View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1616_low_1 (Length: 823)

Name: NF1616_low_1
Description: NF1616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1616_low_1
NF1616_low_1
[»] chr3 (13 HSPs)
chr3 (444-807)||(10751774-10752137)
chr3 (8-268)||(10752471-10752731)
chr3 (299-445)||(10752164-10752313)
chr3 (444-622)||(19667663-19667841)
chr3 (298-388)||(7937446-7937535)
chr3 (298-375)||(7638885-7638962)
chr3 (444-748)||(7937053-7937356)
chr3 (567-657)||(25280706-25280796)
chr3 (549-657)||(12215197-12215305)
chr3 (569-612)||(21478048-21478091)
chr3 (298-388)||(30188542-30188632)
chr3 (339-388)||(19667522-19667571)
chr3 (298-363)||(21477741-21477806)
[»] chr6 (12 HSPs)
chr6 (487-801)||(29361190-29361504)
chr6 (503-622)||(5675737-5675856)
chr6 (298-388)||(14781983-14782073)
chr6 (477-615)||(9756204-9756342)
chr6 (444-613)||(4103259-4103428)
chr6 (336-426)||(31848091-31848181)
chr6 (298-386)||(4103083-4103171)
chr6 (549-657)||(2854403-2854511)
chr6 (477-607)||(5195286-5195416)
chr6 (299-388)||(12607242-12607330)
chr6 (298-385)||(5675491-5675578)
chr6 (298-362)||(16477626-16477691)
[»] chr7 (21 HSPs)
chr7 (477-767)||(17262969-17263258)
chr7 (444-622)||(22358869-22359047)
chr7 (298-395)||(22681441-22681538)
chr7 (487-621)||(6458813-6458947)
chr7 (549-739)||(27293844-27294034)
chr7 (298-395)||(7566944-7567041)
chr7 (298-374)||(42453639-42453715)
chr7 (562-657)||(43655804-43655899)
chr7 (506-604)||(8752204-8752302)
chr7 (487-621)||(22681673-22681807)
chr7 (301-406)||(14241266-14241371)
chr7 (298-375)||(41242163-41242240)
chr7 (336-388)||(22358732-22358784)
chr7 (298-409)||(38889892-38890002)
chr7 (336-383)||(646070-646117)
chr7 (487-606)||(7567177-7567296)
chr7 (549-612)||(32215868-32215931)
chr7 (480-603)||(38651028-38651151)
chr7 (301-388)||(38651282-38651368)
chr7 (298-376)||(3091984-3092061)
chr7 (337-379)||(13778277-13778319)
[»] chr4 (23 HSPs)
chr4 (444-622)||(22322595-22322773)
chr4 (444-802)||(11821035-11821394)
chr4 (298-395)||(44546608-44546705)
chr4 (337-388)||(1463322-1463373)
chr4 (298-375)||(13159699-13159776)
chr4 (564-621)||(17185988-17186045)
chr4 (564-621)||(17187609-17187666)
chr4 (298-387)||(37013918-37014007)
chr4 (298-371)||(55284841-55284914)
chr4 (562-612)||(17712978-17713028)
chr4 (298-388)||(30036608-30036697)
chr4 (298-418)||(22322413-22322533)
chr4 (298-398)||(17186247-17186347)
chr4 (298-386)||(24010487-24010575)
chr4 (564-612)||(39868051-39868099)
chr4 (337-372)||(14546389-14546424)
chr4 (492-614)||(1463060-1463182)
chr4 (305-375)||(7272683-7272753)
chr4 (567-657)||(28708836-28708926)
chr4 (298-388)||(39868313-39868402)
chr4 (538-607)||(21141658-21141727)
chr4 (298-375)||(21141925-21142002)
chr4 (298-363)||(46191195-46191260)
[»] chr8 (6 HSPs)
chr8 (506-805)||(20877448-20877747)
chr8 (562-799)||(9017599-9017836)
chr8 (487-657)||(29934370-29934540)
chr8 (551-612)||(8304904-8304965)
chr8 (298-395)||(17936322-17936419)
chr8 (562-657)||(21313476-21313571)
[»] chr5 (28 HSPs)
chr5 (444-614)||(9194719-9194889)
chr5 (298-395)||(26397286-26397383)
chr5 (298-395)||(37268313-37268410)
chr5 (490-657)||(13390585-13390752)
chr5 (549-739)||(17696322-17696512)
chr5 (564-621)||(26397594-26397651)
chr5 (298-395)||(40632648-40632744)
chr5 (487-606)||(16119740-16119859)
chr5 (477-612)||(33651005-33651140)
chr5 (336-382)||(7123969-7124015)
chr5 (487-621)||(40632873-40633007)
chr5 (562-622)||(7125314-7125374)
chr5 (549-657)||(17946164-17946272)
chr5 (487-615)||(37268042-37268170)
chr5 (549-612)||(15504621-15504684)
chr5 (298-379)||(9194543-9194624)
chr5 (298-379)||(23257161-23257242)
chr5 (298-362)||(1585483-1585547)
chr5 (336-388)||(24251288-24251340)
chr5 (337-372)||(21269918-21269953)
chr5 (337-372)||(21271932-21271967)
chr5 (570-612)||(1585196-1585238)
chr5 (570-612)||(21270190-21270232)
chr5 (570-612)||(21272204-21272246)
chr5 (298-363)||(15504908-15504973)
chr5 (298-363)||(17696034-17696099)
chr5 (298-363)||(17945875-17945940)
chr5 (298-362)||(21825219-21825284)
[»] scaffold0074 (1 HSPs)
scaffold0074 (444-612)||(36224-36392)
[»] chr2 (11 HSPs)
chr2 (444-621)||(45468333-45468510)
chr2 (298-388)||(3376122-3376211)
chr2 (298-388)||(45701188-45701278)
chr2 (506-610)||(12915494-12915598)
chr2 (298-385)||(1206426-1206513)
chr2 (564-615)||(3375857-3375908)
chr2 (298-396)||(28543753-28543851)
chr2 (568-657)||(15140371-15140460)
chr2 (337-388)||(11123655-11123705)
chr2 (336-379)||(30515819-30515862)
chr2 (336-374)||(42184094-42184132)
[»] chr1 (11 HSPs)
chr1 (562-657)||(16423497-16423592)
chr1 (298-408)||(10349504-10349614)
chr1 (298-395)||(24509317-24509413)
chr1 (564-621)||(24509619-24509676)
chr1 (337-405)||(24308316-24308383)
chr1 (298-385)||(20819603-20819690)
chr1 (477-587)||(33567364-33567474)
chr1 (337-405)||(34505205-34505272)
chr1 (298-385)||(33855469-33855556)
chr1 (298-385)||(33925366-33925453)
chr1 (488-606)||(16632407-16632525)
[»] scaffold1251 (1 HSPs)
scaffold1251 (513-621)||(1319-1427)
[»] scaffold0461 (2 HSPs)
scaffold0461 (336-388)||(2195-2247)
scaffold0461 (336-388)||(9131-9183)
[»] scaffold0124 (1 HSPs)
scaffold0124 (336-388)||(40337-40389)
[»] scaffold0116 (2 HSPs)
scaffold0116 (562-657)||(42493-42588)
scaffold0116 (562-657)||(46413-46508)


Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 444 - 807
Target Start/End: Complemental strand, 10752137 - 10751774
Alignment:
Q  444 caatcatgaaaaccaaacgcaattggcactctcttcgaagattgccataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattacca 543  Q
    ||||||||||||| ||| |||||||||| | | ||||||||| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||    
T  10752137 caatcatgaaaacgaaatgcaattggcattgtgttcgaagatagccataaaaaggaattcagcttcactttttcaacaatactttgagggtcaattacca 10752038  T
Q  544 cagttttgaagacgcggctgtttctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaatggggagatctctgcaaacctgc 643  Q
    || |||| ||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| | ||||||| |||||||| |    
T  10752037 catttttaaagacgcggttgtttctctccttctatattgcccaaagacaagcaagccaaataactttaagatggaaatgagaagatctcggcaaacctac 10751938  T
Q  644 caaatgaataaacttgaagtagtggtccgaaatctagcctggaaagataaaaggaaagtcaagccagtgacaaactaaataccaaacacttccaaataag 743  Q
    |||||||||||| | ||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10751937 caaatgaataaattggaagtagtggttcgaaatcgagcctggaaagacaaaaggaaagtcaagccagtgacaaactaagtaccaaacacttccaaataag 10751838  T
Q  744 tcacaccaaacgaagagatgatcctctgtctcaatgagatcacatcctccaacacacaagttat 807  Q
    |||||||||| |||||||| |||| | ||||||||||||||||||||||||||| |||||||||    
T  10751837 tcacaccaaatgaagagataatccaccgtctcaatgagatcacatcctccaacatacaagttat 10751774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 268
Target Start/End: Complemental strand, 10752731 - 10752471
Alignment:
Q  8 tagcataggtctagcatccttttcggtttagatctgaatcttttgctaaacatttcagaggaaacagaatggtaaagcgtgcttactttgttatcatttc 107  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10752731 tagcatagctctagcatccttttcggtttagatctgaatcttttgctaaacatttcagaggaaacagaatggtaaagcgtgcttactttgttatcatttc 10752632  T
Q  108 ttgaatgtggaaagagaaacattcggtgtaaagcaaattaactaatgccgttataataggcgcgcaatacccatgatcacaacataatcaatggttttgc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10752631 ttgaatgtggaaagagaaacattcggtgtaaagcaaattaactaatgccgttataataggcgcgcaatacccatgatcacaacataatcaatggttttgc 10752532  T
Q  208 cataatatagggata--gggattaattacattttctttatttggtaaaaaacaaatacatttt 268  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||  |||||||||||    
