaccaccttccatcgtcacacacaagcacaagcacc 7451584  T
Q  223 gtaaaaacaaaaggtatctaattattatagttgattaattatacacaatgaactgtcaattttgttgtgttgtatatgtcacacacaaacaatacacttc 322  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7451583 ttaaagacaaaaggtatctaattattatagttgattaattatacacaatgaactgtcaattttgttgtgttgtatatgtcacacacaaacaatacacttc 7451484  T
Q  323 catgtttccctccttccatactaatacctttcacgctagccattgaataaaatattactcccattactacgtgcttagtttaatatcagtggctatatca 422  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  7451483 catgtttccctccttccatactaatccctttcacgctagccattgaataaaatattactcccattaccacgtgcttaatttaatatcagtggctatatca 7451384  T
Q  423 attttttaagtaagtgtatatgcatggctgtgaactgaa 461  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  7451383 attttttaagtaagtgtatatgcatggttgtgaactgaa 7451345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 18593674 - 18593471
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  18593674 aatcggcaaatattattaaacgtcatccccgcaagatgcaaggtatggacgaaacaagataaatatggtgccgcatatagacggtacaccataaccacct 18593575  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 200  Q
    ||||||||  ||  |||| || || ||||||||||||||||||||||||| |||||        ||| |||||||||||||| ||||||||||| |||||    
T  18593574 aaaaacacccctgaagataaacccgccaaaacacatcaccacctaacacaaactcc-aaaaaaacaagcactgtaaacacggtatccaccaccgcccatc 18593476  T
Q  201 gtcac 205  Q
    |||||    
T  18593475 gtcac 18593471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 7453020 - 7452895
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    ||||||||||||||||||||| ||||||  |||||||  ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  7453020 aatcggcaaatattattaaacatcatccatgcaagacgcaaggtatggacaaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 7452921  T
Q  101 aaaaacacatctagagattaatccac 126  Q
    |||||||||||| |||||||| ||||    
T  7452920 aaaaacacatctggagattaacccac 7452895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 29087903 - 29087707
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||| |||||||||||||||||||||| |||||       |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29087903 aatcggaaaatattattaaacgtcatccctgcaag-------gtatggacgaaacaagatacaaatggtgccgcatatagacggtacatcataaccacct 29087811  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 200  Q
    |||||||   ||  |||| || |||||||||||||||| ||||||| |||||||||        ||| |||||||||||||| || |||||||| |||||    
T  29087810 aaaaacaaccctgaagataaacccaccaaaacacatcagcacctaaaacagactcc-aaaaaaacaagcactgtaaacacggtattcaccaccgcccatc 29087712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 34378531 - 34378386
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    ||||| |||||||||||||||| |||| |||||||||  |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| ||    
T  34378531 aatcgacaaatattattaaacgccatctccgcaagacgcaaggcatggacgagacgagatacaaatggtgccgcatatagacggtacaccataaccatct 34378432  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaa 146  Q
    ||||||||  ||  |||| || |||| |||||||||||||||||||    
T  34378431 aaaaacacccctgaagataaacccacaaaaacacatcaccacctaa 34378386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 5656749 - 5656897
Alignment:
Q  8 aaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 107  Q
    ||||||||||||||| |||| |||||||||  |||||||| |||||| |||||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  5656749 aaatattattaaacgccatcaccgcaagacgcaaggtatgaacgaaataagatacaaatgatgccgcatatagacggtacatgataaccacctaaaaaca 5656848  T
Q  108 catctagagattaatccaccaaaacacatcaccacctaacacagactcc 156  Q
    || ||  |||| |||||||||||||||  |||||||||| || ||||||    
T  5656849 caccttaagataaatccaccaaaacacgccaccacctaaaactgactcc 5656897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 7161663 - 7161818
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||||||||||||||||||||| ||||| ||||||  ||| ||||||||||| ||||||||||| |||  |||||||||||||||||||||| |||||    
T  7161663 aatcggcaaatattattaaacgtcttccccacaagacgcaagatatggacgaaataagatacaaatagtgtagcatatagacggtacaccataatcacct 7161762  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 156  Q
    ||||||||  ||  | || || ||||||||||||||||| |||||| |||||||||    
T  7161763 aaaaacacccctgaatataaacccaccaaaacacatcactacctaaaacagactcc 7161818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 698799 - 698692
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||| ||||||||||||||||| |||| | ||||||| ||||||||||| |||| | |||||||||||||||||||||||||||||||| ||||||||||    
T  698799 aatcagcaaatattattaaacgacatctctgcaagacgtaaggtatggatgaaatatgatacaaatggtgccgcatatagacggtacactataaccacct 698700  T
Q  101 aaaaacac 108  Q
    ||||||||    
T  698699 aaaaacac 698692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 18313303 - 18313393
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacacca 91  Q
    |||||| ||||||||||||||||||| || | |||||  |||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  18313303 aatcggtaaatattattaaacgtcattcctgtaagacgcaaggtatggatgaaacaagatgcaaatggtgccgcatatagacggtacacca 18313393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 18255099 - 18255192
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa 94  Q
    |||||||||||||| |||||||| ||||||| ||||   | ||||| ||||||||||||||||||| ||||||||||||||||||||| |||||    
T  18255099 aatcggcaaatattgttaaacgttatccccgtaagatgcagggtatagacgaaacaagatacaaatagtgccgcatatagacggtacatcataa 18255192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 41250893 - 41250944
Alignment:
Q  52 aaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaa 103  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  41250893 aaacaagatataaatggtgccgcatatagacggtacaccataaccacgtaaa 41250944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 18313406 - 18313448
Alignment:
Q  114 gagattaatccaccaaaacacatcaccacctaacacagactcc 156  Q
    ||||| || |||||||||||||||||||||||| |||||||||    
T  18313406 gagataaacccaccaaaacacatcaccacctaaaacagactcc 18313448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 34378359 - 34378326
Alignment:
Q  172 tgtaaacacggcatccaccaccgtccatcgtcac 205  Q
    ||||||||||| ||||||||||||||||||||||    
T  34378359 tgtaaacacggtatccaccaccgtccatcgtcac 34378326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 8e-62; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 30685573 - 30685777
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30685573 aatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacct 30685672  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 200  Q
    ||||||||  ||  |||| || |||||||||||||||||||||||| |||||||||        ||| || ||||||||||| ||||||||||| |||||    
T  30685673 aaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactccaacaaaaacaagcaatgtaaacacggtatccaccaccgcccatc 30685772  T
Q  201 gtcac 205  Q
     ||||    
T  30685773 ttcac 30685777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 24449584 - 24449783
Alignment:
Q  5 ggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaa 104  Q
    |||||||||||||||||| |||||| ||||||   |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  24449584 ggcaaatattattaaacgccatccc-gcaagatgcaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacataaaa 24449682  T
Q  105 acacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatcgtca 204  Q
    ||||  |||||||| ||  |||||||||||||||||||||||   |||||||        ||| |||||||||||||| ||||||||||| |||||||||    
T  24449683 acacccctagagataaacacaccaaaacacatcaccacctaaagtagactccaaaaaaaacaagcactgtaaacacggtatccaccaccgcccatcgtca 24449782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 40216155 - 40216308
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||| ||||||||||||||||||||||| ||||||||   || |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  40216155 aatcagcaaatattattaaacgtcatcctcgcaagacgccagatatggacgaatcaagatacaaatggtgccgcatatagacggtacatcataaccacct 40216254  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactc 155  Q
    |||||||||||| |||||||| ||||| |||||||||| |||||||||| |||||    
T  40216255 aaaaacacatctggagattaacccaccgaaacacatca-cacctaacacggactc 40216308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 7002619 - 7002476
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||||||||||||||||||||||||| ||||| |  ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |    
T  7002619 aatcggcaaatattattaaacgtcatcctcgcaaaatgtaaggtatggacgaaacaagatacaaaaggtgccgcatataaacggtacaccataaccactt 7002520  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaa 146  Q
    |||||  |  |||||||| || ||||||||||||||||||||||||    
T  7002519 aaaaaacc--ctagagataaacccaccaaaacacatcaccacctaa 7002476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 46814121 - 46814266
Alignment:
Q  8 aaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 107  Q
    ||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||      
T  46814121 aaatattattaaacgccatcctcgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccaccaaacaaag 46814220  T
Q  108 catctagagattaatccaccaaaacacatcaccacctaacacagac 153  Q
    |  ||  |||| || | |||||||||||||||||||||| ||||||    
T  46814221 cccctgaagataaacctaccaaaacacatcaccacctaagacagac 46814266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 5389077 - 5389275
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||| ||||||||||||||| |||||||     ||  ||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||    
