View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16169_low_7 (Length: 236)
Name: NF16169_low_7
Description: NF16169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16169_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 44186768 - 44186552
Alignment:
| Q |
2 |
catgtccaacccacctatacttggaacatactaatgaataaaataaattccatgaggttcaaacaaagatattttattcattataatggcaacagtttcc |
101 |
Q |
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| T |
44186768 |
catgtccaacccacctatacttggaacatactaataaataaaataaattccatgaggttcaaacaaagatattttattcattataatggcaacagtttcc |
44186669 |
T |
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| Q |
102 |
aaaatgtacactattatttctataggaaaattgagggcattcagtaaagacaaaagaccatgcatacaattggagtcaaaagaacaatatgcagtaggaa |
201 |
Q |
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| T |
44186668 |
aaaatgtacac---tatttctataggaaaattgagggcattcagtaaagacaaaagaccatgcatacaattggagtcaaaagaacaatatgcagtaggaa |
44186572 |
T |
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| Q |
202 |
agatagtagagcattgaaat |
221 |
Q |
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|||||| ||||||||||||| |
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| T |
44186571 |
agatagaagagcattgaaat |
44186552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 221
Target Start/End: Complemental strand, 4878607 - 4878436
Alignment:
| Q |
49 |
ttccatgaggttcaaacaaagatattttattcattataatggcaaca-gtttccaaaatgtacactattatttctataggaaaattgagggc-attcagt |
146 |
Q |
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|||||||||||||||| | |||| |||||||||||||| || ||| | ||||||||||||||| ||||| |||| | ||||||| | || ||||||| |
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| T |
4878607 |
ttccatgaggttcaaaaagagatgttttattcattatattgacaaaaagtttccaaaatgtacgctatt---tctacaagaaaattcaaagccattcagt |
4878511 |
T |
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| Q |
147 |
aaagacaaaagaccatgcatacaattggagtcaaaagaacaatatgcagtaggaaagatagtagagcattgaaat |
221 |
Q |
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| T |
4878510 |
aaagaccaaagaccatacatacaattggaatcataagaacaatatgcaatatgaaagagagcagagcattgaaat |
4878436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 1327795 - 1327743
Alignment:
| Q |
169 |
aattggagtcaaaagaacaatatgcagtaggaaagatagtagagcattgaaat |
221 |
Q |
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||||||| |||||||| ||||||||| |||| |||| |||||||||||||||| |
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| T |
1327795 |
aattggaatcaaaagaccaatatgcaataggtaagagagtagagcattgaaat |
1327743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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