T  10752531 cataatatagggatagggggattaattacattttctttatttggtaaaaa--aaatacatttt 10752471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 299 - 445
Target Start/End: Complemental strand, 10752313 - 10752164
Alignment:
Q  299 acaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgttataaaaacaag 398  Q
    ||||||||||||||||||| ||||| ||||| |||||||||||||||| | |||||||| |||||||||||||||||||||||||||||| |||||||||    
T  10752313 acaaatcaaaatagaatatattgctcaaatgtagagggattcaccccgtacaaggtgtgttaaaagtggtgaatcacccaaagtctgttacaaaaacaag 10752214  T
Q  399 acacctaacaaaggtg---ccactagaaaaataaacaaatttacatgaca 445  Q
    ||| ||||||||||||   |||| ||||||||||||||||||||||||||    
T  10752213 acatctaacaaaggtgccaccaccagaaaaataaacaaatttacatgaca 10752164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 444 - 622
Target Start/End: Original strand, 19667663 - 19667841
Alignment:
Q  444 caatcatgaaaaccaaacgcaattggcactctcttcgaagattgccataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattacca 543  Q
    ||||||||||| ||||||||||| || ||    ||||||||   |||||||||| |||||||||||||||||||||||||| |  |||  || || |||     
T  19667663 caatcatgaaagccaaacgcaataggaacaaagttcgaagagatccataaaaaggaattcaacttcactttttcaacaatactgagagaatcgataaccg 19667762  T
Q  544 cagttttgaagacgcggctgtttctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaatg 622  Q
    || |||| |||||   | |||||||||||||||| ||| |||||| ||| ||||  |||||||| || |||| ||||||    
T  19667763 catttttaaagacaaagttgtttctctccttccaaatttcccaaatacaagcaaatcaaataaccttgagataaaaatg 19667841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 298 - 388
Target Start/End: Complemental strand, 7937535 - 7937446
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgtta 388  Q
    ||||||||||||| |||| | ||||| ||| | |||| ||||| ||| ||| |||||||||| |||||| |||||||||||||||||||||    
T  7937535 aacaaatcaaaatggaatctattgctcaaaggcagagtgattccccctgcacaaggtgtgct-aaagtgatgaatcacccaaagtctgtta 7937446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 298 - 375
Target Start/End: Original strand, 7638885 - 7638962
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcac 375  Q
    ||||||||||||| |||||| || || ||| | | || ||||||||||||||||||||| ||||||||| ||||||||    
T  7638885 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccgcataaggtgtactaaaagtgatgaatcac 7638962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 444 - 748
Target Start/End: Complemental strand, 7937356 - 7937053
Alignment:
Q  444 caatcatgaaaaccaaacgcaattggcactctcttcgaagattgccataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattacca 543  Q
    ||||||||||||||||||||||| || |||   | ||||||  ||||||||||| || |  |||||||||| ||||||||| |   ||| ||||  ||||    
T  7937356 caatcatgaaaaccaaacgcaataggaactggatgcgaagaaagccataaaaaggaagt-tacttcactttatcaacaatactaaaaggatcaagaacca 7937258  T
Q  544 cagttttgaagacgcggctgtttctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaatggggagatctctgcaaacctgc 643  Q
    || ||||||||| || | ||||||| |||||||| |||||||||  ||| || | |||||| || ||||||| | |||| | | ||    |  | |||||    
T  7937257 catttttgaagatgcagttgtttctttccttccaaattgcccaactacaagccaaccaaatgaccttaagataagaatgagtacattgtggtcagcctgc 7937158  T
Q  644 caaatgaataaacttgaagtagtggtccgaaatctagcctggaaagataaaaggaaagtcaagccagtgacaaactaaataccaaacacttccaaataag 743  Q
    ||||||||||||||  || || || || | || | | || ||||| ||| |||| |   ||||||| |||||||| ||||||||  ||||||||||||||    
T  7937157 caaatgaataaactgaaaataatgatctgtaagcgatccaggaaaaatagaagggacaccaagccattgacaaaccaaataccatgcacttccaaataag 7937058  T
Q  744 tcaca 748  Q
    |||||    
T  7937057 tcaca 7937053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 567 - 657
Target Start/End: Original strand, 25280706 - 25280796
Alignment:
Q  567 ctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaatggggagatctctgcaaacctgccaaatgaataaact 657  Q
    |||||||||||||||||||||  ||| ||  |||||||||| |||| || |||||| | ||||||  ||||||| ||||||||| ||||||    
T  25280706 ctctccttccatattgcccaactacaagcctgccaaataacattaaaataaaaatgagtagatcttggcaaacccgccaaatgagtaaact 25280796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 549 - 657
Target Start/End: Complemental strand, 12215305 - 12215197
Alignment:
Q  549 ttgaagacgcggctgtttctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaatggggagatctctgcaaacctgccaaat 648  Q
    ||||| || ||| |||||| ||||||||||||||| |||| ||| |||||||||||||| |||| |   | ||| | ||||||  ||||||| |||||||    
T  12215305 ttgaaaacacggttgtttcgctccttccatattgctcaaacacaagcaagccaaataaccttaaaaaacacatgagtagatctaggcaaacccgccaaat 12215206  T
Q  649 gaataaact 657  Q
    || ||||||    
T  12215205 gagtaaact 12215197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 612
Target Start/End: Original strand, 21478048 - 21478091
Alignment:
Q  569 ctccttccatattgcccaaagacaggcaagccaaataactttaa 612  Q
    |||||||||||||||||||| ||| |||||||||||||| ||||    
T  21478048 ctccttccatattgcccaaatacaagcaagccaaataaccttaa 21478091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 298 - 388
Target Start/End: Complemental strand, 30188632 - 30188542
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgtta 388  Q
    ||||||| |||||||||||| ||||| ||| | |  | |||||||||||||  || |||||||| |||| |||||||| |||| |||||||    
T  30188632 aacaaataaaaatagaatatattgctcaaacgaaaggtgattcaccccgcactagatgtgctaagagtgatgaatcacacaaaatctgtta 30188542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 339 - 388
Target Start/End: Original strand, 19667522 - 19667571
Alignment:
Q  339 tcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgtta 388  Q
    |||||||||| ||||| ||||||||||| |||||||| ||||||| ||||    
T  19667522 tcaccccgcacaaggtatgctaaaagtgatgaatcactcaaagtcggtta 19667571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 363
Target Start/End: Original strand, 21477741 - 21477806
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaa 363  Q
    ||||||||||||| |||||| || || |||   |||| ||||||||||||| ||||||||||||||    
T  21477741 aacaaatcaaaatggaatatattactcaaagacagagtgattcaccccgcacaaggtgtgctaaaa 21477806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 4e-34; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 487 - 801
Target Start/End: Complemental strand, 29361504 - 29361190
Alignment:
Q  487 gccataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattaccacagttttgaagacgcggctgtttctctccttccatattgccca 586  Q
    ||||||| ||| |||| | |||||||||||| |||||||| || || ||||| | | ||  | ||||||| | | ||||||||||||||||||||| |||    
T  29361504 gccataagaaggaattaagcttcactttttctacaataatgtggggatcaataatcgcatctgtgaagactcagttgtttctctccttccatattggcca 29361405  T
Q  587 aagacaggcaagccaaataactttaagatgaaaatggggagatctctgcaaacctgccaaatgaataaacttgaagtagtggtccgaaatctagcctgga 686  Q
    || |||  ||||||||||||| ||||||| ||| || |   ||||| ||||||| ||||||||||||||||  |||||||| ||  ||||  | ||||||    
T  29361404 aacacaaacaagccaaataaccttaagataaaagtgtgtcaatctcggcaaacccgccaaatgaataaactaaaagtagtgatctaaaatggaacctgga 29361305  T
Q  687 aagataaaaggaaagtcaagccagtgacaaactaaataccaaacacttccaaataagtcacaccaaacgaagagatgatcctctgtctcaatgagatcac 786  Q
     | | ||||| |||  ||||||| ||||| |||| | ||||||| |||| |||||| ||||| | ||||||||||||||     |||||||||| | |||    
T  29361304 caaacaaaagaaaaaccaagccaatgacagactagaaaccaaactcttcaaaataaatcacatccaacgaagagatgatatgtcgtctcaatgaaaccac 29361205  T
Q  787 atcctccaacacaca 801  Q
    |||||||||||||||    
T  29361204 atcctccaacacaca 29361190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 503 - 622
Target Start/End: Original strand, 5675737 - 5675856
Alignment:
Q  503 caacttcactttttcaacaataatttgagggtcaattaccacagttttgaagacgcggctgtttctctccttccatattgcccaaagacaggcaagccaa 602  Q