T  5389077 aatcggaaaatattattaaacgccatcccc-----acgcaaggtatggacgaaataagatacaaatggtgccgcatatagacggcacactataaccacct 5389171  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 200  Q
    ||||||||  |||||||| || | |||||||||||||||||||||| ||| |||||        ||| ||| |||||||||| ||||||||||| |||||    
T  5389172 aaaaacacccctagagataaaccaaccaaaacacatcaccacctaaaacaaactcc-caaaaaacaagcaccgtaaacacggtatccaccaccgcccatc 5389270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 24684142 - 24684344
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||||||||||||||| | |||||||| ||||||   |||||||| || ||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  24684142 aatcggcaaatattattatatgtcatccctgcaagatgcaaggtatgaac-aaacaagatacaaatggtgccacatatagacggtacaccataatcacct 24684240  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 200  Q
    ||||||||  ||  |||| || |||||||||||||||||||||||| ||| |||||        ||||| |||||||||||  ||||||||||| |||||    
T  24684241 aaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacaaactcc-aaaaaaacaaactctgtaaacacgatatccaccaccgcccatc 24684339  T
Q  201 gtcac 205  Q
    |||||    
T  24684340 gtcac 24684344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 6804969 - 6804825
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||| |||||||||||||||  |||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6804969 aatcggtaaatattattaaacgctatccccgcaagacgcaaggtatggacgaaa-aagatacaaatggtgccgcatatagacggtacaccataaccacct 6804871  T
Q  101 aaaaacacatctagagattaat-ccaccaaaacacatcaccaccta 145  Q
    ||||| | | |  |||  |||| |||||||||||||||||||||||    
T  6804870 aaaaaaaaaccccgaggataatcccaccaaaacacatcaccaccta 6804825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 31584689 - 31584833
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||||||||||||||||||  ||||| ||||||||  |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31584689 aatcggcaaatattattaaacaccatcctcgcaagacgcaaggtatg-acgaaacaagatacaaatggtgccgcatatagacgatacaccataaccacct 31584787  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaa 146  Q
    ||||||||  ||  |||| || |||||||||||  |||||||||||    
T  31584788 aaaaacacccctgaagataaacccaccaaaacatgtcaccacctaa 31584833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 41920889 - 41920782
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    ||||| ||||||||||||||||||||| ||||||||| |||||||||||||||| || |||||||| |||| |||||||||||||||||| |||||||||    
T  41920889 aatcgacaaatattattaaacgtcatctccgcaagacgtaaggtatggacgaaataaaatacaaattgtgctgcatatagacggtacaccgtaaccacct 41920790  T
Q  101 aaaaacac 108  Q
    ||||||||    
T  41920789 aaaaacac 41920782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 5459587 - 5459389
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||| |||||||||||||||||     ||||||| ||  |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  5459587 aatcagcaaatattattaaacg-----cccgcaatacgcaaggtatggacgaagcaacatacaaatggtgccgcatatagacggtacaccataaccacct 5459493  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 200  Q
    ||||| ||  ||  |||| ||  |||||||||||||||| || ||| ||| |||||        ||| |||||||||||||| ||||||||||| |||||    
T  5459492 aaaaatacccctgaagataaactcaccaaaacacatcactacttaaaacaaactcc-aaaaaaacaatcactgtaaacacggtatccaccaccgcccatc 5459394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 14320755 - 14320658
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 98  Q
    |||||||||||||||||||||||||||||| |||||   ||||||||||| |||| | |||||||||||| |||||||||||||||||||||||||||    
T  14320755 aatcggcaaatattattaaacgtcatccccacaagatgcaaggtatggacaaaaccaaatacaaatggtgtcgcatatagacggtacaccataaccac 14320658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 27031496 - 27031585
Alignment:
Q  7 caaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 96  Q
    |||||||||||||||||||||| ||||||||  ||| |||||||| ||||| ||| ||||||||||||||||| ||||||||||||||||    
T  27031496 caaatattattaaacgtcatcctcgcaagacgcaagatatggacggaacaatatataaatggtgccgcatatatacggtacaccataacc 27031585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 24659351 - 24659217
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||| ||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  24659351 aatcagcaaatattattaaacgtcatccccgcaagacg-----------cgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacca 24659263  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaa 146  Q
    || ||  |  ||  |||| || |||||||||||||| |||||||||    
T  24659262 aacaaagcccctgaagataaacccaccaaaacacataaccacctaa 24659217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 52 - 156
Target Start/End: Original strand, 46692519 - 46692624
Alignment:
Q  52 aaacaagatacaaatggtgccgcatatagacggtacaccataaccacct-aaaaacacatctagagattaatccaccaaaacacatcaccacctaacaca 150  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||  ||  |||| || || ||||||||||||||||||||| |||    
T  46692519 aaacaagataaaaatggtgccgcataaagacggtacaccataaccacctaaaaaacacccctgaagataaaccctccaaaacacatcaccacctaaaaca 46692618  T
Q  151 gactcc 156  Q
     |||||    
T  46692619 aactcc 46692624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 8e-59; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 20138858 - 20138655
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||| ||||||||||||||| ||||||||||||||  || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20138858 aatcggtaaatattattaaacgccatccccgcaagacgcaaagtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacct 20138759  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 200  Q
    ||||||||   | ||||| || |||||||||||||||||||||||| |||||||||        ||| |||||||||||||| |||||||||||||||||    
T  20138758 aaaaacacccatggagataaacccaccaaaacacatcaccacctaaaacagactcc-aaaaaatcaagcactgtaaacacggtatccaccaccgtccatc 20138660  T
Q  201 gtcac 205  Q
    |||||    
T  20138659 gtcac 20138655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 12897925 - 12898080
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    ||||||||||||||||||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12897925 aatcggcaaatattattaaacgtcatccccgcaagatgcaagatatggacgaaacaagatacaaatggtgccgcatatagacggtacaccattaccacct 12898024  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 156  Q
    ||||||||  ||  |||| || |||||||||||||||||||||||| ||| |||||    
T  12898025 aaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacaaactcc 12898080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 31207011 - 31207165
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||||||||||||||||||| ||||| ||||||||  |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  31207011 aatcggcaaatattattaaacgccatcctcgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgtatataaacggtacaccataaccacct 31207110  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactc 155  Q
    ||||||||  ||  |||| ||  ||||||||||||||||||||||| ||||||||    
T  31207111 aaaaacactcctgaagataaactcaccaaaacacatcaccacctaaaacagactc 31207165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 36631254 - 36631055
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||| ||||||||||| ||| |||||| |||||||  |||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36631254 aatcggaaaatattattatacgccatccctgcaagacgcaaggtatgaa-gaaacaagatacaaatggtgccgcatatagacggtacaccataatcacct 36631156  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 200  Q
    ||||||||  ||  |||| || |||||||||||||||||||||||| |||||||||        |||||||||||||||||| ||||||||||| |||||    
T  36631155 aaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactcc-aaaaaaacaaacactgtaaacacggtatccaccaccgcccatc 36631057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 16457128 - 16457328
Alignment:
Q  5 ggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaa 104  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16457128 ggcaaatattattaaacgtcatccctgcaagacgtaaggtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataaccacctaaaa 16457227  T
Q  105 acacatctagagattaatc-caccaaaacacatcaccacct-aacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatcgt 202  Q
    |  |  || |||  ||||| ||||||||||||||||||||| || | |||||          ||| |||||||||||||| |||||||||||||||||||    
T  16457228 aatc--cttgaggataatcgcaccaaaacacatcaccacctaaaaaaagactaaaaaaaaaacaagcactgtaaacacggtatccaccaccgtccatcgt 16457325  T
Q  203 cac 205  Q
    |||    
T  16457326 cac 16457328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 32065934 - 32066088
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||||||||||||||||||| |||| ||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32065934 aatcggcaaatattattaaacgccatcaccgcaagatgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtaca-cataaccacct 32066032  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 156  Q
    ||||||||  ||  |||| || |||||||||||||||||||||||| ||| |||||    
T  32066033 aaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacaaactcc 32066088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 22774053 - 22773908
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||||||||||||||||||| ||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  22774053 aatcggcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaactagatacaaatggtgccgcatatagacggtacaccataaccatct 22773954  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaa 146  Q
    ||||||||   |  |||| || ||||||||||| ||||||||||||    
T  22773953 aaaaacaccagtgaagataaacccaccaaaacatatcaccacctaa 22773908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 37986508 - 37986649
Alignment:
