View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16169_low_5 (Length: 343)
Name: NF16169_low_5
Description: NF16169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16169_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 12 - 327
Target Start/End: Original strand, 17433722 - 17434037
Alignment:
| Q |
12 |
atgaactagtgttatgtttgtgaaagtgagattgaaacaaattataaatgttgattccttgtagtatagagactatatgttcacccaatcaacatatcaa |
111 |
Q |
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| T |
17433722 |
atgaactagtgttatgtttttgaaagtgagattgaaacaaattataaatgttgattccttgtagtatagagactatatgttcacccaatcaacatatcaa |
17433821 |
T |
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| Q |
112 |
tgaccgttagatcaagttcagacaatcctagattccaaactcggtattttggatttaaaaacaatcaaaatatgtgtattttatgaattcttcgattttg |
211 |
Q |
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| T |
17433822 |
tgaccgttagatcaagttcagacaatcctagattccaaactcggtattttggatttaaaaacaatcaaaatatgtgtattttatgaattcttcgattttg |
17433921 |
T |
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| Q |
212 |
atccaacaatcactgattcattcactgtatgaatgcagggtatcccaactacacggaatccatttcaacaaacaacatgattcttgatgaaatcatttac |
311 |
Q |
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| T |
17433922 |
atccaacaatcactgattcattcactgcatgaatgcagggtatcccaactacacggaatccatttcaacaaacaacatgattcttgatgaaatcatttac |
17434021 |
T |
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| Q |
312 |
cttacaatcatgatct |
327 |
Q |
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| T |
17434022 |
cttacaatcatgatct |
17434037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 30 - 327
Target Start/End: Original strand, 17454840 - 17455137
Alignment:
| Q |
30 |
tgtgaaagtgagattgaaacaaattataaatgttgattccttgtagtatagagactatatgttcacccaatcaacatatcaatgaccgttagatcaagtt |
129 |
Q |
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| T |
17454840 |
tgtgaaagtgagattgaaataaattataaatattgactacttgtagtctagagactttacgttcacccaatcaacatatcaatgactattagatcaagtt |
17454939 |
T |
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| Q |
130 |
cagacaatcctagattccaaactcggtattttggatttaaaaacaatcaaaatatgtgtattttatgaattcttcgattttgatccaacaatcactgatt |
229 |
Q |
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| T |
17454940 |
cagacgattctagattccaaactcggtattttggatttaaaaacaatcaaaatttgtatattttgtgaactttccggttttgatccaacaatcactgatc |
17455039 |
T |
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| Q |
230 |
cattcactgtatgaatgcagggtatcccaactacacggaatccatttcaacaaacaacatgattcttgatgaaatcatttaccttacaatcatgatct |
327 |
Q |
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| T |
17455040 |
cattcagtgcgtgaatgcatggtatcccaactacgcggaatccattttcacaaacaacaagatttttgatgaaatcatttaccttacaatcatgatct |
17455137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 326
Target Start/End: Original strand, 38214390 - 38214483
Alignment:
| Q |
236 |
ctgtatgaatgcagggtat---cccaactacacggaatccatttcaacaaacaacatgattcttgatgaaatcatttaccttacaatcatgatc |
326 |
Q |
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| T |
38214390 |
ctgtgtgaatgcagggtattctcccaactacatggaatccatttccacaaactactagtttcttgatgaattcatttaccttgcaatcatgatc |
38214483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 285
Target Start/End: Original strand, 38238266 - 38238397
Alignment:
| Q |
155 |
gtattttggatttaaaaacaatcaaaatatgtgtattttatgaattcttcgattttgatccaacaat-cactgattcattcactgtatgaatgcagggta |
253 |
Q |
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||||||||||||| | ||||||| |||| ||| |||||| |||||| | ||| |||||||||| | ||||||| ||| | || ||||||||||| | |
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| T |
38238266 |
gtattttggattttagaacaatcgaaatctgtatattttgtgaattgtctgatcctgatccaacagtacactgatggattgattgcgtgaatgcagggca |
38238365 |
T |
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| Q |
254 |
tcccaactacacggaatccatttcaacaaaca |
285 |
Q |
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| T |
38238366 |
tcccaactacacggaacccatttcgacaaaca |
38238397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 327
Target Start/End: Original strand, 38248454 - 38248522
Alignment:
| Q |
259 |
actacacggaatccatttcaacaaacaacatgattcttgatgaaatcatttaccttacaatcatgatct |
327 |
Q |
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| T |
38248454 |
actacacggaatctatttccacaaactaaatgtttcttgatgaatgcatttaccttgcaatcatgatct |
38248522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 323
Target Start/End: Original strand, 38226829 - 38226903
Alignment:
| Q |
248 |
agggtatcccaactacacggaatccatttcaacaaacaacatgattcttgatgaaatcatttaccttacaatcatg |
323 |
Q |
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| T |
38226829 |
agggtagcccaactacacggaatctatttctaaaaacta-atgtttcttaatgaattcatttaccttgcaatcatg |
38226903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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