    ||||||||| ||||| |||||| | | ||| |||||||||||| |||||||||  | | | ||||||||||||||||||||||| | |||||||||||||    
T  5675737 caacttcaccttttcgacaatattgtaaggatcaattaccacatttttgaagatacagttatttctctccttccatattgcccatacacaggcaagccaa 5675836  T
Q  603 ataactttaagatgaaaatg 622  Q
    ||||| ||||||| ||||||    
T  5675837 ataaccttaagataaaaatg 5675856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 298 - 388
Target Start/End: Original strand, 14781983 - 14782073
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgtta 388  Q
    ||||||||||||| |||||| ||||| ||| |  ||| |||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  14781983 aacaaatcaaaatggaatatattgctcaaaagaggagagattcaccccacacaaggtgtgctaaaagtggtgaatcacccaaagtctgtta 14782073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 477 - 615
Target Start/End: Complemental strand, 9756342 - 9756204
Alignment:
Q  477 ttcgaagattgccataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattaccacagttttgaagacgcggctgtttctctccttcc 576  Q
    ||||||||  ||||||||||| |||||| |||||| || |||||||||||  |||| ||||| ||| || |||| ||||| ||| |||||  ||||||||    
T  9756342 ttcgaagagagccataaaaaggaattcatcttcaccttgtcaacaataatgagaggatcaataaccgcatttttaaagacacggttgttttgctccttcc 9756243  T
Q  577 atattgcccaaagacaggcaagccaaataactttaagat 615  Q
    | |||| ||||| ||| |||||||||||||| |||||||    
T  9756242 aaattgtccaaatacaagcaagccaaataaccttaagat 9756204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 444 - 613
Target Start/End: Original strand, 4103259 - 4103428
Alignment:
Q  444 caatcatgaaaaccaaacgcaattggcactctcttcgaagattgccataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattacca 543  Q
    ||||||||||||| ||| |||||||| ||    ||||| ||  ||||||| ||| |||||| |||||| |||||||||||| | | ||| |||||||||     
T  4103259 caatcatgaaaactaaatgcaattggtacaaaattcgacgaaagccataagaaggaattcatcttcaccttttcaacaatattgtaaggatcaattaccg 4103358  T
Q  544 cagttttgaagacgcggctgtttctctccttccatattgcccaaagacaggcaagccaaataactttaag 613  Q
    || |||||||||  | | |||||||||||||||| |||| ||||| ||| |||||||| ||||| |||||    
T  4103359 catttttgaagatacagttgtttctctccttccaaattgtccaaacacaagcaagccatataaccttaag 4103428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 336 - 426
Target Start/End: Original strand, 31848091 - 31848181
Alignment:
Q  336 gattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgttataaa-aacaagacacctaacaaaggtgccactagaaaaa 426  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |||  ||||| |||||||  |||||||||| |||||||    
T  31848091 gattcaccccgcacaaggtgtgctaaaagtgatgaatcacccaaagtcagttacaaaccacaag-cacctaaagaaggtgccaccagaaaaa 31848181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 298 - 386
Target Start/End: Original strand, 4103083 - 4103171
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgt 386  Q
    ||||| ||||||| |||||| ||||| |||  || || ||||||||||||| |||| |||||||||| | |||||||||||||||||||    
T  4103083 aacaagtcaaaatggaatatattgctcaaaatgaaagtgattcaccccgcacaaggcgtgctaaaagcgatgaatcacccaaagtctgt 4103171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 657
Target Start/End: Original strand, 2854403 - 2854511
Alignment:
Q  549 ttgaagacgcggctgtttctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaatggggagatctctgcaaacctgccaaat 648  Q
    ||||| || |||||||||| |||||||||||||||||||| ||| ||||||||| |||| |||| |   | ||| | ||||||  ||||||| |||||||    
T  2854403 ttgaaaacacggctgtttcgctccttccatattgcccaaacacaagcaagccaagtaaccttaaaaaacacatgagtagatctaggcaaacccgccaaat 2854502  T
Q  649 gaataaact 657  Q
    || ||||||    
T  2854503 gagtaaact 2854511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 477 - 607
Target Start/End: Complemental strand, 5195416 - 5195286
Alignment:
Q  477 ttcgaagattgccataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattaccacagttttgaagacgcggctgtttctctccttcc 576  Q
    ||||||||  ||||||||||  | ||||||| |||  ||||||||||| |   ||| ||||| ||| || |||||||||  | | |||| ||||||||||    
T  5195416 ttcgaagaaagccataaaaaagagttcaactccacactttcaacaatactgaaaggatcaataaccgcatttttgaagatacagttgttcctctccttcc 5195317  T
Q  577 atattgcccaaagacaggcaagccaaataac 607  Q
    | |||||||||| ||| ||||||||||||||    
T  5195316 aaattgcccaaatacaagcaagccaaataac 5195286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 299 - 388
Target Start/End: Original strand, 12607242 - 12607330
Alignment:
Q  299 acaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgtta 388  Q
    |||||||||||| |||||  ||| | ||| | |||| ||||||||| ||| ||||||||||||||||| | ||||||||||||| |||||    
T  12607242 acaaatcaaaatggaataaattgttcaaaggcagagtgattcaccc-gcacaaggtgtgctaaaagtgataaatcacccaaagtatgtta 12607330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 298 - 385
Target Start/End: Original strand, 5675491 - 5675578
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctg 385  Q
    ||||||||||||| |||||| ||||  ||| |   || ||||||||||||| ||||||| ||||||| | |||||||| |||||||||    
T  5675491 aacaaatcaaaatggaatatattgcacaaaagagaagtgattcaccccgcacaaggtgtactaaaagcgatgaatcactcaaagtctg 5675578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 362
Target Start/End: Original strand, 16477626 - 16477691
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagg-gattcaccccgcataaggtgtgctaaa 362  Q
    ||||||||||||| |||||| ||||| ||| | | ||| ||||||||||||| |||||||||||||    
T  16477626 aacaaatcaaaatggaatatattgctcaaaagaaaaggtgattcaccccgcacaaggtgtgctaaa 16477691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 1e-31; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 477 - 767
Target Start/End: Complemental strand, 17263258 - 17262969
Alignment:
Q  477 ttcgaagattgccataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattaccacagttttgaagacgcggctgtttctctccttcc 576  Q
    |||||||||  |||||||||| ||||||||||||||||||||| || | | ||||| || |||||| || |||| || || | | ||||||| |||||||    
T  17263258 ttcgaagataaccataaaaaggaattcaacttcactttttcaagaacactgtgaggatcgattaccgcattttttaatacacagttgtttctatccttcc 17263159  T
Q  577 atattgcccaaagacaggcaagccaaataactttaagatgaaaatggggagatctctgcaaacctgccaaatgaataaacttgaagtagtggtccgaaat 676  Q
    |||||||||||  ||| ||||||||||| || |||| || || ||| | || |||| ||| |||| | | |||||||||||  | |||||| |||  |||    
T  17263158 atattgcccaagcacaagcaagccaaatgaccttaaaataaagatgagcagctctcggcatacct-caagatgaataaactgaatgtagtgatccttaat 17263060  T
Q  677 ctagcctggaaagataaaaggaaagtcaagccagtgacaaactaaataccaaacacttccaaataagtcacaccaaacgaagagatgatcc 767  Q
    | | |||||||||| ||||| |||| |||| || ||||| ||||| ||||||||||| | || ||| ||||| | ||||||||||||||||    
T  17263059 caatcctggaaagacaaaagaaaagccaagtcaatgacagactaagtaccaaacactcctaattaaatcacaaccaacgaagagatgatcc 17262969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 444 - 622
Target Start/End: Original strand, 22358869 - 22359047
Alignment:
Q  444 caatcatgaaaaccaaacgcaattggcactctcttcgaagattgccataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattacca 543  Q
    |||||||||||||| ||||| || || ||    ||||||||  ||||||||||| | |||| ||||||||||||||||||| |   ||| ||||| ||||    
T  22358869 caatcatgaaaacctaacgctataggaacaaaattcgaagaaagccataaaaaggagttcagcttcactttttcaacaatactgaaaggatcaataacca 22358968  T
Q  544 cagttttgaagacgcggctgtttctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaatg 622  Q
    |  ||||||||||   | |||||||||| || || |||||||||| ||| |||||||||||||| ||||||| ||||||    
T  22358969 cgcttttgaagacatagttgtttctctcttttcaaattgcccaaatacaagcaagccaaataaccttaagataaaaatg 22359047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 298 - 395
Target Start/End: Original strand, 22681441 - 22681538