Q  5 ggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaa 104  Q
    |||||||||||||||| ||||||||||||||||  |||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37986508 ggcaaatattattaaatgtcatccccgcaagacgcaaggcacggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacctaaaa 37986607  T
Q  105 acacatctagagattaatccaccaaaacacatcaccacctaa 146  Q
    ||||  ||| |||| || |||  |||||||||||||||||||    
T  37986608 acacccctaaagataaacccattaaaacacatcaccacctaa 37986649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 24995044 - 24995247
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||| |||||||||||| |||| |||||||| |||||  ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  24995044 aatcagcaaatattattgaacgccatccccgtaagacgcaaggtatggacgaaacaagatacaaatggtgccgcttatagacagtacaccataaccacct 24995143  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 200  Q
    ||||||||  ||  |||| || |||||||||||  ||||||||||| |||  ||||        ||| || ||||||||||| ||||||||||| |||||    
T  24995144 aaaaacacccctgaagataaacccaccaaaacatgtcaccacctaaaacaatctcc-aaaaaaacaagcattgtaaacacggtatccaccaccgcccatc 24995242  T
Q  201 gtcac 205  Q
    |||||    
T  24995243 gtcac 24995247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 27889239 - 27889125
Alignment:
Q  40 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctagagattaatccaccaaaacacatcac 139  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  || ||||| || |||||||||||||||||    
T  27889239 aaggtattgacgaaacaagatacaaatggtgccgcatatagactgtacaccataaccacctaaaaacacccctggagataaacccaccaaaacacatcac 27889140  T
Q  140 cacctaacacagact 154  Q
    ||||||| |||||||    
T  27889139 cacctaaaacagact 27889125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 27947897 - 27947783
Alignment:
Q  40 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctagagattaatccaccaaaacacatcac 139  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  || ||||| || |||||||||||||||||    
T  27947897 aaggtattgacgaaacaagatacaaatggtgccgcatatagactgtacaccataaccacctaaaaacacccctggagataaacccaccaaaacacatcac 27947798  T
Q  140 cacctaacacagact 154  Q
    ||||||| |||||||    
T  27947797 cacctaaaacagact 27947783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 15821026 - 15821177
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||| |||||||||||||||||||||||  |||||||  |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||     
T  15821026 aatcagcaaatattattaaacgtcatcct-gcaagacgcaaggtatggacggaacaagatacaaatggtgccgcatatagacggtataccataaccacca 15821124  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagac 153  Q
    || || ||  ||  |||| || |||||||||||||||||||||||| ||||||    
T  15821125 aataaaacccctgaagataaaaccaccaaaacacatcaccacctaagacagac 15821177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 9519938 - 9519793
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    ||||| |||||||||||||||  ||||||  ||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  9519938 aatcgacaaatattattaaacaccatccctacaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacagtacatcataaccacct 9519839  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaa 146  Q
    ||||||||  ||   ||| || |||||||||||| |||||||||||    
T  9519838 aaaaacacccctgatgataaacccaccaaaacacgtcaccacctaa 9519793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 2 - 155
Target Start/End: Complemental strand, 35821685 - 35821534
Alignment:
Q  2 atcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccaccta 101  Q
    ||||||||||||||||||||| |||| |||||||||  |||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||    
T  35821685 atcggcaaatattattaaacgccatctccgcaagacgcaagg-atggacgaaacatgatacaaatgatgccgcatatagacggtacaccataaccactta 35821587  T
Q  102 aaaacacatctagagattaatc-caccaaaacacatcaccacctaacacagactc 155  Q
    |||| || ||| |||  ||||| |||||||  |||||||||||||| ||||||||    
T  35821586 aaaa-acctct-gaggataatctcaccaaactacatcaccacctaaaacagactc 35821534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 35815896 - 35815988
Alignment:
Q  4 cggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 96  Q
    ||||||||||||||||||| ||||| ||||| ||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35815896 cggcaaatattattaaacgccatcctcgcaaaacgcaaggtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataacc 35815988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 3584170 - 3584071
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaa-gatacaaatggtgccgcatatagacggtacaccataaccacc 99  Q
    |||| ||||||||||||||||| ||||||| ||||||   ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3584170 aatcagcaaatattattaaacgccatccccacaagacgcgaggtatgaacgaaacaaagatacaaatggtgccgcatatagacggtacaccataaccacc 3584071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 41893052 - 41893206
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaaga---cataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacca 97  Q
    ||||| |||||||||||||||||| |||||  ||||   || |||||||| |||||| || |||||||||||| ||||||||||||||||||||||||||    
T  41893052 aatcgacaaatattattaaacgtcgtccccataagatgtcacaaggtatgaacgaaaaaa-atacaaatggtgtcgcatatagacggtacaccataacca 41893150  T
Q  98 cctaaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagact 154  Q
    |||||||| |   | || ||| |||||||||||||||||||| |||||| |||||||    
T  41893151 cctaaaaaaaacccgag-gataaatccaccaaaacacatcactacctaaaacagact 41893206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 38577441 - 38577580
Alignment:
Q  7 caaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaac 106  Q
    ||||||||||||||||||||  ||||||||  ||| ||||| ||||||||| ||||||||| ||||||||||||||||||||  ||||| ||| || ||     
T  38577441 caaatattattaaacgtcatttccgcaagatgtaatgtatgaacgaaacaatatacaaatgatgccgcatatagacggtacaaaataactaccaaacaaa 38577540  T
Q  107 acatctagagattaatccaccaaaacacatcaccacctaa 146  Q
    | |  |  |||| || ||||||||||||||||||||||||    
T  38577541 atacatgaagataaacccaccaaaacacatcaccacctaa 38577580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 13538417 - 13538324
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa 94  Q
    |||| ||||||||||||||||| |||| || ||||||  ||||||||||||||| || ||||||||||| |||||||||||||||||| |||||    
T  13538417 aatcagcaaatattattaaacgccatctccacaagacgcaaggtatggacgaaagaatatacaaatggtaccgcatatagacggtacatcataa 13538324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 13686057 - 13686150
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa 94  Q
    |||| ||||||||||||||||| |||| || ||||||  ||||||||||||||| || ||||||||||| |||||||||||||||||| |||||    
T  13686057 aatcagcaaatattattaaacgccatctccacaagacgcaaggtatggacgaaagaatatacaaatggtaccgcatatagacggtacatcataa 13686150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 9659534 - 9659474
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagata 61  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  9659534 aatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagata 9659474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 34388711 - 34388811
Alignment:
Q  56 aagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactc 155  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||   |  |||| || ||| |||||||||||||||||||| ||| ||||    
T  34388711 aagatacaaatagtgctgcatatagacggtacaccataaccacctaaaaacacccgtgaagataaacccagcaaaacacatcaccacctaaaacaaactc 34388810  T
Q  156 c 156  Q
    |    
T  34388811 c 34388811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34866309 - 34866345
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagac 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  34866309 aatcggcaaatattattaaacgtcatccccgcaagac 34866345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 10837941 - 10837984
Alignment:
Q  56 aagatacaaatggtgccgcatatagacggtacaccataaccacc 99  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||    
T  10837941 aagatgcaaatcgtgccgcatatagacggtacaccataaccacc 10837984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 9519764 - 9519728
Alignment:
Q  169 cactgtaaacacggcatccaccaccgtccatcgtcac 205  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  9519764 cactgtaaacacggtatccaccaccgcccatcgtcac 9519728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 8e-59; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 44353213 - 44353416
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||| ||||||||||||||| ||||||||||||||  || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44353213 aatcggtaaatattattaaacgccatccccgcaagacgcaaagtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacct 44353312  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 200  Q
    ||||||||   | ||||| || |||||||||||||||||||||||| |||||||||        ||| |||||||||||||| |||||||||||||||||    
T  44353313 aaaaacacccatggagataaacccaccaaaacacatcaccacctaaaacagactcc-aaaaaatcaagcactgtaaacacggtatccaccaccgtccatc 44353411  T
Q  201 gtcac 205  Q
    |||||    
T  44353412 gtcac 44353416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 31971784 - 31971987
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31971784 aatcggcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 31971883  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 200  Q
    ||||||||  ||  |||| || |||||||||||||| ||||||||| ||| |||||        ||| |||||||||||||| ||| ||||||| |||||    
T  31971884 aaaaacacccctgaagataaacccaccaaaacacataaccacctaaaacaaactcc-aaaaaaacaagcactgtaaacacggtatcaaccaccgcccatc 31971982  T
Q  201 gtcac 205  Q
