View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16169_high_4 (Length: 355)
Name: NF16169_high_4
Description: NF16169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16169_high_4 |
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| [»] scaffold0770 (1 HSPs) |
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| [»] scaffold0029 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 336
Target Start/End: Complemental strand, 50566266 - 50565939
Alignment:
| Q |
10 |
aatataaagtagtttaatatgttaattataa---gtttaaatattagatgtgcggtcttcttctaggcttgaatgtgcccaacttttaatgtaaagaaag |
106 |
Q |
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| T |
50566266 |
aatataaattagtttaatgtgttaattatataaggtttaaatattagatgtgcattcttcttctagacttaaatgtgcccaacttttaatgtaaagaaag |
50566167 |
T |
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| Q |
107 |
ggggaatgatgcaccctctttaaatgttttattatgggtttattttgagttcaaccttttaaat-tattcttagcctttcaagttcacaccgactaataa |
205 |
Q |
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| T |
50566166 |
gtgaaaggatgcaccctcttt-aatgttttattgtgggtttattttgagttcaaccttttaaatgtattcttagcctttcaagttcacacaaactaatga |
50566068 |
T |
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| Q |
206 |
ctgctgcataaattgattataaatatgtcttatgaacaactccttaatacatatgagtgtatgaaatttcaatttgagagggtatgtaagagtattgtat |
305 |
Q |
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| T |
50566067 |
ctaccgcataaattgattataaatatgtcttatgaacaactctttagtac--atgagtatatgaaatttcaatttgagagggtatgtaagagtattgtag |
50565970 |
T |
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| Q |
306 |
aagaagaatttttagaaacttatgtgatctt |
336 |
Q |
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| T |
50565969 |
aagaagaattcttaaaaaattatgttatctt |
50565939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 36 - 336
Target Start/End: Complemental strand, 50514040 - 50513762
Alignment:
| Q |
36 |
tataagtttaaatattagatgtgcggtcttcttctaggcttgaatgtgcccaacttttaatgtaaagaaagggggaatgatgcaccctctttaaatgttt |
135 |
Q |
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| T |
50514040 |
tataagtttaaatattagatgtgcattcttcttctagacttaaatgtgcccaacttttaatgtaaagaaaggtgaaaggatgcaccctcttt-aatgttt |
50513942 |
T |
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| Q |
136 |
tattatgggtttattttgagttcaaccttttaaa-ttattcttagcctttcaagttcacaccgactaataactgctgcataaattgattataaatatgtc |
234 |
Q |
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| T |
50513941 |
tattgtggatttattttgagttcaaccttttaaatttattcttagcctttcaagttcacacagactaata----------------------aatatgtc |
50513864 |
T |
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| Q |
235 |
ttatgaacaactccttaatacatatgagtgtatgaaatttcaatttgagagggtatgtaagagtattgtataagaagaatttttagaaacttatgtgatc |
334 |
Q |
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| T |
50513863 |
ttatgaacaactctttagtacatatgagtatatgaaatttcaatttgagagggtatgtaagagtattgttgaagaagaactcttaaaaacttatgtgatc |
50513764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 38924681 - 38924568
Alignment:
| Q |
10 |
aatataaagtagtttaatatgttaattataagtttaaatattagatgtgcggtcttcttctaggcttgaatgtgcccaacttttaatgtaaagaaagggg |
109 |
Q |
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| T |
38924681 |
aatataaattagtttaatacgttaattataagtttaaatattagatgtgcggtcttcttctaggtttgaatgtgcccaacttttaatgtaaagaaaggga |
38924582 |
T |
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| Q |
110 |
gaatgatgcaccct |
123 |
Q |
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|||| |||||||| |
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| T |
38924581 |
aaatgttgcaccct |
38924568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 288 - 336
Target Start/End: Complemental strand, 38924568 - 38924520
Alignment:
| Q |
288 |
tatgtaagagtattgtataagaagaatttttagaaacttatgtgatctt |
336 |
Q |
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| T |
38924568 |
tatgtaagagtattgtataagaagaatttttaaaaacttatgtgatctt |
38924520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0770 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0770
Description:
Target: scaffold0770; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 4518 - 4586
Alignment:
| Q |
238 |
tgaacaactccttaatacata-tgagtgtatgaaatttcaatttgagagggtatgtaagagtattgtataagaa |
310 |
Q |
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| T |
4518 |
tgaacaactccttagtacataatgagtgtatgaaatttcaatttgagagg-----taagagtattgtagaagaa |
4586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 102822 - 102890
Alignment:
| Q |
238 |
tgaacaactccttaatacata-tgagtgtatgaaatttcaatttgagagggtatgtaagagtattgtataagaa |
310 |
Q |
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| T |
102822 |
tgaacaactccttagtacataatgagtgtatgaaatttcaatttgagagg-----taagagtattgtagaagaa |
102890 |
T |
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