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgttataaaaac 395  Q
    ||||||||||||| |||||| ||||| ||| | |||| ||||||||||||| ||||||||||||||  | |||||||| ||||||||| || ||||||    
T  22681441 aacaaatcaaaatggaatatattgctcaaaagaagagtgattcaccccgcacaaggtgtgctaaaaacgatgaatcactcaaagtctgatacaaaaac 22681538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 487 - 621
Target Start/End: Complemental strand, 6458947 - 6458813
Alignment:
Q  487 gccataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattaccacagttttgaagacgcggctgtttctctccttccatattgccca 586  Q
    ||||||||||  |||| |||||||| ||||| |||||| | | ||| ||||||||| || |||||||||  |   | || ||||||||||||||||| ||    
T  6458947 gccataaaaaagaatttaacttcaccttttcgacaatattgtaaggatcaattaccgcatttttgaagatacaattattcctctccttccatattgctca 6458848  T
Q  587 aagacaggcaagccaaataactttaagatgaaaat 621  Q
     | |||||||||||||||||| ||||||| |||||    
T  6458847 tacacaggcaagccaaataaccttaagataaaaat 6458813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 549 - 739
Target Start/End: Complemental strand, 27294034 - 27293844
Alignment:
Q  549 ttgaagacgcggctgtttctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaatggggagatctctgcaaacctgccaaat 648  Q
    ||||| || ||| |||||| |||||||||||||||||||| ||| |||||||||||||| |||| |   | ||| | ||||||  ||||||| |||||||    
T  27294034 ttgaaaacacggttgtttcgctccttccatattgcccaaacacaagcaagccaaataaccttaaaaaacacatgagtagatctaggcaaacccgccaaat 27293935  T
Q  649 gaataaacttgaagtagtggtccgaaatctagcctggaaagataaaaggaaagtcaagccagtgacaaactaaataccaaacacttccaaa 739  Q
    || ||||||  ||||| || |||  |||  | ||||||   | ||||| |||  ||||||||||||||| ||||  |||||||||||||||    
T  27293934 gagtaaactgaaagtaatgatccttaatagaacctggaggaacaaaagaaaacccaagccagtgacaaagtaaaacccaaacacttccaaa 27293844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 298 - 395
Target Start/End: Original strand, 7566944 - 7567041
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgttataaaaac 395  Q
    ||||||||||||| |||||| ||||| ||| | | |  ||||||||||||||||||||||||||||| |   |||||| |||||||||||| ||||||    
T  7566944 aacaaatcaaaatggaatatattgctcaaaggaaaaatgattcaccccgcataaggtgtgctaaaagcgacaaatcactcaaagtctgttacaaaaac 7567041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 298 - 374
Target Start/End: Complemental strand, 42453715 - 42453639
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatca 374  Q
    ||||||| ||||| |||||| ||||| ||| | | || ||||||||||||||||||||||||||||||| |||||||    
T  42453715 aacaaataaaaatggaatatattgctcaaacgaacagtgattcaccccgcataaggtgtgctaaaagtgatgaatca 42453639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 562 - 657
Target Start/End: Complemental strand, 43655899 - 43655804
Alignment:
Q  562 tgtttctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaatggggagatctctgcaaacctgccaaatgaataaact 657  Q
    |||||||||||||||| |||||||||| ||| |||||||||||||| || |||| ||| || | ||||||  |||| ||  |||| ||||||||||    
T  43655899 tgtttctctccttccaaattgcccaaacacaagcaagccaaataacctttagataaaagtgagtagatctaggcaaccccaccaattgaataaact 43655804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 506 - 604
Target Start/End: Complemental strand, 8752302 - 8752204
Alignment:
Q  506 cttcactttttcaacaataatttgagggtcaattaccacagttttgaagacgcggctgtttctctccttccatattgcccaaagacaggcaagccaaat 604  Q
    |||||||||||| |||||| | ||||| ||||| ||| |   | ||||||| ||| |||||||||| ||||| |||||||||| ||| |||||||||||    
T  8752302 cttcactttttctacaatattgtgaggatcaataaccgcttatgtgaagactcggttgtttctctctttccaaattgcccaaacacaagcaagccaaat 8752204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 487 - 621
Target Start/End: Original strand, 22681673 - 22681807
Alignment:
Q  487 gccataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattaccacagttttgaagacgcggctgtttctctccttccatattgccca 586  Q
    ||||||||||  ||| || |||||| ||||| |||||| | | ||| ||||||||   | ||||||| |  | ||| |||||||| ||||||| ||||||    
T  22681673 gccataaaaaagaatccagcttcaccttttcgacaatattgtaaggatcaattactgtatttttgaataaacagctatttctctcattccataatgccca 22681772  T
Q  587 aagacaggcaagccaaataactttaagatgaaaat 621  Q
     | |||||||||||||||||| ||||||| |||||    
T  22681773 tacacaggcaagccaaataaccttaagataaaaat 22681807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 301 - 406
Target Start/End: Complemental strand, 14241371 - 14241266
Alignment:
Q  301 aaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgttataaaaacaagac 400  Q
    ||||||||||  ||||| ||||| ||| | | || ||||||||||||| ||| ||||||||||||| |||||||| |||  ||||||| |||  || |||    
T  14241371 aaatcaaaatgaaatatattgctaaaacgaaaagtgattcaccccgcacaagatgtgctaaaagtgatgaatcacacaatatctgttacaaagtcatgac 14241272  T
Q  401 acctaa 406  Q
    ||||||    
T  14241271 acctaa 14241266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 298 - 375
Target Start/End: Original strand, 41242163 - 41242240
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcac 375  Q
    ||||||||||||| |||||| || || ||| | | || ||||||||||||| |||||||||||||| || ||||||||    
T  41242163 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccgcacaaggtgtgctaaaattgatgaatcac 41242240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 336 - 388
Target Start/End: Original strand, 22358732 - 22358784
Alignment:
Q  336 gattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgtta 388  Q
    |||||||||||||||||||||||||||||   |||||||||||| ||| ||||    
T  22358732 gattcaccccgcataaggtgtgctaaaagcaatgaatcacccaatgtcagtta 22358784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 298 - 409
Target Start/End: Complemental strand, 38890002 - 38889892
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgttataaa-aaca 396  Q
    ||||||| |||||||||||| ||||| ||| | |  | ||||||||||||| ||||||| || |||||| |||| ||||||| |||||||| ||| ||||    
T  38890002 aacaaattaaaatagaatatattgctcaaaagaaaggtgattcaccccgcacaaggtgtact-aaagtgatgaaacacccaacgtctgttacaaacaaca 38889904  T
Q  397 agacacctaacaa 409  Q
    || ||||||||||    
T  38889903 ag-cacctaacaa 38889892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 336 - 383
Target Start/End: Complemental strand, 646117 - 646070
Alignment:
Q  336 gattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtc 383  Q
    |||||| |||||||||| ||||||||||||| || |||||||||||||    
T  646117 gattcatcccgcataagatgtgctaaaagtgatgtatcacccaaagtc 646070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 487 - 606
Target Start/End: Original strand, 7567177 - 7567296
Alignment:
Q  487 gccataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattaccacagttttgaagacgcggctgtttctctccttccatattgccca 586  Q
    ||||||||||  |||||| |||||| ||||| |||||| | |  || ||||| |||||| ||||||||| ||   | |||||||| ||||||||||| ||    
T  7567177 gccataaaaaagaattcagcttcaccttttcgacaatattatacggatcaataaccacatttttgaagatgcaattatttctctctttccatattgctca 7567276  T
Q  587 aagacaggcaagccaaataa 606  Q
     | ||| |||||||||||||    
T  7567277 tacacaagcaagccaaataa 7567296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 549 - 612
Target Start/End: Original strand, 32215868 - 32215931
Alignment:
Q  549 ttgaagacgcggctgtttctctccttccatattgcccaaagacaggcaagccaaataactttaa 612  Q
    ||||| || ||| |||||| |||||||||||||||||||| ||| |||||||| ||||| ||||    
T  32215868 ttgaaaacacggttgtttcgctccttccatattgcccaaacacaagcaagccatataaccttaa 32215931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 480 - 603
Target Start/End: Complemental strand, 38651151 - 38651028
Alignment:
Q  480 gaagattgccataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattaccacagttttgaagacgcggctgtttctctccttccata 579  Q
