View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16168_low_2 (Length: 246)
Name: NF16168_low_2
Description: NF16168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16168_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 47737941 - 47737728
Alignment:
| Q |
15 |
gaacaatagagagacatactataaattgnnnnnnnttgctactatacaaagatattacccaacagcagccatccggtttttcaactcgttatctgtgtcg |
114 |
Q |
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| T |
47737941 |
gaacaatagagagacatactataaattgaaaaaa-ttgctactatacaaaagtattacccaacagcagccatccggtttttcaactcgttatctgtgtcg |
47737843 |
T |
|
| Q |
115 |
tatatatagagttgtgcaaacttggggctgttaccaggtgttgggagtaaactccctattcgatggtaattttctccgtttaagacatatattggtggag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47737842 |
tatatatagagttgtgcaaacttggggctgttaccaggtgttgggagtaaactccctattcgatggtaattttctccgtttaagacatatattggtggag |
47737743 |
T |
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| Q |
215 |
cgttgccattattat |
229 |
Q |
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||||||||||||||| |
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| T |
47737742 |
cgttgccattattat |
47737728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 15 - 229
Target Start/End: Original strand, 18007693 - 18007906
Alignment:
| Q |
15 |
gaacaatagagagacatactataaattgnnnnnnnttgctactatacaaagatattacccaacagcagccatccggtttttcaactcgttatctgtgtcg |
114 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18007693 |
gaacaatagagaggcatactataaattgaaaaaa-ttgctattatacaaagatattacccaacagcagccatccggtttttcaactcgttatctgtgtcg |
18007791 |
T |
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| Q |
115 |
tatatatagagttgtgcaaacttggggctgttaccaggtgttgggagtaaactccctattcgatggtaattttctccgtttaagacatatattggtggag |
214 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18007792 |
tatatatagagccgtgcaaacttggggccgttaccaggtgttgggagtaaactccttattcgattgtaattttctccgtttaagacatatattggtggag |
18007891 |
T |
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| Q |
215 |
cgttgccattattat |
229 |
Q |
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|||| |||||||||| |
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| T |
18007892 |
cgttaccattattat |
18007906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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