View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16166_high_1 (Length: 466)
Name: NF16166_high_1
Description: NF16166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16166_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 32605468 - 32605019
Alignment:
| Q |
1 |
gtggcatccccttgatagggatggtgtacatgcaaacacttagataatcagttgttttttgtgattagaaaattgtgtacctttatccacactatacaat |
100 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32605468 |
gtggcatccccttgataagaatggtgtacatgcaaacacttagataatcagttgttttttgtgattagaaaattgtgtacctttatccacactacacaat |
32605369 |
T |
|
| Q |
101 |
gaaaatggattagtcattgagttgtattcggtataatttgcagattaacatttcatttccatcatgtgatgccagtgagatcaccaaatttactatggtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32605368 |
gaaaatggattagtcattgagttgtattcggtataatttgcaaattaacatttcatttccatcatgtgatgccagtgagatcatcaaatttactatggtg |
32605269 |
T |
|
| Q |
201 |
tgccgtcagtgcaacttcataacgtgttcctttgtgatctaatccgtagttgattgggtttaaatccattccataacacaaacaaagaccgggtaagacg |
300 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| || |
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| T |
32605268 |
tgccgtcagtgcaacttcatattgtgttcctttgtgatctaatctgtagttgattgggtttaaatccattccaaaacacaaacaaagattgggtaaagcg |
32605169 |
T |
|
| Q |
301 |
gaaggggttagactttcaaaacatggtgaatcaatattgtgtaggaaaaaacattgattccataataaacataaaatcagattctagtaattgatcggaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32605168 |
gaaggggttagactttcaaaacatggtgaatcaatattgtgtaggaaaaaacattgattccataataaacataaaatcagattctagtaattgatcggaa |
32605069 |
T |
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| Q |
401 |
tatgggctcgttttggaaaatggataagggaatctctaagatgaaaaatt |
450 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32605068 |
tatgggcttgttttggaaaatggataagggaatctctaaggtgaaaaatt |
32605019 |
T |
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