    |||||| ||||||| ||| |||| | ||| ||||| |||||||||    |||| ||||| |||  | || ||||||| ||| ||||||||||||||||||    
T  38651151 gaagatagccataagaaggaatttagctttactttatcaacaatacggagaggatcaataaccgtatttgtgaagactcggttgtttctctccttccata 38651052  T
Q  580 ttgcccaaagacaggcaagccaaa 603  Q
    | ||||||| ||| ||||| ||||    
T  38651051 tagcccaaacacacgcaagtcaaa 38651028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 301 - 388
Target Start/End: Complemental strand, 38651368 - 38651282
Alignment:
Q  301 aaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgtta 388  Q
    |||||||||| |||||| ||| | ||| | | || ||||||||||||||||||| |||| |||||| ||||||||| || ||||||||    
T  38651368 aaatcaaaatggaatatattgttcaaaagcatagtgattcaccccgcataaggtatgct-aaagtgatgaatcacctaatgtctgtta 38651282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 298 - 376
Target Start/End: Complemental strand, 3092061 - 3091984
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacc 376  Q
    ||||||||||||||| |||| ||||| ||| | | || ||||||||| ||||||||||| || |||||| |||||||||    
T  3092061 aacaaatcaaaataggatatattgctcaaaagcaaagtgattcaccctgcataaggtgtact-aaagtgatgaatcacc 3091984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 337 - 379
Target Start/End: Original strand, 13778277 - 13778319
Alignment:
Q  337 attcaccccgcataaggtgtgctaaaagtggtgaatcacccaa 379  Q
    ||||| ||||||||||||||||||||| |||||||||| ||||    
T  13778277 attcatcccgcataaggtgtgctaaaaatggtgaatcatccaa 13778319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 1e-31; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 444 - 622
Target Start/End: Original strand, 22322595 - 22322773
Alignment:
Q  444 caatcatgaaaaccaaacgcaattggcactctcttcgaagattgccataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattacca 543  Q
    ||||| ||||||||||||| |||||| ||    ||||||||  ||||||||||| ||||||||||||||||||||||||||    |||| ||||| |||     
T  22322595 caatcgtgaaaaccaaacgaaattggtacaaaattcgaagagagccataaaaaggaattcaacttcactttttcaacaataccgagaggatcaataaccg 22322694  T
Q  544 cagttttgaagacgcggctgtttctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaatg 622  Q
    || ||||||||||     |||||||||||||||| |||||||||| ||| |||||||||||||||||||||| ||||||    
T  22322695 catttttgaagacataattgtttctctccttccaaattgcccaaatacaagcaagccaaataactttaagataaaaatg 22322773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 444 - 802
Target Start/End: Complemental strand, 11821394 - 11821035
Alignment:
Q  444 caatcatgaaaaccaaacgcaattggcactctcttcgaagattgccataaaaaga-aattcaacttcactttttcaacaataatttgagggtcaattacc 542  Q
    |||||||||||||||||||||||||| ||    || || ||  |||||||||| | |||||| |||||| ||||| |||||| | | | | |||||||||    
T  11821394 caatcatgaaaaccaaacgcaattggtacaaaatttgacgagagccataaaaaaagaattcagcttcaccttttcgacaatattgtaacgatcaattacc 11821295  T
Q  543 acagttttgaagacgcggctgtttctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaatggggagatctctgcaaacctg 642  Q
      | |||||||||  | | | ||||||||||| ||||||||||| | ||| ||||||||||||||  |||||| | |||| | |||||   | |||||      
T  11821294 gtatttttgaagatacagttatttctctcctttcatattgcccatacacaagcaagccaaataaccgtaagataagaatgtgaagatcgtggtaaaccca 11821195  T
Q  643 ccaaatgaataaacttgaagtagtggtccgaaatctagcctggaaagataaaaggaaagtcaagccagtgacaaactaaataccaaacacttccaaataa 742  Q
    ||||||||||||||| ||||||||| |||| || | | | |||||| | | ||| ||   ||||||||||||| | ||||||||| || || ||||| ||    
T  11821194 ccaaatgaataaactggaagtagtgatccgcaaccgaacttggaaaaacataagaaagaccaagccagtgacatagtaaataccagacgctcccaaacaa 11821095  T
Q  743 gtcacaccaaacgaagagatgatcctctgtctcaatgagatcacatcctccaacacacaa 802  Q
     ||||| |  |  |  ||||| ||| | ||||||||||   |||||||||||||||||||    
T  11821094 ttcacaacctaaaacaagatgctccgccgtctcaatgaagccacatcctccaacacacaa 11821035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 298 - 395
Target Start/End: Complemental strand, 44546705 - 44546608
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgttataaaaac 395  Q
    ||||||||||||| |||||| ||||| ||| | | || ||||||||||||| ||||||||||||||| |  ||||||| |||||||||||| ||||||    
T  44546705 aacaaatcaaaatggaatatattgctcaaaggaaaagtgattcaccccgcacaaggtgtgctaaaagcgacgaatcactcaaagtctgttacaaaaac 44546608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 337 - 388
Target Start/End: Complemental strand, 1463373 - 1463322
Alignment:
Q  337 attcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgtta 388  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  1463373 attcaccccgcataaggtgtgctaaaagtgatgaatcactcaaagtctgtta 1463322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 298 - 375
Target Start/End: Original strand, 13159699 - 13159776
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcac 375  Q
    ||||||||||||| |||||| ||||| ||| | | || ||||||||||||| || |||||||||||||||||||||||    
T  13159699 aacaaatcaaaatggaatatattgctcaaacgaaaagtgattcaccccgcacaaagtgtgctaaaagtggtgaatcac 13159776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 564 - 621
Target Start/End: Complemental strand, 17186045 - 17185988
Alignment:
Q  564 tttctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaat 621  Q
    ||||||||||||||||||||||| | |||||||||||||||||| ||||||| |||||    
T  17186045 tttctctccttccatattgcccatacacaggcaagccaaataaccttaagataaaaat 17185988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 564 - 621
Target Start/End: Original strand, 17187609 - 17187666
Alignment:
Q  564 tttctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaat 621  Q
    ||||||||||||||||||||||| | |||||||||||||||||| ||||||| |||||    
T  17187609 tttctctccttccatattgcccatacacaggcaagccaaataaccttaagataaaaat 17187666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 298 - 387
Target Start/End: Original strand, 37013918 - 37014007
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgtt 387  Q
    ||||||||||||| |||||| ||||| ||| |||||  | |||||||| |||||||| ||||||||| | |||||||| |||||||||||    
T  37013918 aacaaatcaaaatggaatatattgctcaaaaggagaatggttcaccccacataaggtatgctaaaagcgatgaatcactcaaagtctgtt 37014007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 298 - 371
Target Start/End: Original strand, 55284841 - 55284914
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaa 371  Q
    |||||||||||||| ||||| ||||| |||   | || ||||||||||||||||||||||||||||||||||||    
T  55284841 aacaaatcaaaataaaatatattgctgaaaataatagtgattcaccccgcataaggtgtgctaaaagtggtgaa 55284914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 562 - 612
Target Start/End: Original strand, 17712978 - 17713028
Alignment:
Q  562 tgtttctctccttccatattgcccaaagacaggcaagccaaataactttaa 612  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||| ||||    
T  17712978 tgtttctctccttccatattgcccaaacacaagcaagccaaataaccttaa 17713028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 298 - 388
Target Start/End: Complemental strand, 30036697 - 30036608
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgtta 388  Q
    ||||||||||||| |||||| ||||| |||||  ||   |||||||| |||||||||||||| |||| ||||||||||||||| |||||||    
T  30036697 aacaaatcaaaatggaatatattgctcaaatgaggaacaattcaccctgcataaggtgtgct-aaagaggtgaatcacccaaaatctgtta 30036608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 298 - 418
Target Start/End: Original strand, 22322413 - 22322533
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgttataaa-aaca 396  Q
    ||||||||||||| |||||  ||| | ||| | | || |||||| ||||||||||||||||||||| || |||||||| ||||||| |||| ||| ||||    
T  22322413 aacaaatcaaaatggaataaattgttcaaaagcaaagtgattcatcccgcataaggtgtgctaaaaatgatgaatcactcaaagtcggttacaaacaaca 22322512  T
Q  397 agacacctaacaaaggtgccac 418  Q
