View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16167_low_5 (Length: 254)
Name: NF16167_low_5
Description: NF16167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16167_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 62 - 225
Target Start/End: Complemental strand, 21604430 - 21604267
Alignment:
| Q |
62 |
ttacgaacaatatctaaattttcttgagttattatgatgacataagggtatttcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggc |
161 |
Q |
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| T |
21604430 |
ttacgaacaatatctaaattttcttgagttattatgatgacataagggtatttcctgtaagaaatatcgagcttccaatattcctgcaaatttctctggc |
21604331 |
T |
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| Q |
162 |
ctaataataaaacattcagccaaattataatagttgataggttatcttagatccaagctcacaa |
225 |
Q |
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| T |
21604330 |
ctaataataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaa |
21604267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 62 - 225
Target Start/End: Complemental strand, 38028442 - 38028279
Alignment:
| Q |
62 |
ttacgaacaatatctaaattttcttgagttattatgatgacataagggtatttcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggc |
161 |
Q |
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| T |
38028442 |
ttacgaacaatatctaaattttcttgagttattatgatgacataagggtatttcctgtaagaaatatcgagcttccaatattcctgcaaatttctctggc |
38028343 |
T |
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| Q |
162 |
ctaataataaaacattcagccaaattataatagttgataggttatcttagatccaagctcacaa |
225 |
Q |
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| T |
38028342 |
ctaataataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaa |
38028279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 65 - 225
Target Start/End: Complemental strand, 38033473 - 38033313
Alignment:
| Q |
65 |
cgaacaatatctaaattttcttgagttattatgatgacataagggtatttcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggccta |
164 |
Q |
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| T |
38033473 |
cgaacaatatctaaattttcttgagttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaatttctctggccta |
38033374 |
T |
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| Q |
165 |
ataataaaacattcagccaaattataatagttgataggttatcttagatccaagctcacaa |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38033373 |
ataataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaa |
38033313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 225
Target Start/End: Original strand, 50910454 - 50910577
Alignment:
| Q |
95 |
atgatgacataagggtatttcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggcctaataataaaacattcagccaaattataatag |
194 |
Q |
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| T |
50910454 |
atgatgacataagagaatgtgctgtaagcaatatcgagct-cgaatattcctgcaaatttct--ggcctaat---aaaacattcagccaaactaaagtag |
50910547 |
T |
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| Q |
195 |
ttgataggttatcttagatccaagctcacaa |
225 |
Q |
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|||||| | |||||| |||| |||||||||| |
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| T |
50910548 |
ttgataag-tatcttggatctaagctcacaa |
50910577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 225
Target Start/End: Complemental strand, 38036470 - 38036314
Alignment:
| Q |
67 |
aacaatatctaaattttcttg---agttattatgatgacataagggtatttcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggcct |
163 |
Q |
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|||||||||||||||| |||| |||| ||||||| |||||||||| | ||||||| | | ||||| || |||||||||||||| ||||||| | |
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| T |
38036470 |
aacaatatctaaatttccttggttttttataatgatgagataagggtatgtgctgtaagcagtatcgag-atcgaatattcctgcaaatttctctgac-- |
38036374 |
T |
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| Q |
164 |
aataataaaacattcagccaaattataatagttgataggttatcttagatccaagctcacaa |
225 |
Q |
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||||||| ||||||||||||| ||| ||||| ||| | |||||| |||| |||||||||| |
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| T |
38036373 |
-ataataacacattcagccaaactat-atagtgtataagctatcttggatcaaagctcacaa |
38036314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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