View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16167_low_4 (Length: 298)
Name: NF16167_low_4
Description: NF16167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16167_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 39847216 - 39847469
Alignment:
| Q |
16 |
atcaacaaaagaaactaataaagcacattgcagtgtatccgagaaccgaatattatgaaacatcaataatcttgcaaaccttgattctgcattgtaggtt |
115 |
Q |
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| T |
39847216 |
atcaacaaaagaaactaataaaacacattgcagtgtatccgagaaccgaatattatgaaacatcaataatctcgcaaaccttgattctgcattgtaggtt |
39847315 |
T |
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| Q |
116 |
ctacacaactaatggttccaagacttaggctaacacccctttaagtcattgttctcagatttagattttgaaccttccatcattgacaagaaattagaaa |
215 |
Q |
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| T |
39847316 |
ctacacaactaattgttccaagacttaggctaacacccctttaagtcattgttctgagatttagattttgaaccttccatcattgacatgaaattagaaa |
39847415 |
T |
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| Q |
216 |
ataacagtgcagattcgtgagtgatctctaattggccttacaacaatatatcaa |
269 |
Q |
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| T |
39847416 |
ataacaatacagattcgcgagtgatctctaattggccatacaacaatatatcaa |
39847469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 39842282 - 39842551
Alignment:
| Q |
16 |
atcaacaaaagaaactaataaagcacattgcagtgtatccgagaaccgaatattatgaaacatcaataatcttgcaaaccttgattctgcattgtaggtt |
115 |
Q |
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| T |
39842282 |
atcaacaaaagaaactaataaaacacattgcagtgtatccgtgaaccgaatattatgaaacatcaataatctcgcaaaccttgattctgcattgtaggtt |
39842381 |
T |
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| Q |
116 |
ctacacaactaatggtt----ccaagacttaggctaacacccctttaagtcattgttctcagatttagattttgaaccttccatcattga-caagaaatt |
210 |
Q |
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| T |
39842382 |
ctacgcaactaattgtttcaatcaagacttaggctaacacccctttaagtcattgttctgagatttagattttgaaccttccatcattgaccaagaaatt |
39842481 |
T |
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| Q |
211 |
agaaaataacagtgcagattcgtgagtgatctctaattggccttacaacaatatatcaattcacagtttg |
280 |
Q |
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| T |
39842482 |
agaaaataacagtacagattcgtgagtgatctctaattggccatacaacaatatatcaattcacagtttg |
39842551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 177 - 280
Target Start/End: Original strand, 39847479 - 39847582
Alignment:
| Q |
177 |
tagattttgaaccttccatcattgacaagaaattagaaaataacagtgcagattcgtgagtgatctctaattggccttacaacaatatatcaattcacag |
276 |
Q |
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| T |
39847479 |
tagattttgaaccttccatcattgacaagaaattagaaaataacagtacagattcgtgagtgatctctaattggccttacaacaatatatcaattcacag |
39847578 |
T |
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| Q |
277 |
tttg |
280 |
Q |
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|||| |
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| T |
39847579 |
tttg |
39847582 |
T |
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