View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16167_low_2 (Length: 492)
Name: NF16167_low_2
Description: NF16167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16167_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 10 - 474
Target Start/End: Original strand, 1623601 - 1624078
Alignment:
| Q |
10 |
agatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgaaatagcacaccgatagaagacagaga---------- |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1623601 |
agatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgatatagcacaccgatagaagacagagagatcggaggc |
1623700 |
T |
|
| Q |
100 |
---tcggagcgccacagcttggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatgcctaaatttaaa |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1623701 |
tgatcggagcgccacagcttggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatgcctgaatttaaa |
1623800 |
T |
|
| Q |
197 |
agattcaagagaaatatgtaaaaattagaaactataaataacattctaaactctaaagtgttcgtgctagacaagttgcaagaaagccattagacactta |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| |
|
|
| T |
1623801 |
agattcaagagaaatatgtaaaaattagaaactataaataacattctaaactctaaagtgttcgtgttagacaagttgcaagaaagccattagagaatta |
1623900 |
T |
|
| Q |
297 |
tgaatatcatatatagctatgatataaagagcacatttccgtgacatctaattttcaacactgatttactattgaattttagggctttaaaactagaaaa |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1623901 |
tgaatatcatatatagctatgatataaagagcacatttccatgacatctaattttcaacactgatttactattgaattttagggctttaaaactagaaaa |
1624000 |
T |
|
| Q |
397 |
aactaaatagggcttttcagcactgatttacacaaagatacatgtagattgattttatttttccagtctctatctttc |
474 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1624001 |
aactaaatagggcttttcaacactgatttacacaaagatacatgtagattgattttatttttccagtctctatctttc |
1624078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 388
Target Start/End: Original strand, 1606479 - 1606873
Alignment:
| Q |
10 |
agatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgaaatagcacaccgatagaagac--agagatcggag-- |
105 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || || || |||||||||||||| || ||||||||||| |
|
|
| T |
1606479 |
agatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggaggc |
1606578 |
T |
|
| Q |
106 |
---------cgccacagcttggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatgcctaaatttaaa |
196 |
Q |
| |
|
|||||| ||||| || ||||| ||||| || |||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
1606579 |
tgatcttagcgccactgcttgacccttgtgtggaccggcggtattttggaaggttatgtcacgtgcaatgaagtgaagtccatcaatacctaaatttaaa |
1606678 |
T |
|
| Q |
197 |
agattcaagagaaatatgtaaaaa-ttagaaactataaataacattctaaactcta--aagtgttcgtgctagacaagttgcaagaaagccattagacac |
293 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
1606679 |
tgatccaagagaaatatgtaaaaaattagaaactataaataacaatctaaactctataaagtgttcgtgctacataagttgcaagaaagccattagacca |
1606778 |
T |
|
| Q |
294 |
ttatgaatatcatatatagctatgatataaagagcacatttccgtgacatctaattttcaacactgatttactattgaattttagggctttaaaa |
388 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1606779 |
gtatgaatatcatatatacctatgatataaagagcacatttccgtgacaactagttttaaacactgatttagtattgaattttagggctttaaaa |
1606873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 10 - 207
Target Start/End: Original strand, 1629777 - 1629987
Alignment:
| Q |
10 |
agatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgaaatagcacaccgatagaagac--agagatcgg---- |
103 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || || || |||||||||||||| || ||||||||| |
|
|
| T |
1629777 |
agatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggacgc |
1629876 |
T |
|
| Q |
104 |
-------agcgccacagcttggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatgcctaaatttaaa |
196 |
Q |
| |
|
|||||||||||||| || ||||| ||||| || |||||||| ||||| ||||| ||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
1629877 |
tgatcttagcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaagtgaagtccatcaatacctaaatttaaa |
1629976 |
T |
|
| Q |
197 |
agattcaagag |
207 |
Q |
| |
|
||| |||||| |
|
|
| T |
1629977 |
tgatccaagag |
1629987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 10820921 - 10820711
Alignment:
| Q |
10 |
agatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgaaatagcacaccgatagaagacagaga---------- |
99 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||| || |||||||| || ||||| || | |||||| |||||||| |||| |
|
|
| T |
10820921 |
agatgaagcattgtctgtaaaattgacgttgtgcatgagccatgagggtgtcttggtaacccgatattgtacaccggtagaagacggagagatcagaggc |
10820822 |
T |
|
| Q |
100 |
---tcggagcgccacagcttggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatgcctaaatttaaa |
196 |
Q |
| |
|
|||||||||||| ||||| || ||||| ||||| || |||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
10820821 |
tgatcggagcgccactgcttgacccttgtgtggaccggcggtattttggaaggttatgtcacgtgcaatgaagtgaagtccatcaatacctaaatttaaa |
10820722 |
T |
|
| Q |
197 |
agattcaagag |
207 |
Q |
| |
|
||| |||||| |
|
|
| T |
10820721 |
tgatccaagag |
10820711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 3e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 10 - 265
Target Start/End: Original strand, 18781295 - 18781563
Alignment:
| Q |
10 |
agatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgaaatagcacaccgatagaagacagaga---------- |
99 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||||| ||||| || |||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
18781295 |
agatgaagcattgtctgtaaaattgacgttgcgcatgggccataagggtgtcttggtagcccgatatagcacaccgatagaagacagagagatcggaggc |
18781394 |
T |
|
| Q |
100 |
---tcggagcgccacagcttggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatgcctaaatttaaa |
196 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18781395 |
tgatcggagcgccacagcttgacctttatgaggaccagcagtattttggaaggttatgtcgcgggcaatgaaatgaagtccatcaatgcctgaatttaaa |
18781494 |
T |
|
| Q |
197 |
agattcaagagaaatatgtaaaaattagaaactataaataacattctaaactctaaagtgttcgtgcta |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
18781495 |
agattcaagagaaatatgtaaaaattagaaactataaataacaatctaaactctaaagtgtccgtgcta |
18781563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 12802995 - 12803052
Alignment:
| Q |
131 |
ccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatgccta |
188 |
Q |
| |
|
||||| || |||| ||| |||||||||||||||||||| ||||| |||||||| |||| |
|
|
| T |
12802995 |
ccagccgtgttttcaaaagtaatgtcacgtgcaatgaagtgaagaccatcaattccta |
12803052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University