View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16169_low_2 (Length: 382)
Name: NF16169_low_2
Description: NF16169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16169_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 44683794 - 44683440
Alignment:
| Q |
13 |
aaaattctatgataccaatgtattcttctattttaacaaaatatttgttgtttttagaacactaggttgagtctgattcaaccttacaaaatcgattttt |
112 |
Q |
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| T |
44683794 |
aaaattctatgataccaatgtattcttctattttaacaaaatatttgttgtttttagaacattaggttcagtttaattcaaccttacaaaatcgattttt |
44683695 |
T |
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| Q |
113 |
aaggtgaaaaatgtcatcctttacattacttacgaaaaacattttcatataggaaaaagtattaacacaactaattgaatgaaacttattcaaatttaat |
212 |
Q |
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| T |
44683694 |
aaggtgaaaaatgtcctcctttacattactcacgaaaaacattttcatataggaaaaagtattaacacaactaattgaatgaaacttattcaaatttaat |
44683595 |
T |
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| Q |
213 |
tgaaaactatgattatgtagaattcttccctcaagcaaggcttcgtgtttaatttaaggatataccgtaaatgaatgattacttgatttcatctaaaata |
312 |
Q |
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| T |
44683594 |
tgaaaactatgattatgtagaattcttaactcaagcaaggcttcgtgtttaatttaagaatataccgtaaatgaatgattacttgatttcatctaaaata |
44683495 |
T |
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| Q |
313 |
ttgttttggt---gatgttacaggctctaagggttagcttcaagaaacctattgg |
364 |
Q |
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| T |
44683494 |
ttgttttggtgatgatgttacaggctctaaaggttagcttcaagaaacctattgg |
44683440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 361
Target Start/End: Original strand, 29357453 - 29357512
Alignment:
| Q |
302 |
catctaaaatattgttttggtgatgttacaggctctaagggttagcttcaagaaacctat |
361 |
Q |
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| T |
29357453 |
catctaaaattttattttggtgattttataggctctaaggattagcttcaagaaacctat |
29357512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 361
Target Start/End: Original strand, 29341426 - 29341485
Alignment:
| Q |
302 |
catctaaaatattgttttggtgatgttacaggctctaagggttagcttcaagaaacctat |
361 |
Q |
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|||||||||| || |||||||||| | ||||||||||| ||||||||||||||||||| |
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| T |
29341426 |
catctaaaattttattttggtgattgtgtaggctctaaggattagcttcaagaaacctat |
29341485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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