    |||||    
T  31971983 gtcac 31971987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 5859932 - 5860085
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||||||||||||||||||||||||||||||||||  | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5859932 aatcggcaaatattattaaacgtcatccccgcaagacgcatgatatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 5860031  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagact 154  Q
    ||||||||  ||| |||| |  |||||||||||||||||||||||| |||||||    
T  5860032 aaaaacacccctaaagataatcccaccaaaacacatcaccacctaaaacagact 5860085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 25161240 - 25161088
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    ||||||||||||||||||||||||||||||| ||||  ||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  25161240 aatcggcaaatattattaaacgtcatccccgtaagatttaaggtatgaacgaaacaagatgcaaatggtgccgtatatagacggtacaccataaccacct 25161141  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagact 154  Q
    ||||||||  || ||||| || |||||||||||||||||||||||| |||||||    
T  25161140 aaaaacac-cctggagataaacccaccaaaacacatcaccacctaaaacagact 25161088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 47325534 - 47325678
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||||||||||||||||||||||||| || |||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47325534 aatcggcaaatattattaaacgtcatcctcgtaagacgcaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacct 47325633  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaa 146  Q
    |||||||| |||  |||| || ||||||||||||||||||||||||    
T  47325634 aaaaacac-tctgaagataaacccaccaaaacacatcaccacctaa 47325678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 10244612 - 10244457
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||||||||||||||||||  |||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10244612 aatcggcaaatattattaaactccatctccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacagtacaccataaccacct 10244513  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 156  Q
    ||||||||  ||  |||| | ||||| ||||||||||||||||||| ||| |||||    
T  10244512 aaaaacacccctgaagataagtccacgaaaacacatcaccacctaaaacaaactcc 10244457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 33434480 - 33434625
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||||||||||||||||||| ||||||||||| ||  |||||||||||||| ||||||||||||||| | | ||||||||||||||||||||||||||    
T  33434480 aatcggcaaatattattaaacgccatccccgcaatacgcaaggtatggacgaagcaagatacaaatggttctgtatatagacggtacaccataaccacct 33434579  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaa 146  Q
    ||||||||  || || || || ||||||||||||||||||||||||    
T  33434580 aaaaacacccctggaaataaacccaccaaaacacatcaccacctaa 33434625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 2 - 156
Target Start/End: Original strand, 41089396 - 41089547
Alignment:
Q  2 atcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccaccta 101  Q
    ||||||||||||||||||| | |||| | ||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41089396 atcggcaaatattattaaatgccatctctgcaagaca--aggtatggacgaaacaagatacaa-tggtgccgcatatagacggtacaccataaccaccta 41089492  T
Q  102 aaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 156  Q
    |||||||   |  |||| ||||||||||||||||||| ||||||| |||||||||    
T  41089493 aaaacacccatgaagataaatccaccaaaacacatcatcacctaaaacagactcc 41089547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 3419048 - 3419197
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    ||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| | ||||||  ||||||||||||||||||||||||    
T  3419048 aatcgacaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaacgttgccgc--atagacggtacaccataaccacct 3419145  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacaga 152  Q
    ||||||||  ||  |||| ||  |||||||||||| |||||||||| |||||    
T  3419146 aaaaacactcctgaagataaactcaccaaaacacaacaccacctaaaacaga 3419197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 2 - 205
Target Start/End: Complemental strand, 3867545 - 3867344
Alignment:
Q  2 atcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccaccta 101  Q
    |||||||||||||||||||| ||||||| ||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || ||    
T  3867545 atcggcaaatattattaaacttcatccc-gcaagacgtaaggtattgacgaaacaagatacaaatggtgccacatatagacggtacaccataacaacata 3867447  T
Q  102 aaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaac-actgtaaacacggcatccaccaccgtccatc 200  Q
    |||||||  ||  |||| ||  |||||||||||||||||||| || ||| |||||         |||| ||||||||||||  |||||||||||||||||    
T  3867446 aaaacacccctgaagataaactcaccaaaacacatcaccacccaaaacaaactccttcacaa--aaacaactgtaaacacgatatccaccaccgtccatc 3867349  T
Q  201 gtcac 205  Q
    |||||    
T  3867348 gtcac 3867344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 40 - 156
Target Start/End: Complemental strand, 38306653 - 38306537
Alignment:
Q  40 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctagagattaatccaccaaaacacatcac 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||| || | |||||||||||||||    
T  38306653 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccctaaagataaaccaaccaaaacacatcac 38306554  T
Q  140 cacctaacacagactcc 156  Q
    ||||||| ||| |||||    
T  38306553 cacctaaaacaaactcc 38306537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 3 - 156
Target Start/End: Complemental strand, 37795426 - 37795273
Alignment:
Q  3 tcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaa 102  Q
    |||||||||||||||||||||| ||||| ||||||  ||||||||||||||||||||||||||||||| |||   || ||||||||||||||||||||||    
T  37795426 tcggcaaatattattaaacgtcgtccccacaagacgcaaggtatggacgaaacaagatacaaatggtgtcgcgattaaacggtacaccataaccacctaa 37795327  T
Q  103 aaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 156  Q
    ||||||   |  |||| || |||| |||||| |||||||||||| |||||||||    
T  37795326 aaacacccatgaagataaacccacaaaaacatatcaccacctaaaacagactcc 37795273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 3 - 156
Target Start/End: Complemental strand, 37795754 - 37795601
Alignment:
Q  3 tcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaa 102  Q
    |||||||||||||||||||||| ||||| ||||||  ||||||||||||||||||||||||||||||| |||   || ||||||||||||||||||||||    
T  37795754 tcggcaaatattattaaacgtcgtccccacaagacgcaaggtatggacgaaacaagatacaaatggtgtcgcgattaaacggtacaccataaccacctaa 37795655  T
Q  103 aaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 156  Q
    ||||||   |  |||| || |||| |||||| |||||||||||| |||||||||    
T  37795654 aaacacccatgaagataaacccacaaaaacatatcaccacctaaaacagactcc 37795601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 34391614 - 34391469
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||| |||||||||||||||||||||||||||| |||  | |||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||     
T  34391614 aatcagcaaatattattaaacgtcatccccgcaggacgcagggtatggacgaaacaagatacaaataatgccgcatatagacgatacaccataaccacca 34391515  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaa 146  Q
    || ||  |  ||  |||| || ||||||||||||||||||||||||    
T  34391514 aacaaagcccctgaagataaacccaccaaaacacatcaccacctaa 34391469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 40726140 - 40726347
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagataca--------------aatggtgccgcatatagacggta 86  Q
    |||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||              |||| |||  |||||||||||||    
T  40726140 aatcggcaaatattattaaatgtcatccccgcaagacgcaaggtatggacgaaacaagatacacgaaacaaaatacaaatgatgctacatatagacggta 40726239  T
Q  87 caccataaccacctaaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatc 186  Q
    ||||||||||||||||||||||  || ||||| || |||||||||||||| ||||||||| |||||||||        ||| ||| |||||||||| |||    
T  40726240 caccataaccacctaaaaacacccctggagataaacccaccaaaacacattaccacctaaaacagactccaaaaaaatcaagcacggtaaacacggtatc 40726339  T
Q  187 caccaccg 194  Q
    ||||||||    
T  40726340 caccaccg 40726347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 42454383 - 42454487
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||| |||||||||||||||| |||||||||||||||  ||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  42454383 aatcagcaaatattattaaacatcatccccgcaagacgcaagatatagacgaaacaaggtacaaatggtgccgcatatagacagtacaccataaccacct 42454482  T
Q  101 aaaaa 105  Q
    |||||    
T  42454483 aaaaa 42454487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 6585318 - 6585179
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||| ||||||||||||||||| |||||||||||||   |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  6585318 aatcagcaaatattattaaacgccatccccgcaagatgcaaggaatggacgaaacaagatacaaatggtgccacatatagacggtacaccataaccacca 6585219  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcacc 140  Q
    || || ||  ||  |||| || ||||| ||||||||||||    
T  6585218 aacaaaacccctgaagataaagccacctaaacacatcacc 6585179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 3419321 - 3419456
Alignment:
Q  15 attaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctag 114  Q
    |||||||| ||||||||||||||  |||||||||||||||||||||||||| | ||||||  ||||||||||||||||||||||||||||||||  ||      
T  3419321 attaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaacgttgccgc--atagacggtacaccataaccacctaaaaacactcctga 3419418  T
Q  115 agattaatccaccaaaacacatcaccacctaacacaga 152  Q
    |||| ||  |||||||||||| |||||||||| |||||    
