View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16167_low_7 (Length: 248)
Name: NF16167_low_7
Description: NF16167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16167_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 35082684 - 35082904
Alignment:
| Q |
18 |
aaagtagcctcagatgtagcagtgaaaatgaaatcgtgcccaaccttaaaatggaaaagttttaatgatcacaaataaacaaagctccagaaggcaaaca |
117 |
Q |
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| T |
35082684 |
aaagtagcctcagatgtagcagtgaaaatgaaatcgtgcccaaccttaaaatggaaaggttttaatgatcacaaataaacaaagctccagaaggcaaaca |
35082783 |
T |
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| Q |
118 |
cactcagtatgaggtgtgagtgggaacatgtcaactggttgtaggcttattagcttataatcaacgtcccgtgcacattggcaggattgcatgacacatg |
217 |
Q |
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| T |
35082784 |
cactcagtatgaggtgtgagtgggaacatgtcaactggttgtaggcttattagcttataatcaacgtcccgtgcacattggcaggattgcatgacacatg |
35082883 |
T |
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| Q |
218 |
cactatgcgaggtgccctatg |
238 |
Q |
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| T |
35082884 |
cactatgcgaggtgccctatg |
35082904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 43 - 177
Target Start/End: Original strand, 43195146 - 43195280
Alignment:
| Q |
43 |
aaatgaaatcgtgcccaaccttaaaatggaaaagttttaatgatcacaaataaacaaagctccagaaggcaaacacactcagtatgaggtgtgagtggga |
142 |
Q |
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| T |
43195146 |
aaatgagatggtgcccaaccttgaaatgtgaaggtttaaatgatcacagatcaacaaagctccaaaaggcaaacacactcgatatgaggtgtgtgtggga |
43195245 |
T |
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| Q |
143 |
acatgtcaactggttgtaggcttattagcttataa |
177 |
Q |
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| T |
43195246 |
acatgtcaactggctgtaggcttattagcttataa |
43195280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 43195393 - 43195456
Alignment:
| Q |
174 |
ataatcaacgtcccgtgcacat-tggcaggattgcatgacacatgcactatgcgaggtgcccta |
236 |
Q |
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|||||||| ||| ||||||||| | ||||||||||||||||||| |||||||||||| |||||| |
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| T |
43195393 |
ataatcaaggtcacgtgcacatgtagcaggattgcatgacacatacactatgcgaggcgcccta |
43195456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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