     | |||||||||||| ||||||    
T  22322513 tg-cacctaacaaagatgccac 22322533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 298 - 398
Target Start/End: Complemental strand, 17186347 - 17186247
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgttataaaaacaa 397  Q
    ||||||||||||| |||||| ||||| ||| | |||| |||||| |||||| ||||| ||||||||  | |||||||| ||||||||| || |||| |||    
T  17186347 aacaaatcaaaatggaatatattgctcaaaagaagagtgattcatcccgcacaaggtatgctaaaaacgatgaatcactcaaagtctgatacaaaatcaa 17186248  T
Q  398 g 398  Q
    |    
T  17186247 g 17186247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 298 - 386
Target Start/End: Complemental strand, 24010575 - 24010487
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgt 386  Q
    ||||||||||||| |||||| ||| | ||||| |||| ||||||||||||| ||||  ||||||||| | | |||||| ||||||||||    
T  24010575 aacaaatcaaaattgaatatattgttcaaatgaagagtgattcaccccgcacaaggcatgctaaaagcgataaatcactcaaagtctgt 24010487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 564 - 612
Target Start/End: Complemental strand, 39868099 - 39868051
Alignment:
Q  564 tttctctccttccatattgcccaaagacaggcaagccaaataactttaa 612  Q
    ||||||||||||||||||||||| | |||||||||||||||||| ||||    
T  39868099 tttctctccttccatattgcccatacacaggcaagccaaataaccttaa 39868051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 337 - 372
Target Start/End: Original strand, 14546389 - 14546424
Alignment:
Q  337 attcaccccgcataaggtgtgctaaaagtggtgaat 372  Q
    ||||||||||||||||||||||||||||||||||||    
T  14546389 attcaccccgcataaggtgtgctaaaagtggtgaat 14546424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 492 - 614
Target Start/End: Complemental strand, 1463182 - 1463060
Alignment:
Q  492 aaaaagaaattcaacttcactttttcaacaataatttgagggtcaattaccacagttttgaagacgcggctgtttctctccttccatattgcccaaagac 591  Q
    |||||| |||||  ||||||||||||||||||| |  |||| |||||  || || |||||||||| ||| |||||||||| || || |||| ||||   |    
T  1463182 aaaaaggaattctgcttcactttttcaacaatattgagaggatcaatacccgcatttttgaagacacggttgtttctctcttttcaaattgtccaagtgc 1463083  T
Q  592 aggcaagccaaataactttaaga 614  Q
    | |||||||||||||| ||||||    
T  1463082 aagcaagccaaataaccttaaga 1463060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 305 - 375
Target Start/End: Complemental strand, 7272753 - 7272683
Alignment:
Q  305 caaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcac 375  Q
    ||||||||||||| || || ||||  | || ||||||||||| |||||||||||||| |||||||||||||    
T  7272753 caaaatagaatatattactcaaattaatagtgattcaccccgtataaggtgtgctaacagtggtgaatcac 7272683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 567 - 657
Target Start/End: Complemental strand, 28708926 - 28708836
Alignment:
Q  567 ctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaatggggagatctctgcaaacctgccaaatgaataaact 657  Q
    |||||||||||||||||||||  ||| ||  |||||||||| |||| || |||||| | ||||||  ||||||| ||||||||| ||||||    
T  28708926 ctctccttccatattgcccaactacaagcctgccaaataacattaaaataaaaatgagtagatcttggcaaacccgccaaatgagtaaact 28708836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 298 - 388
Target Start/End: Complemental strand, 39868402 - 39868313
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgtta 388  Q
    ||||||||||||| |||||| ||||| ||| | |||| || |||||||||| ||||||||||||||  | |||||||| ||| ||||||||    
T  39868402 aacaaatcaaaatggaatatattgctgaaaagaagagtgactcaccccgcacaaggtgtgctaaaa-cgatgaatcactcaacgtctgtta 39868313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 538 - 607
Target Start/End: Complemental strand, 21141727 - 21141658
Alignment:
Q  538 ttaccacagttttgaagacgcggctgtttctctccttccatattgcccaaagacaggcaagccaaataac 607  Q
    |||||||| |||| ||||||||| ||||  | ||||||||||||||||||| |||  |||||||||||||    
T  21141727 ttaccacatttttcaagacgcggttgttcttttccttccatattgcccaaacacaatcaagccaaataac 21141658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 298 - 375
Target Start/End: Complemental strand, 21142002 - 21141925
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcac 375  Q
    |||||||||||||||||||| ||||| |||    ||| ||||||||||||| ||||  || |||||||||||||||||    
T  21142002 aacaaatcaaaatagaatatattgctcaaaccaggagtgattcaccccgcacaaggcatgttaaaagtggtgaatcac 21141925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 363
Target Start/End: Original strand, 46191195 - 46191260
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaa 363  Q
    ||||||||||||| |||||| ||||| ||| | | || ||||||||||||| || |||||||||||    
T  46191195 aacaaatcaaaatggaatatattgctcaaacgaaaagtgattcaccccgcacaatgtgtgctaaaa 46191260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 9e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 506 - 805
Target Start/End: Original strand, 20877448 - 20877747
Alignment:
Q  506 cttcactttttcaacaataatttgagggtcaattaccacagttttgaagacgcggctgtttctctccttccatattgcccaaagacaggcaagccaaata 605  Q
    |||||||||||| |||||| | ||||| ||||| ||||    | ||||||| ||| |||||||||||||||| |||||||||| ||| |||||||||||     
T  20877448 cttcactttttctacaatattgtgaggatcaataaccatttctgtgaagactcggttgtttctctccttccaaattgcccaaacacaagcaagccaaatt 20877547  T
Q  606 actttaagatgaaaatggggagatctctgcaaacctgccaaatgaataaacttgaagtagtggtccgaaatctagcctggaaagataaaaggaaagtcaa 705  Q
    || |||| || ||| || |  |||||| | || || |||| |||||||||||   ||||||| || | |||   || ||||   | ||||| |||  |||    
T  20877548 accttaaaataaaattgagttgatctcggtaatcccgccatatgaataaactaacagtagtgatctgcaatggtgcatggaccaacaaaagaaaaaccaa 20877647  T
Q  706 gccagtgacaaactaaataccaaacacttccaaataagtcacaccaaacgaagagatgatcctctgtctcaatgagatcacatcctccaacacacaagtt 805  Q
    ||||  ||||||||| || |||||| ||||||||||| ||||| | || ||| ||||| |||| ||||||| ||| | |||||| |||||||||||||||    
T  20877648 gccaaagacaaactagattccaaactcttccaaataaatcacatcgaatgaaaagatggtcctttgtctcactgaaaccacatcatccaacacacaagtt 20877747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 562 - 799
Target Start/End: Complemental strand, 9017836 - 9017599
Alignment:
Q  562 tgtttctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaatggggagatctctgcaaacctgccaaatgaataaacttgaa 661  Q
    |||||||||||||||||| |||||||| ||| |||||||||||||| ||||||| ||| || | || || | ||||||| ||||| ||||||||||   |    
T  9017836 tgtttctctccttccataatgcccaaacacaagcaagccaaataaccttaagataaaagtgtgtaggtcgcggcaaacccgccaagtgaataaactgtga 9017737  T
Q  662 gtagtggtccgaaatctagcctggaaagataaaaggaaagtcaagccagtgacaaactaaataccaaacacttccaaataagtcacaccaaacgaagaga 761  Q
    ||| || |||  ||   | ||||||   | ||||| |||  ||||||| ||||||||||||||||| |||||||||||| | || || |  | |||||||    
T  9017736 gtaatgatccttaacggaacctggaggaacaaaagaaaacccaagccaatgacaaactaaataccagacacttccaaatgattcgcatcctatgaagaga 9017637  T
Q  762 tgatcctctgtctcaatgagatcacatcctccaacaca 799  Q
    ||||||   || || || ||| ||||||||||||||||    
T  9017636 tgatccgtcgtttctattagaccacatcctccaacaca 9017599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 487 - 657
Target Start/End: Complemental strand, 29934540 - 29934370
Alignment:
Q  487 gccataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattaccacagttttgaagacgcggctgtttctctccttccatattgccca 586  Q
    ||||||||||  ||||||||||||| ||||| |||||| |  |||| ||||| |||  | | || ||||| |   | |||||||||||||||||||||||    
T  29934540 gccataaaaaagaattcaacttcaccttttctacaatactaagaggatcaataaccttattgttaaagacacaattatttctctccttccatattgccca 29934441  T
Q  587 aagacaggcaagccaaataactttaagatgaaaatggggagatctctgcaaacctgccaaatgaataaact 657  Q
    || ||| ||   |||||||||||| | || |||||| | ||||| | ||||||| ||||||||||||||||    
