View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16167_low_3 (Length: 333)
Name: NF16167_low_3
Description: NF16167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16167_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 56 - 322
Target Start/End: Original strand, 5700940 - 5701207
Alignment:
| Q |
56 |
cgtgaaaggttagcactctttaatctttaacactannnnnnnn-gtttgaggaaatcaatcttaagcaaacggtgcaacaaattgaaacggtgttgacca |
154 |
Q |
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| T |
5700940 |
cgtgaaaggttagaactctttaatttttaacactatttttttttgtttgagggaattaatcttaagcaaacggtgcaacaaattgaaacggtgttgacca |
5701039 |
T |
|
| Q |
155 |
tctttttcttttgttgaattgcataacaatgaagacatagtgtgcataacaatagataccgttcagattgcttatatatgttcaagcgtccgtgaatttt |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5701040 |
tctttttcttttgttgaattgcataacaatgaagacatagtgtgcataacaatagataccgttcagattgcttatatatgttcaagcgtccgtgaatttt |
5701139 |
T |
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| Q |
255 |
cgtgaaaataagtccagtgctatatagcacttctcttatagcgcgttataagtttatttgactaagaa |
322 |
Q |
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| T |
5701140 |
catgaaaataagtccagtactatacagcacttctcttatagcgcgttataagtttatttgactcagaa |
5701207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 32245993 - 32245913
Alignment:
| Q |
116 |
ttaagcaaacggtgcaacaaattgaaacggtgttgaccatctttttcttttgttgaattgcataacaatgaagacatagtg |
196 |
Q |
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| T |
32245993 |
ttaaacaaacggtgcatcaaattcaaacggtgttgaccacctttttatttggttgaattgcataacaatgaagacatagtg |
32245913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 19384344 - 19384264
Alignment:
| Q |
116 |
ttaagcaaacggtgcaacaaattgaaacggtgttgaccatctttttcttttgttgaattgcataacaatgaagacatagtg |
196 |
Q |
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| T |
19384344 |
ttaaacaaacggtgcatcaaattcaaacggtgttaaccacctttttatttggttgaattgcataacaatgaagacatagtg |
19384264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 293
Target Start/End: Original strand, 27763990 - 27764046
Alignment:
| Q |
238 |
aagcgtccgtgaattttc-gtgaaaataagtccagtgctatatagcacttctcttat |
293 |
Q |
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| T |
27763990 |
aagcgtccgtgaatttcccgtgaaaataattcccgtactatatagcacttctcttat |
27764046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 291
Target Start/End: Complemental strand, 32245843 - 32245795
Alignment:
| Q |
243 |
tccgtgaattttcgtgaaaataagtccagtgctatatagcacttctctt |
291 |
Q |
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| T |
32245843 |
tccgtgaattttcatgaaaataacttccgtactatatagcacttctctt |
32245795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 58 - 289
Target Start/End: Original strand, 33528946 - 33529173
Alignment:
| Q |
58 |
tgaaaggttagcactctttaatctttaacactannnnnnnngtttgaggaaatcaatcttaagcaaacggtgcaacaaattgaaacggtgttgaccatct |
157 |
Q |
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||||||||||||||||||||||||||||||||| | |||||| ||| ||||||||||||| |||||||||||||||||||||| |||||| || |
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| T |
33528946 |
tgaaaggttagcactctttaatctttaacactaattttttcgattgagggaattaatcttaagcaaatggtgcaacaaattgaaacggtgctgaccacct |
33529045 |
T |
|
| Q |
158 |
ttttcttttgttgaattgcataacaatgaagacatagtgtgcataacaatagataccgttcagattgcttatatatgttcaagcgtccgtgaattttcgt |
257 |
Q |
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| T |
33529046 |
ttttctttggttgaattgcataacaatgaagacata--gtgcataacaatagataccgttcaggtttct--tatatggtcaagcgtccgtgaattttcgt |
33529141 |
T |
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| Q |
258 |
gaaaataagtccagtgctatatagcacttctc |
289 |
Q |
| |
|
||||||| ||| || |||||||||||||||| |
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| T |
33529142 |
caaaataaatccggtactatatagcacttctc |
33529173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 5473397 - 5473322
Alignment:
| Q |
144 |
ggtgttgaccatctttttcttttgttgaattgcataacaatgaagacatagtg---tgcataacaatagataccgt |
216 |
Q |
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||||||||||| |||||||||| | |||||||||||||||| | |||||||| |||||||||||||| ||||| |
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| T |
5473397 |
ggtgttgaccacctttttctttggctgaattgcataacaatagacacatagtgcactgcataacaatagaaaccgt |
5473322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 33803629 - 33803709
Alignment:
| Q |
116 |
ttaagcaaacggtgcaacaaattgaaacggtgttgaccatctttttcttttgttgaattgcataacaatgaagacatagtg |
196 |
Q |
| |
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| T |
33803629 |
ttaaacaaaaggtgcaacaaattcaaacgatgttgaccacctttttatttggttgaattgcataacaatgaagacatagtg |
33803709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 21269238 - 21269169
Alignment:
| Q |
144 |
ggtgttgaccatctttttcttttgttgaattgcataacaatgaagacatagtg---tgcataacaataga |
210 |
Q |
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||||||||||| |||||||||| | | |||||||||||||| |||||||||| |||||||||||||| |
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| T |
21269238 |
ggtgttgaccacctttttctttggctaaattgcataacaatagagacatagtgcactgcataacaataga |
21269169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 43549839 - 43549893
Alignment:
| Q |
238 |
aagcgtccgtgaattttc-gtgaaaataagtccagtgctatatagcacttctctt |
291 |
Q |
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|
|||||||||||||||| | |||||||||| ||| || |||||||||||||||||| |
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| T |
43549839 |
aagcgtccgtgaatttcccgtgaaaataattcccgtactatatagcacttctctt |
43549893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 44617489 - 44617440
Alignment:
| Q |
240 |
gcgtccgtgaattttcgtgaaaataagtccagtgctatatagcacttctc |
289 |
Q |
| |
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||||||||||||||| |||||||||| | | || |||||||||||||||| |
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|
| T |
44617489 |
gcgtccgtgaatttttgtgaaaataatttccgtactatatagcacttctc |
44617440 |
T |
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