T  3419419 agataaactcaccaaaacacaacaccacctaaaacaga 3419456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 6 - 155
Target Start/End: Complemental strand, 43482331 - 43482183
Alignment:
Q  6 gcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaa 105  Q
    |||||||||||||||||||||||||| | |||  ||||||||||||||| ||||||||||| |||| ||||| ||||||||||||| |||||||||||||    
T  43482331 gcaaatattattaaacgtcatccccgta-gacgcaaggtatggacgaaataagatacaaatagtgctgcatacagacggtacaccacaaccacctaaaaa 43482233  T
Q  106 cacatctagagattaatccaccaaaacacatcaccacctaacacagactc 155  Q
    ||    | ||||| || |||| |||||||| |||||||||| ||||||||    
T  43482232 catccattgagataaacccacaaaaacacaacaccacctaaaacagactc 43482183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 48161690 - 48161790
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||| |||||||||||||||||||||||| |||||||| ||| |||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||    
T  48161690 aatcagcaaatattattaaacgtcatccctgcaagacacaagatatggacgaa-caaaatacaaatagtgccgcatatagacggcacaccataaccacct 48161788  T
Q  101 aa 102  Q
    ||    
T  48161789 aa 48161790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 11378772 - 11378866
Alignment:
Q  3 tcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 98  Q
    |||||||||||||||||||| || |||||||||||  |||||||||||| || |||||||| ||| ||||||||||| ||||||||||||||||||    
T  11378772 tcggcaaatattattaaacgccaaccccgcaagacgcaaggtatggacg-aataagatacagatgatgccgcatataaacggtacaccataaccac 11378866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 35745481 - 35745555
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgca 75  Q
    |||| |||||||||||||||||||||| ||| || ||  ||||||||||||||||||||||||||||||| ||||    
T  35745481 aatcagcaaatattattaaacgtcatctccgtaaaacgcaaggtatggacgaaacaagatacaaatggtgtcgca 35745555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 47236130 - 47235926
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||| ||||||||||||||||| |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  47236130 aatcagcaaatattattaaacgccatccctgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtataccataaccatct 47236031  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 200  Q
    ||||||||  || ||||| || ||||||||| |||||||||||||| |||||||          ||| |||||||||||||| |||||||||||||||||    
T  47236030 aaaaacacccctggagataaacccaccaaaatacatcaccacctaaaacagacttaaaaaaaaacaagcactgtaaacacggtatccaccaccgtccatc 47235931  T
Q  201 gtcac 205  Q
    |||||    
T  47235930 gtcac 47235926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 2392152 - 2392297
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2392152 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 2392251  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaa 146  Q
    ||||||||  ||  | || || |||||||||||||||||| |||||    
T  2392252 aaaaacacccctgaaaataaacccaccaaaacacatcaccgcctaa 2392297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 2393915 - 2394060
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2393915 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 2394014  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaa 146  Q
    ||||||||  ||  | || || |||||||||||||||||| |||||    
T  2394015 aaaaacacccctgaaaataaacccaccaaaacacatcaccgcctaa 2394060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 34475407 - 34475609
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||||| ||||||||||||||||||||||||||||  | |||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  34475407 aatcggcacatattattaaacgtcatccccgcaagacgcagggtatgaacgaaacaagatacaaatggtgccccatatagacggtataccataaccacct 34475506  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 200  Q
    || |||||  || ||||| ||  ||||||||||||||||||||||| |||||||||        ||| || ||||||||||| ||||||||||| |||||    
T  34475507 aagaacacccctggagataaactcaccaaaacacatcaccacctaaaacagactcc--aaaaaacaagcaatgtaaacacggtatccaccaccgcccatc 34475604  T
Q  201 gtcac 205  Q
    |||||    
T  34475605 gtcac 34475609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 45164285 - 45164131
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    ||||||||||||||||||||| | ||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45164285 aatcggcaaatattattaaacattatccccgcaagatgcaaggtatggactaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 45164186  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 156  Q
    ||||||||  || ||||| || |||||||||||||||||||||||| | |||||||    
T  45164185 aaaaacac-cctggagataaacccaccaaaacacatcaccacctaaaatagactcc 45164131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 19176938 - 19176783
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||||||||||||||||||||||| || |||||||  || |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  19176938 aatcggcaaatattattaaacgtcattcctgcaagacgcaaagtatggacgaaacatgatacaaatggtgccgcatatagacggtacaccataacgacct 19176839  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 156  Q
    ||||| ||  ||  |||  || |||||||||||||| ||||||||| |||||||||    
T  19176838 aaaaatacccctgaagacaaacccaccaaaacacataaccacctaaaacagactcc 19176783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 31483312 - 31483157
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||||||||||||||||||  ||||||| ||||||  |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31483312 aatcggcaaatattattaaacaccatccccacaagacgcaaggtatgaacaaaacaagatacaaatggtgctgcatatagacggtacaccataaccacct 31483213  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 156  Q
    ||||||||  || ||||| ||  ||||||||||||||||| ||||| ||| |||||    
T  31483212 aaaaacacccctggagataaactcaccaaaacacatcaccgcctaaaacaaactcc 31483157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 21343779 - 21343678
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21343779 aatcgacaaatattattaaacgtcatcccggcaagacacaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacatcataaccacct 21343680  T
Q  101 aa 102  Q
    ||    
T  21343679 aa 21343678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 53248332 - 53248129
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    ||||| ||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||| |||||||||   |||||||||||||| ||    
T  53248332 aatcgacaaatattattaaacgtcatccccgcaaggcgtaaggtatggacaaaacaagatacaaatggtgtcgcatataggttgtacaccataaccatct 53248233  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 200  Q
    |||||||   ||  |||| |  |||| ||||||||||||||||||| |||||||||        ||| |||||||||||||| | ||||||||| |||||    
T  53248232 aaaaacaaccctgaagataaccccacaaaaacacatcaccacctaaaacagactcc-aaaaaaacaagcactgtaaacacggtaaccaccaccgcccatc 53248134  T
Q  201 gtcac 205  Q
    |||||    
T  53248133 gtcac 53248129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 30352110 - 30352230
Alignment:
Q  23 tcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctagagattaat 122  Q
    |||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||  |||| |      
T  30352110 tcattcccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagaaggtacaccataaccacctaaaaacacccctgaagataagc 30352209  T
Q  123 ccaccaaaacacatcaccacc 143  Q
    |||||||||||||||||||||    
T  30352210 ccaccaaaacacatcaccacc 30352230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 17551382 - 17551244
Alignment:
Q  8 aaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 107  Q
    |||||||||||||||| ||||| ||||||   | |||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17551382 aaatattattaaacgttatccctgcaagatgcagggtatgaacgaaacaaaatacaaatggtgccgcatatagactgtacaccataaccacctaaaaaca 17551283  T
Q  108 catctagagattaatccaccaaaacacatcaccacctaa 146  Q
    | |||  | |  || ||||||||||||||||||||||||    
T  17551282 cctctgaaaaaaaacccaccaaaacacatcaccacctaa 17551244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 153
Target Start/End: Original strand, 40023224 - 40023370
Alignment:
Q  7 caaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaac 106  Q
    ||||||||||||||| |||||||||||||||  |  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||     
T  40023224 caaatattattaaacatcatccccgcaagacgcattgtatggacgaaacaagatacaaatgatgccgcatatagacggtacaccataaccaccaaacaaa 40023323  T
Q  107 acatctagagattaatccaccaaaacacatcaccacctaacacagac 153  Q
     |  ||  |||| || ||| |||||||||||||||||||| ||||||    
T  40023324 gcccctgaagataaacccatcaaaacacatcaccacctaagacagac 40023370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 9583710 - 9583843
Alignment:
Q  9 aatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacac 108  Q
    |||||||||||||| |||| ||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  9583710 aatattattaaacgccatctccgtaagacacaaggtatagacgaaacaagatacaaatggtgccgcatatagacgatacaccataaccacctaaaaatac 9583809  T
Q  109 atctagagattaatccaccaaaacacatcaccac 142  Q
       |  | || || ||||||||||||||||||||    
T  9583810 ccttgaaaataaacccaccaaaacacatcaccac 9583843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 50305223 - 50305319
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacca 97  Q
    |||| ||||||||||||||||| ||| ||||||||||  |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  50305223 aatcagcaaatattattaaacgccattcccgcaagacgcaaggtatggacggaacaagatacaaatggtgtcgcatatagacggtacaccataacca 50305319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 43012796 - 43012654
Alignment:
Q  13 ttattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatct 112  Q
    |||||||| |||||||  |||||||  |||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||  ||    
