View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16169_high_3 (Length: 367)
Name: NF16169_high_3
Description: NF16169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16169_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 4 - 361
Target Start/End: Original strand, 4440416 - 4440773
Alignment:
| Q |
4 |
gtgagatgaaagaccacaaacacatcaatattagcagaaaacttctatgtaccacactgccatgcttaggaggcaagtcccttcatttgagaatcatttg |
103 |
Q |
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| T |
4440416 |
gtgacatgaacgaccacaaacacatcaatattagcagaaaacttctatgtaccacactgccatgcttaggaggcaagtcccttcatttgagaatcatttg |
4440515 |
T |
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| Q |
104 |
aggaacattggaaagcaatgcatttctccaccctattggaactttgtaggactattgcttctcttgttgccaatgctattgtgccaggaacaattaacat |
203 |
Q |
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| T |
4440516 |
aggaacattggaaagcaatgcatttctccaccctattggaactttgtaggattattgcttctcttgttgccaatgctattgtgccaggaataattaacat |
4440615 |
T |
|
| Q |
204 |
cctatctaattctttagactaattaaattcaacaaattcaggcctgttataagtgcacctactaacatagacaaattgagtgacggtattgtaacaacga |
303 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4440616 |
cctatctaattctttagacaaattaaattcaacaaattcaggcctgttataagtgcacctactaacatagacaaattgagtgacggtattgtaaaaacga |
4440715 |
T |
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| Q |
304 |
tatcaggtgattctactggcggtgtgcaatcagctagtgattagatgaggatgatgtc |
361 |
Q |
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| T |
4440716 |
tgtcaggtggttctactggcggtgtgcaatcagctagtgattagatgaggatgttgtc |
4440773 |
T |
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