View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16169_low_1 (Length: 612)
Name: NF16169_low_1
Description: NF16169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16169_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 15 - 607
Target Start/End: Complemental strand, 50229096 - 50228505
Alignment:
| Q |
15 |
gaaacaattaaggatannnnnnnaggttgtgaagtttttagtaatgtttggaatggcgtttgtcggtggttgggtattgttttgtgaacccagttgacat |
114 |
Q |
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| T |
50229096 |
gaaacaattaaggatatttttttaggttgtgaagtttttagtaatgtttggaatggcgtttgtcggtggttgggtattgttttgtgaacccagttgacat |
50228997 |
T |
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| Q |
115 |
tggagagcatgctttacaattttgtggtgcttacttgtttagaaaggaattttgtatgtgttttcaggcaatttggatgacatgtatttgaattatttgg |
214 |
Q |
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| T |
50228996 |
tggagagcatgcttta-aattttgtggtgcttacttgtttagaaaggaattttgtatgtgttttcaggcaatttggatgacatgtatttgaattatttgg |
50228898 |
T |
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| Q |
215 |
aaagaacataattcaagaattttttgtaggaaataagaatctttcaagcagctattggatcgtatcaaactccaatcatggtagtgtttgaacaatcata |
314 |
Q |
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| T |
50228897 |
aaagaacataattcaagaattttttgtaggaaataagaatctttcaagcagctattggatcgtatcaaactccaatcatggtagtgtttgaacaatcata |
50228798 |
T |
|
| Q |
315 |
gattgatttttgttgtagattttcattcttggtggattgaagggatgattgttaatacttaatatagttttttagcagcgagaggtatattatagtaaca |
414 |
Q |
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| T |
50228797 |
gattgatttttgttgtagattttcattcttggtggattgaagggatgattgttaatacttaatatagttttttagcagcgggaggtatattatagtaaca |
50228698 |
T |
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| Q |
415 |
gtatcgttcaaaattcaaaaatgtcgatgaggtagatgagatgacaaacatatgctctcattcgcaactgcaacaacgtctctccaattcaggttgttct |
514 |
Q |
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| T |
50228697 |
gtatcgttcaaaattcaaaaatgtcgatgaggtagatgagatgacaaacatatgctctcatttgcaactgcaacaacgtctctccaattcaggttgttct |
50228598 |
T |
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| Q |
515 |
tctctcacaatcaacaactactacttattcttccccctctaagattctttccttgagtttccaatatcattaacaaccctagattcttctctc |
607 |
Q |
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| T |
50228597 |
tctctcacaatcaacaactactacttattcttccccctctaagattctttccctgagtttccaatatcattaacaaccctagattcttctctc |
50228505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 42 - 177
Target Start/End: Complemental strand, 39380798 - 39380661
Alignment:
| Q |
42 |
tgtgaagtttttagtaatgtttggaatggcgtttgtcggtggttgggta-ttgttttgtgaacccagttgacattggagagcatgctttacaa-ttttgt |
139 |
Q |
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| T |
39380798 |
tgtgatgtttttagtaatgtttggaatggtgtttttcgatggttgggtatttgttttgagaatccaattgacaatggagagcttgctctacaatttttgt |
39380699 |
T |
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| Q |
140 |
ggtgcttacttgtttagaaaggaattttgtatgtgttt |
177 |
Q |
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| T |
39380698 |
ggtgcttatatgttcagaaagggaatttgtatgtgttt |
39380661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 252 - 291
Target Start/End: Complemental strand, 39380630 - 39380590
Alignment:
| Q |
252 |
aatctttcaa-gcagctattggatcgtatcaaactccaatc |
291 |
Q |
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| T |
39380630 |
aatctttcaaagcagctattggatcgtatcaaacttcaatc |
39380590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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