T  43012796 ttattaaatgtcatcct-gcaagacgcaaggtatgaacgaaacaatatacaaatggtgccgcatatagacgatacaccataaccacctaaaaacactcct 43012698  T
Q  113 agagattaatccaccaaaacacatcaccacctaacacagactcc 156  Q
      |||  || ||||||||| ||||||||| |||| |||||||||    
T  43012697 gaagaaaaacccaccaaaagacatcaccatctaaaacagactcc 43012654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 23327997 - 23328095
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 99  Q
    |||| |||||||||||||||||  ||||| |||| ||  |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  23327997 aatcagcaaatattattaaacgctatccctgcaatacgcaaggtatggacgaaacaagatataaatggtgccgcatatatacggtacaccataaccacc 23328095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 45399217 - 45399119
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 99  Q
    |||| ||||||||||||||||| |||| ||| |||||   ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45399217 aatcagcaaatattattaaacgacatctccgaaagacgcgaggtatgaacgaaacaagatacaaacggtgccgcatatagacggtacaccataaccacc 45399119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 4463734 - 4463831
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 98  Q
    ||||||||||||||||||||||||| |||| ||||||  |||  ||||||||||||| | ||||||||||||||||||||||||| ||||||||||||    
T  4463734 aatcggcaaatattattaaacgtcaaccccacaagacgcaagacatggacgaaacaacacacaaatggtgccgcatatagacggtgcaccataaccac 4463831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 25506719 - 25506814
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 96  Q
    ||||| ||||||||||||||| |||||||||||||||  ||| |||  || |||||| ||||||||||||||||||||||||||||||||||||||    
T  25506719 aatcgacaaatattattaaacatcatccccgcaagacccaagatataaacaaaacaatatacaaatggtgccgcatatagacggtacaccataacc 25506814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 50560070 - 50559978
Alignment:
Q  7 caaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 99  Q
    |||||||||||||||||||||| ||||| ||  ||| |||||||||||||||||||||| | ||||||| ||||||||| |||||||||||||    
T  50560070 caaatattattaaacgtcatcctcgcaatacgcaagatatggacgaaacaagatacaaaagatgccgcacatagacggtgcaccataaccacc 50559978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 37158735 - 37158629
Alignment:
Q  3 tcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatat-agacggt-acaccataaccacct 100  Q
    |||||||||||||| ||||| ||||||||||||||  ||||||||||||||||| ||||||||||||||||||||| | | ||| |||| ||||||||||    
T  37158735 tcggcaaatattat-aaacgccatccccgcaagacgcaaggtatggacgaaacaggatacaaatggtgccgcatataatatggtaacactataaccacct 37158637  T
Q  101 aaaaacac 108  Q
    ||||||||    
T  37158636 aaaaacac 37158629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 47439347 - 47439284
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaa 64  Q
    ||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||    
T  47439347 aatcggcaaatattactaaacgtcatccctacaagacataaggtatggacgaaacaagatacaa 47439284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 5557011 - 5556918
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa 94  Q
    ||||||||||||||||||||||||||  ||| | ||  |||||| || |||||||||||||||||| ||   ||||||||| ||||||||||||    
T  5557011 aatcggcaaatattattaaacgtcatttccgtaggatgtaaggtttgaacgaaacaagatacaaatagttatgcatatagatggtacaccataa 5556918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 2392323 - 2392359
Alignment:
Q  169 cactgtaaacacggcatccaccaccgtccatcgtcac 205  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  2392323 cactgtaaacacggtatccaccaccgcccatcgtcac 2392359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 2394087 - 2394123
Alignment:
Q  169 cactgtaaacacggcatccaccaccgtccatcgtcac 205  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  2394087 cactgtaaacacggtatccaccaccgcccatcgtcac 2394123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 27555579 - 27555735
Alignment:
Q  1 aatcggcaaatattattaaacgtcatcccc-gcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 99  Q
    |||||||||||||||||||||| ||||||| |||||||  ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  27555579 aatcggcaaatattattaaacgccatcccccgcaagacgcaaggtatggacgaaacaagatacaaattgtgccgcatatagatggtacaccataaccacc 27555678  T
Q  100 taaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 156  Q
    |||||||||  ||  |||| || |||||||||||||||||||||||| ||| |||||    
T  27555679 taaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacaaactcc 27555735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 30964869 - 30964714
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    ||||| |||||||||||||||  |||||| |||||||  |||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||    
T  30964869 aatcgacaaatattattaaacaccatccctgcaagacgcaaggtatggacgaaacaagatacaaatgatgttgcatatagacggtacaccataaccacct 30964770  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 156  Q
    ||||||||  || ||||| || |||||||||||||||||||||||| |||||||||    
T  30964769 aaaaacactcctggagataaacccaccaaaacacatcaccacctaaaacagactcc 30964714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 35329439 - 35329302
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    ||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35329439 aatcggcaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacct 35329340  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatca 138  Q
    ||||| ||   |  |||| || ||||||||||||||||    
T  35329339 aaaaatacccatgaagataaacccaccaaaacacatca 35329302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 8255459 - 8255255
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    ||||||||||||||||||||||  ||| |||||||| ||||||| ||||||| |||||||||||||| |||||||||||||||||||| |||||||||||    
T  8255459 aatcggcaaatattattaaacgctatctccgcaagatataaggtgtggacgagacaagatacaaatgatgccgcatatagacggtacatcataaccacct 8255360  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 200  Q
    ||||||||  ||  |||| ||  ||| ||||||||||||||||||| |||||||||        ||| |||||||||||| | |||||||||   |||||    
T  8255359 aaaaacactcctgaagataaactcacaaaaacacatcaccacctaaaacagactccaaataaaacaagcactgtaaacacagtatccaccacatcccatc 8255260  T
Q  201 gtcac 205  Q
    |||||    
T  8255259 gtcac 8255255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 8268877 - 8268673
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    ||||||||||||||||||||||  ||| |||||||| ||||||| ||||||| |||||||||||||| |||||||||||||||||||| |||||||||||    
T  8268877 aatcggcaaatattattaaacgctatctccgcaagatataaggtgtggacgagacaagatacaaatgatgccgcatatagacggtacatcataaccacct 8268778  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 200  Q
    ||||||||  ||  |||| ||  ||| ||||||||||||||||||| |||||||||        ||| |||||||||||| | |||||||||   |||||    
T  8268777 aaaaacactcctgaagataaactcacaaaaacacatcaccacctaaaacagactccaaataaaacaagcactgtaaacacagtatccaccacatcccatc 8268678  T
Q  201 gtcac 205  Q
    |||||    
T  8268677 gtcac 8268673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 7703118 - 7703018
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7703118 aatcggcaaatattattaaacgtcatccccgcaagacacaaggtatggatgaaa-aagatacaaatggtgccgcatatagacggtacaccataaccacct 7703020  T
Q  101 aa 102  Q
    ||    
T  7703019 aa 7703018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 4306136 - 4306033
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||||||||||||||||| |||||||||| |||||  |||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  4306136 aatcggcaaatattattaaatgtcatccccggaagacgcaaggtatgaacgaaa-aagatataaatggtgccgcatatagacggtacaccataaccacct 4306038  T
Q  101 aaaaa 105  Q
    |||||    
T  4306037 aaaaa 4306033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 30167212 - 30167407
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgc--cgcatatagacggtacaccataaccac 98  Q
    ||||| |||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||| |||     ||||||||||||||| |||||||     
T  30167212 aatcgacaaatattattaaacgtcatcctcgcaagacgcaaggtatggacgaaacaagatacaaatgatgcaaaaaatatagacggtacactataaccat 30167311  T
Q  99 ctaaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccg 194  Q
    ||||||| ||  ||  |||| || |||||||||||||||||  ||||| |||||||||        ||| |||||||||||||| |||||||||||    
T  30167312 ctaaaaataccactgaagataaacccaccaaaacacatcacatcctaaaacagactccaaaaaaatcaagcactgtaaacacggtatccaccaccg 30167407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 8705789 - 8705896
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||||||||||||||||||||||||||  ||||||   ||||||||||||  || |||||||||||||| ||||||||||||||||||||||||||||    
T  8705789 aatcggcaaatattattaaacgtcatcccttcaagacgcgaggtatggacgaggcaggatacaaatggtgctgcatatagacggtacaccataaccacct 8705888  T
Q  101 aaaaacac 108  Q
    ||||||||    
T  8705889 aaaaacac 8705896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 20465005 - 20464818
Alignment:
Q  17 taaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctagag 116  Q
    |||||||||||| | |||||   |||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||  ||    
T  20465005 taaacgtcatcctcacaagatgcaaggtatgaaagaaacaagatacaaatggtgccgtatatagacggtacaccataaccacctaaaaacacccctgaag 20464906  T
Q  117 attaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatcgtcac 205  Q
    || || ||||||| | |||||||||||||| ||| ||| |        ||||| |||||||||||| ||||||||||| ||||||||||    
T  20464905 ataaacccaccaacatacatcaccacctaaaacaaacttc-aaaaaaacaaaccctgtaaacacggtatccaccaccgcccatcgtcac 20464818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 46698428 - 46698525