T  29934440 aatacacgcctaccaaataactttcaaataaaaatgagtagatcgcggcaaacccgccaaatgaataaact 29934370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 551 - 612
Target Start/End: Original strand, 8304904 - 8304965
Alignment:
Q  551 gaagacgcggctgtttctctccttccatattgcccaaagacaggcaagccaaataactttaa 612  Q
    |||||| ||| ||||||||||||||||||||||||||| ||| |||||||||||||| ||||    
T  8304904 gaagacacggttgtttctctccttccatattgcccaaacacaagcaagccaaataaccttaa 8304965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 298 - 395
Target Start/End: Complemental strand, 17936419 - 17936322
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgttataaaaac 395  Q
    |||||||||||||  ||||| ||||| ||| | | || ||||||||||||| ||||||||||||||| |  ||||||| |||||||||||| ||||||    
T  17936419 aacaaatcaaaatgaaatatattgctcaaaggaaaagtgattcaccccgcacaaggtgtgctaaaagcgacgaatcactcaaagtctgttacaaaaac 17936322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 562 - 657
Target Start/End: Complemental strand, 21313571 - 21313476
Alignment:
Q  562 tgtttctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaatggggagatctctgcaaacctgccaaatgaataaact 657  Q
    |||||| |||||||||||||||||||| ||| |||||||||||||| |||| |   | ||| | ||||||  ||||||| ||||||||| ||||||    
T  21313571 tgtttcgctccttccatattgcccaaacacaagcaagccaaataaccttaaaaaacacatgagtagatctaggcaaacccgccaaatgagtaaact 21313476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 9e-20; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 444 - 614
Target Start/End: Original strand, 9194719 - 9194889
Alignment:
Q  444 caatcatgaaaaccaaacgcaattggcactctcttcgaagattgccataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattacca 543  Q
    |||||||||||||||||||||| ||| ||    ||||| ||  ||||||||||| |||||| |||||| ||||| || ||| | ||||| |||||||||     
T  9194719 caatcatgaaaaccaaacgcaactggtacaaaattcgacgaaagccataaaaaggaattcagcttcaccttttcgactatattgtgaggatcaattaccg 9194818  T
Q  544 cagttttgaagacgcggctgtttctctccttccatattgcccaaagacaggcaagccaaataactttaaga 614  Q
    || |||||||||  | | |||||||||||||||| |||| ||||| ||| || ||||| ||||| ||||||    
T  9194819 catttttgaagatacagttgtttctctccttccaaattgtccaaacacaagcgagccagataaccttaaga 9194889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 298 - 395
Target Start/End: Original strand, 26397286 - 26397383
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgttataaaaac 395  Q
    ||||||||||||| |||||| ||||| ||| | |||| ||||||||||||| |||||||||||||| || |||||| | ||||||||| || ||||||    
T  26397286 aacaaatcaaaatggaatatattgctcaaaagaagagtgattcaccccgcacaaggtgtgctaaaaatgatgaatcgctcaaagtctgatacaaaaac 26397383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 298 - 395
Target Start/End: Complemental strand, 37268410 - 37268313
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgttataaaaac 395  Q
    ||||||||||||| |||||| ||||| ||| | | || ||||||||||| | |||||||||||||||||  ||||||| |||||||||||| ||||||    
T  37268410 aacaaatcaaaatggaatatattgctcaaaggaaaagtgattcaccccgtacaaggtgtgctaaaagtgacgaatcactcaaagtctgttacaaaaac 37268313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 490 - 657
Target Start/End: Original strand, 13390585 - 13390752
Alignment:
Q  490 ataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattaccacagttttgaagacgcggctgtttctctccttccatattgcccaaag 589  Q
    |||||||  ||||||||||||| ||||| |||||| |  |||| ||||| |||| | | || ||||| | | | |||||||| ||||||||||||||||     
T  13390585 ataaaaaagaattcaacttcaccttttctacaatactaagaggatcaataaccatattgttaaagacacagttatttctctcattccatattgcccaaat 13390684  T
Q  590 acaggcaagccaaataactttaagatgaaaatggggagatctctgcaaacctgccaaatgaataaact 657  Q
    ||| ||  ||||||||||||| | || |||||| | ||||| | ||| ||| ||||||||||||||||    
T  13390685 acaagcctgccaaataacttttaaataaaaatgagtagatcgcggcatacccgccaaatgaataaact 13390752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 549 - 739
Target Start/End: Original strand, 17696322 - 17696512
Alignment:
Q  549 ttgaagacgcggctgtttctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaatggggagatctctgcaaacctgccaaat 648  Q
    ||||| |||||| |||||| |||||||||||||||||||| ||| |||||||||||||| ||||||   | ||  | ||||||  ||||||| |||||||    
T  17696322 ttgaaaacgcggttgtttcgctccttccatattgcccaaacacaagcaagccaaataaccttaagaaacacataagtagatctaggcaaacccgccaaat 17696421  T
Q  649 gaataaacttgaagtagtggtccgaaatctagcctggaaagataaaaggaaagtcaagccagtgacaaactaaataccaaacacttccaaa 739  Q
    || ||||||  | ||| || |||  |||  ||||||||   | ||||| |||  |||||||||||| || ||||  |||||||||||||||    
T  17696422 gagtaaactgaatgtaatgatccttaatagagcctggaggaacaaaagaaaacccaagccagtgaccaagtaaaacccaaacacttccaaa 17696512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 564 - 621
Target Start/End: Original strand, 26397594 - 26397651
Alignment:
Q  564 tttctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaat 621  Q
    ||||||||||||||||||||||| | |||||||||||||||||| ||||||| |||||    
T  26397594 tttctctccttccatattgcccatacacaggcaagccaaataaccttaagataaaaat 26397651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 298 - 395
Target Start/End: Original strand, 40632648 - 40632744
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgttataaaaac 395  Q
    |||||||||||||  ||||| ||||| ||| | |||| ||||||||||||||||||||||||||||  | |||||||| ||||||||| || ||||||    
T  40632648 aacaaatcaaaatgaaatatattgctcaaaagaagagtgattcaccccgcataaggtgtgctaaaa-cgatgaatcactcaaagtctgatacaaaaac 40632744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 487 - 606
Target Start/End: Complemental strand, 16119859 - 16119740
Alignment:
Q  487 gccataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattaccacagttttgaagacgcggctgtttctctccttccatattgccca 586  Q
    ||||||||||  |||||||||||||||||||||||||| |  |||| || |  |||||| ||||||| ||   | | |||||||||||||| ||||||||    
T  16119859 gccataaaaaagaattcaacttcactttttcaacaatactgagaggatccacaaccacatttttgaaaacatagttatttctctccttccaaattgccca 16119760  T
Q  587 aagacaggcaagccaaataa 606  Q
    || ||| || ||||||||||    
T  16119759 aacacaagccagccaaataa 16119740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 477 - 612
Target Start/End: Complemental strand, 33651140 - 33651005
Alignment:
Q  477 ttcgaagattgccataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattaccacagttttgaagacgcggctgtttctctccttcc 576  Q
    ||||||||  |||||||||| ||||||| ||||||| ||||||||||| |   ||| ||||| ||| || |||| || | || | |||||||||||||||    
T  33651140 ttcgaagaaagccataaaaaaaaattcagcttcactctttcaacaatactgaaaggatcaataaccgcattttttaaaatgcagttgtttctctccttcc 33651041  T
Q  577 atattgcccaaagacaggcaagccaaataactttaa 612  Q
    | |||||||||| ||| ||||| || ||||| ||||    
T  33651040 aaattgcccaaatacaagcaagtcagataaccttaa 33651005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 7123969 - 7124015
Alignment:
Q  336 gattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagt 382  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||    
T  7123969 gattcaacccgcataaggtgtgctaaaagtgatgaatcacccaaagt 7124015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 487 - 621
Target Start/End: Original strand, 40632873 - 40633007
Alignment:
Q  487 gccataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattaccacagttttgaagacgcggctgtttctctccttccatattgccca 586  Q
    ||||||||||  |||||| |||||| ||||| |||||| | | ||| ||||||||   |  |||||| | || | | |||||||||||||||||||| ||    
T  40632873 gccataaaaaagaattcagcttcaccttttcgacaatattgtaaggatcaattactgtatctttgaataagcagttatttctctccttccatattgcaca 40632972  T
Q  587 aagacaggcaagccaaataactttaagatgaaaat 621  Q
     | |||||||||||||||||| ||||||| |||||    
T  40632973 tacacaggcaagccaaataaccttaagataaaaat 40633007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 562 - 622