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 98  Q
    |||| |||||||||||||||||||||||  | |||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46698428 aatcagcaaatattattaaacgtcatccatgaaagacgcaaggtatggtcgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 46698525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 49528514 - 49528421
Alignment:
Q  5 ggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 98  Q
    ||||||||| |||||||  || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49528514 ggcaaatatcattaaacaccaaccccgcaaaacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccaaaaccac 49528421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 2826213 - 2826118
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 96  Q
    |||| |||||||||||||||||||||| | |||||||  |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  2826213 aatcagcaaatattattaaacgtcatctctgcaagacgcaaggtatggacggaacaagatacaaatggtgccgcatatatacggtacaccataacc 2826118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 11281375 - 11281511
Alignment:
Q  2 atcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccaccta 101  Q
    |||||||||||||||| ||||||||| || ||||||  ||| ||||||||||||| |||| ||||||||| | |||||||||||| ||||||||||||||    
T  11281375 atcggcaaatattattgaacgtcatctccacaagacgcaagatatggacgaaacatgatataaatggtgctgtatatagacggtataccataaccaccta 11281474  T
Q  102 aaaacacatctagagattaatccaccaaaacacatca 138  Q
    ||||||| |||  |||| |  |||| |||||||||||    
T  11281475 aaaacacctctgaagataaccccactaaaacacatca 11281511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 35341006 - 35341097
Alignment:
Q  7 caaatattattaaacgtcatcccc--gcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 96  Q
    ||||||||||||||||||||||||  |||||||  || |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35341006 caaatattattaaacgtcatccccccgcaagacgcaatgtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataacc 35341097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 36689454 - 36689609
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    ||||| ||||||||||||||   |||| |||||||||   |||||||||||||| ||||||||||||||  |||||||||||||||||| |||||||| |    
T  36689454 aatcgacaaatattattaaataccatctccgcaagacgcgaggtatggacgaaataagatacaaatggtatcgcatatagacggtacactataaccactt 36689553  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 156  Q
    ||||||||  ||  |||| ||  |||||||||||||||||| |||| ||| |||||    
T  36689554 aaaaacacccctgaagataaactcaccaaaacacatcaccatctaaaacatactcc 36689609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 31050315 - 31050408
Alignment:
Q  6 gcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 99  Q
    ||||||||||||||||||| |||||||||||    | ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  31050315 gcaaatattattaaacgtcgtccccgcaagatgcgatgtatggacgaaacaagatacaaatgatgtcgcatatagacggtacaccataaccacc 31050408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 9750198 - 9750116
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacgg 84  Q
    ||||| |||||||||||||||||||||||||||||||  | ||| |||||||||||||||||||||||||||||||||||||||    
T  9750198 aatcgacaaatattattaaacgtcatccccgcaagacgca-ggtttggacgaaacaagatacaaatggtgccgcatatagacgg 9750116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 52868766 - 52868859
Alignment:
Q  7 caaatattattaaa-cgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 99  Q
    |||||||||||||| |||||||  | |||||| ||||||||| |||||  ||||||||||||||| ||| ||||||||||||||||||||||||    
T  52868766 caaatattattaaaacgtcatcttcacaagacgtaaggtatgaacgaattaagatacaaatggtgtcgcgtatagacggtacaccataaccacc 52868859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 7e-47; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 3254389 - 3254234
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||  |||||||||| ||||||    
T  3254389 aatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgtatatagatagtacaccatagccacct 3254290  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 156  Q
    ||||||||  ||  | || || ||||||||| |||||||||||||| |||||||||    
T  3254289 aaaaacacccctgaaaataaacccaccaaaatacatcaccacctaaaacagactcc 3254234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 3117922 - 3117781
Alignment:
Q  5 ggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaa 104  Q
    |||||||||||||||||||||| || ||||||| |||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  3117922 ggcaaatattattaaacgtcattcctgcaagacgtaaggtatggacgaaataagatacaaatggtgcagcatatagacgctacaccataaccacctaaaa 3117823  T
Q  105 acacatctagagattaatccaccaaaacacatcaccacctaa 146  Q
    |||| || | |||| || | |||||| |||||||||||||||    
T  3117822 acacctccaaagataaacctaccaaaccacatcaccacctaa 3117781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 15944431 - 15944276
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||||||||||||||||||| |||||| | |||||  |||||||||||  || ||||||||||||||| ||||||||||||||||||||||| |||||    
T  15944431 aatcggcaaatattattaaacgccatccctgtaagacgcaaggtatggacagaagaagatacaaatggtgtcgcatatagacggtacaccataaacacct 15944332  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 156  Q
    ||||| ||  ||  | || || |||||||||||||||||||||||| |||||||||    
T  15944331 aaaaatacccctgaatataaacccaccaaaacacatcaccacctaaaacagactcc 15944276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 10542262 - 10542156
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||| |||||||||||| || |||||| ||||||   ||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  10542262 aatcggaaaatattattaagcgccatccc-gcaagatgcaagatatgaacgaaacaagatacaaaaggtgccgcatatagacgatacaccataaccacct 10542164  T
Q  101 aaaaacac 108  Q
    ||||||||    
T  10542163 aaaaacac 10542156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 33697789 - 33697843
Alignment:
Q  44 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33697789 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 33697843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 15132489 - 15132573
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggt 85  Q
    |||| ||||||||||||||||| ||||  |||||||| |||||||||||| |||||||||||||||| ||||| |||||||||||    
T  15132489 aatcagcaaatattattaaacgccatcatcgcaagacgtaaggtatggacaaaacaagatacaaatgatgccgtatatagacggt 15132573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 14663480 - 14663414
Alignment:
Q  6 gcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgc 74  Q
    ||||||||||||||||||||| || |||||||  |||||||||||| ||||||||||||||| ||||||    
T  14663480 gcaaatattattaaacgtcat-cctgcaagacgaaaggtatggacg-aacaagatacaaatgctgccgc 14663414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 14663414 - 14663357
Alignment:
Q  99 ctaaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 156  Q
    ||||||||||  || ||||| || |||| ||||||||||||||||||| |||||||||    
T  14663414 ctaaaaacacccctggagataaacccacgaaaacacatcaccacctaaaacagactcc 14663357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 16598939 - 16598967
Alignment:
Q  10 atattattaaacgtcatccccgcaagaca 38  Q
    |||||||||||||||||||||||||||||    
T  16598939 atattattaaacgtcatccccgcaagaca 16598967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 2 - 155
Target Start/End: Complemental strand, 19349 - 19196
Alignment:
Q  2 atcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa-ccacct 100  Q
    ||||||||||||||||||||||||||| ||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19349 atcggcaaatattattaaacgtcatcctcgcaagacgcatggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacccacct 19250  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactc 155  Q
    ||||| | ||||  |||| || ||||||||| |||||||||||||| ||||||||    
T  19249 aaaaa-aaatctgaagataaacccaccaaaatacatcaccacctaaaacagactc 19196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 387608 - 387453
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    ||||| || |||||||||||||||||| ||||||| |  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  387608 aatcgacagatattattaaacgtcatcaccgcaagtcgcagggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccactt 387509  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 156  Q
    ||||||||   |  |||| || |||||||||||||||||||||||| |||||||||    
T  387508 aaaaacacccatgaagataaacccaccaaaacacatcaccacctaaaacagactcc 387453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 39338510 - 39338665
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||||||||||||||||||| ||||  || |||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39338510 aatcggcaaatattattaaacgccatcatcgtaagacgcaatgtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 39338609  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatca-ccacctaacacagactc 155  Q
     |||||||  ||  |||| || |||||||||||||||| |||||||| ||||||||    
T  39338610 gaaaacacccctgaagataaacccaccaaaacacatcacccacctaaaacagactc 39338665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 10524529 - 10524328
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||||||||||||||||||||| || ||| |||||||  |||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||    
T  10524529 aatcggcaaatattattaaacgcca-ccctgcaagacgcaaggtatggacgaaacaatatacaaatggtgcagcatatagatggtacaccataaccacct 10524431  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 200  Q
    ||||||||  ||  |||| || |||||||||||| |||||  |||| ||| |||||        ||| ||| |||||||||| ||||||||||| |||||    
T  10524430 aaaaacacccctgaagataaacccaccaaaacacgtcaccgtctaaaacaaactcc--aaaaaacaagcaccgtaaacacggtatccaccaccgcccatc 10524333  T
Q  201 gtcac 205  Q
    |||||    
T  10524332 gtcac 10524328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 14436916 - 14437010
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataac 95  Q
    |||| ||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14436916 aatcagcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataac 14437010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 5254684 - 5254540
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||| ||||||||||||||||||||||| |||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||     
T  5254684 aatcagcaaatattattaaacgtcatcctcgcaagacgtaaggtatggacgaaa-tagatacaaatggtgccgcatatagacggtacaccataacctcca 5254586  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaa 146  Q
    || ||  |   |  |||| || ||||||||||||||||||||||||    
T  5254585 aacaaagctcatgaagataaacccaccaaaacacatcaccacctaa 5254540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 14405630 - 14405487
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||| |||||||||||||||||| || || ||||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  14405630 aatcagcaaatattattaaacgttattcctgcaagacgtaaggtatgaacgaa-caagatacaaatggtgctgcatatagacggtacaccataaccacct 14405532  T
Q  101 aaaaacacatctagagattaatccaccaaaacacatcaccacctaa 146  Q
    || ||  |  ||| ||| ||| | ||||||||||||||||||||||    
T  14405531 aacaaagcccctaaaga-taacctaccaaaacacatcaccacctaa 14405487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 43816096 - 43816191
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 96  Q
    |||||||||||||||||||||||||| ||||||| ||  ||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  43816096 aatcggcaaatattattaaacgtcattcccgcaaaacgcaaggtatggacgaaacaaagtacaaatgatgccgcatatagacggtacaccataacc 43816191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 3745773 - 3745676
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 98  Q
    |||||||||||||||||||| |||||||||  |||||  |||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||    
T  3745773 aatcggcaaatattattaaatgtcatccccataagacgcaaggtatggacgaaacaagatacaaatggtgctgcatatagatggtacatcataaccac 3745676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 41877207 - 41877308
Alignment:
Q  7 caaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaac 106  Q
    |||||||||||||||  ||||||||||||||  ||| |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| |||||    
T  41877207 caaatattattaaactccatccccgcaagacgcaagatatggacgaaacaatatacaaatggtaccgtatatagacggtacaccataaccacctgaaaac 41877306  T
Q  107 ac 108  Q
    ||    
T  41877307 ac 41877308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 7874709 - 7874610
Alignment:
Q  1 aatcggcaaatattattaaa-cgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 99  Q
    |||| ||||||||||||||| || ||||| ||||||||| ||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7874709 aatcagcaaatattattaaaacgccatcctcgcaagacacaaggtatagacaaaacaagatacaaatggcgccgcatatagacggtacaccataaccacc 7874610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 14106172 - 14106269
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 99  Q
    |||| ||||||||||||||||| ||||| ||||||||  | |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14106172 aatcagcaaatattattaaacgccatcctcgcaagacgcagggtatg-acgaaacaagatagaaatggtgccgcatatagacggtacaccataaccacc 14106269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 17116553 - 17116635
Alignment:
Q  17 taaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 99  Q
    |||||||||||||||||||||  ||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||    
T  17116553 taaacgtcatccccgcaagacgcaaggtatggacgagacaagatacaaatgatgccgcatatagacggtacactataaccacc 17116635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 13512495 - 13512584
Alignment:
Q  8 aaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacca 97  Q
    ||||||||||||||||||| ||||||||||  || ||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||    
T  13512495 aaatattattaaacgtcattcccgcaagacgcaatgtatggacgaaacaaaatacaaatgatgccgcatatagacggtacaacataacca 13512584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 43248882 - 43248971
Alignment:
Q  7 caaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 96  Q
    |||||||||||||||||||||| | ||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| | |||||||    
T  43248882 caaatattattaaacgtcatcctcacaagacacaaggtatggacgaaacaagatataaatggcgccgcatatagacggtatatcataacc 43248971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 15457893 - 15457817
Alignment:
Q  2 atcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatat 78  Q
    ||||||||||| ||||||||||||||||||||||||  | | |||||||||||||||||||||||||||||||||||    
T  15457893 atcggcaaataatattaaacgtcatccccgcaagacgcatgatatggacgaaacaagatacaaatggtgccgcatat 15457817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 22888552 - 22888694
Alignment:
Q  11 tattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacat 110  Q
    |||||||||| |||||||| |||||||  || ||||||| |||||||| || |||||||||| ||||||||||||| | |||||||| |||| |||||      
T  22888552 tattattaaatgtcatccc-gcaagacgcaatgtatggatgaaacaaggtagaaatggtgccacatatagacggtatatcataaccaactaagaacaccc 22888650  T
Q  111 ctagagattaatccaccaaaacacatcaccacctaacacagact 154  Q
    ||  |||| || |||||||||| ||||||||||||| |||||||    
T  22888651 ctgaagataaacccaccaaaacgcatcaccacctaaaacagact 22888694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 7461107 - 7461010
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 99  Q
    |||| ||||||||||||||||||||||||||||||||  |  ||||| ||||||||| ||||||||||||  |||||||||| ||||||||||||||||    
T  7461107 aatcagcaaatattattaaacgtcatccccgcaagacgcagagtatg-acgaaacaaaatacaaatggtgttgcatatagacagtacaccataaccacc 7461010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 45311453 - 45311550
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 98  Q
    ||||||| |||||||||||||| || ||||||||||   |||| | |||||||||||||||||||||||||| |||||| |||| |||||||||||||    
T  45311453 aatcggccaatattattaaacgccaaccccgcaagatgcaaggaaaggacgaaacaagatacaaatggtgccacatatatacggaacaccataaccac 45311550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 9823761 - 9823695
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatg 67  Q
    |||||||||||||||||||||| |||| |||||||||| |||||||| | |||||||||||||||||    
T  9823761 aatcggcaaatattattaaacgccatctccgcaagacacaaggtatgaatgaaacaagatacaaatg 9823695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 7455676 - 7455601
Alignment:
Q  8 aaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacgg 84  Q
    ||||| ||||||||||||||||||||||||  | |||||| |||||| |||||||||||||||||||| ||||||||    
T  7455676 aaataatattaaacgtcatccccgcaagacgca-ggtatgaacgaaataagatacaaatggtgccgcaaatagacgg 7455601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 25280964 - 25281032
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggt 69  Q
    |||||| ||||||||||||||||||||||| ||||||  | |||||||||||||||||||| |||||||    
T  25280964 aatcggaaaatattattaaacgtcatccccacaagacgcagggtatggacgaaacaagatataaatggt 25281032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 98
Target Start/End: Complemental strand, 15457307 - 15457278
Alignment:
Q  69 tgccgcatatagacggtacaccataaccac 98  Q
    ||||||||||||||||||||||||||||||    
T  15457307 tgccgcatatagacggtacaccataaccac 15457278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 48767 - 48614
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 100  Q
    |||| |||||||||||| |||||| ||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48767 aatccgcaaatattattcaacgtcctccccgcaagacacaagatatggactaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 48668  T
Q  101 aaaaacacatctagagattaatcc-accaaaacacatcaccacctaacacagact 154  Q
    ||||||||   || ||| |||||| |||||||||||||| ||||||| |||||||    
T  48667 aaaaacacccttaaaga-taatcctaccaaaacacatcatcacctaaaacagact 48614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 2345 - 2477
Alignment:
Q  24 catccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctagagattaatc 123  Q
    ||||||| ||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||   |  |||| || |    
T  2345 catccccacaagacgcaaggtatggacgaaacaagatacagatggtgccgcatatagacggtacaccataaccacctaaaaacacccttgaagataaacc 2444  T
Q  124 caccaaaacacatcaccacctaacacagactcc 156  Q
    ||||||| ||||||||||||||| ||| |||||    
T  2445 caccaaaccacatcaccacctaaaacaaactcc 2477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 6131 - 5991
Alignment:
Q  7 caaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaac 106  Q
    |||||||||||||||||||||||||||||||  ||| |||| |||| |||||||||||||||||||| ||||||||| |||| |||||||||||||||||    
T  6131 caaatattattaaacgtcatccccgcaagacgcaagatatgaacgagacaagatacaaatggtgccgtatatagacgttacatcataaccacctaaaaac 6032  T
Q  107 acatctagagattaa-tccaccaaaacacatcaccacctaa 146  Q
    || |||  |||| ||  |||| |||||||||||||||||||    
T  6031 acctctgaagataaaccccacaaaaacacatcaccacctaa 5991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 35473 - 35526
Alignment:
Q  1 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaa 54  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  35473 aatcggcaaatattattgaacgtcatccccgtaagacgtaaggtatggacgaaa 35526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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