Target Start/End: Original strand, 7125314 - 7125374
Alignment:
Q  562 tgtttctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaatg 622  Q
    |||||||||||||||| |||| ||||| ||| |||||||||||||| ||||||| ||||||    
T  7125314 tgtttctctccttccaaattgtccaaatacaagcaagccaaataaccttaagataaaaatg 7125374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 657
Target Start/End: Original strand, 17946164 - 17946272
Alignment:
Q  549 ttgaagacgcggctgtttctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaatggggagatctctgcaaacctgccaaat 648  Q
    ||||| || |||||||||| |||||||||||||||||||| ||| ||||||||| |||| |||| |   | ||| | ||||||  ||||||| |||||||    
T  17946164 ttgaaaacacggctgtttcgctccttccatattgcccaaacacaagcaagccaagtaaccttaaaaaacacatgagtagatctaggcaaacccgccaaat 17946263  T
Q  649 gaataaact 657  Q
    || ||||||    
T  17946264 gagtaaact 17946272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 487 - 615
Target Start/End: Complemental strand, 37268170 - 37268042
Alignment:
Q  487 gccataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattaccacagttttgaagacgcggctgtttctctccttccatattgccca 586  Q
    ||||||||||  | ||||||||||| |||||||||||| | |  || ||||| |||||| |||| ||||  |   | |||||||| ||||||||||||||    
T  37268170 gccataaaaaagagttcaacttcaccttttcaacaatattgtacggatcaataaccacattttttaagatacaattatttctctctttccatattgccca 37268071  T
Q  587 aagacaggcaagccaaataactttaagat 615  Q
     | ||| |||||||||||||| |||||||    
T  37268070 tacacaagcaagccaaataaccttaagat 37268042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 549 - 612
Target Start/End: Complemental strand, 15504684 - 15504621
Alignment:
Q  549 ttgaagacgcggctgtttctctccttccatattgcccaaagacaggcaagccaaataactttaa 612  Q
    ||||| || ||| |||||| |||||||||||||||||||| ||| |||||||||||||| ||||    
T  15504684 ttgaaaacacggttgtttcgctccttccatattgcccaaacacaagcaagccaaataaccttaa 15504621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 298 - 379
Target Start/End: Original strand, 9194543 - 9194624
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaa 379  Q
    |||||||||||||  ||||| |||||| || |||||| |||||| |||||| |||| ||||||| || | ||||||||||||    
T  9194543 aacaaatcaaaatgaaatatattgctttaaaggagagtgattcatcccgcacaaggcgtgctaagagcgatgaatcacccaa 9194624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 298 - 379
Target Start/End: Complemental strand, 23257242 - 23257161
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaa 379  Q
    ||||||||||||| |||||| ||| | ||| | | || ||||||||||||| ||||||||||||||  | ||||||||||||    
T  23257242 aacaaatcaaaatggaatatattgttcaaacgaaaagtgattcaccccgcacaaggtgtgctaaaaccgatgaatcacccaa 23257161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 1585547 - 1585483
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaa 362  Q
    ||||||||||||| |||||| ||||| ||| | |||| ||||||||||| | |||||||||||||    
T  1585547 aacaaatcaaaattgaatatattgctcaaaagcagagtgattcaccccgtacaaggtgtgctaaa 1585483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 336 - 388
Target Start/End: Complemental strand, 24251340 - 24251288
Alignment:
Q  336 gattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgtta 388  Q
    ||||||||||||| |||||||| |||||||| |||||||||||| || |||||    
T  24251340 gattcaccccgcacaaggtgtgttaaaagtgatgaatcacccaatgtatgtta 24251288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 372
Target Start/End: Original strand, 21269918 - 21269953
Alignment:
Q  337 attcaccccgcataaggtgtgctaaaagtggtgaat 372  Q
    |||||||||||| |||||||||||||||||||||||    
T  21269918 attcaccccgcacaaggtgtgctaaaagtggtgaat 21269953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 372
Target Start/End: Original strand, 21271932 - 21271967
Alignment:
Q  337 attcaccccgcataaggtgtgctaaaagtggtgaat 372  Q
    |||||||||||| |||||||||||||||||||||||    
T  21271932 attcaccccgcacaaggtgtgctaaaagtggtgaat 21271967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 570 - 612
Target Start/End: Complemental strand, 1585238 - 1585196
Alignment:
Q  570 tccttccatattgcccaaagacaggcaagccaaataactttaa 612  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||    
T  1585238 tccttccatattgcccaaacacaagcaagccaaataaccttaa 1585196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 570 - 612
Target Start/End: Original strand, 21270190 - 21270232
Alignment:
Q  570 tccttccatattgcccaaagacaggcaagccaaataactttaa 612  Q
    ||||||||||||||||||  ||| |||||||||||||||||||    
T  21270190 tccttccatattgcccaagtacaagcaagccaaataactttaa 21270232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 570 - 612
Target Start/End: Original strand, 21272204 - 21272246
Alignment:
Q  570 tccttccatattgcccaaagacaggcaagccaaataactttaa 612  Q
    ||||||||||||||||||  ||| |||||||||||||||||||    
T  21272204 tccttccatattgcccaagtacaagcaagccaaataactttaa 21272246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 363
Target Start/End: Complemental strand, 15504973 - 15504908
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaa 363  Q
    ||||||||||||| |||||| || ||||||   |||| ||||||||||||| |||||||| |||||    
T  15504973 aacaaatcaaaatggaatatattacttaaaaatagagtgattcaccccgcacaaggtgtgttaaaa 15504908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 363
Target Start/End: Original strand, 17696034 - 17696099
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaa 363  Q
    |||||||||||||||||||| || || |||   |||| |||||| |||||| ||||||||||||||    
T  17696034 aacaaatcaaaatagaatatattactcaaaaacagagtgattcatcccgcacaaggtgtgctaaaa 17696099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 363
Target Start/End: Original strand, 17945875 - 17945940
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaa 363  Q
    ||||||||||||| |||||| || || |||   |||| ||||||||||||| ||||||||||||||    
T  17945875 aacaaatcaaaatggaatatattactcaaaaacagagtgattcaccccgcacaaggtgtgctaaaa 17945940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 21825284 - 21825219
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagg-gattcaccccgcataaggtgtgctaaa 362  Q
    ||||||||||||| |||||| ||||| ||| | | ||| ||||||||||||| |||||||||||||    
T  21825284 aacaaatcaaaatggaatatattgctcaaaagaaaaggtgattcaccccgcacaaggtgtgctaaa 21825219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 444 - 612
Target Start/End: Original strand, 36224 - 36392
Alignment:
Q  444 caatcatgaaaaccaaacgcaattggcactctcttcgaagattgccataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattacca 543  Q
    ||||||||||||||||| ||||||||  |    |||||||||  |||||||| | ||||| ||||||||||||||| |||| | ||||| || ||||||     
T  36224 caatcatgaaaaccaaaagcaattggagcgtgattcgaagataaccataaaatggaattctacttcactttttcaagaatactatgaggatcgattaccg 36323  T
Q  544 cagttttgaagacgcggctgtttctctccttccatattgcccaaagacaggcaagccaaataactttaa 612  Q
     | |||| ||||| ||| ||||||| ||||||||||||||||||  | | | |||||||||||| ||||    
T  36324 tattttttaagacacggttgtttctttccttccatattgcccaaccagaagaaagccaaataaccttaa 36392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 444 - 621
Target Start/End: Original strand, 45468333 - 45468510
Alignment:
Q  444 caatcatgaaaaccaaacgcaattggcactctcttcgaagattgccataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattacca 543  Q
    |||||||||||||||||||| ||||| ||    || || ||  ||||||||||  |||||| |||||| ||||| |||||| | | ||| |||||||||     
T  45468333 caatcatgaaaaccaaacgccattggtacaaaatttgacgaaagccataaaaaagaattcagcttcaccttttcgacaatattgtaaggatcaattaccg 45468432  T
Q  544 cagttttgaagacgcggctgtttctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaat 621  Q
    || |||| ||||  |   | ||||||||||||||||||||||| | ||| |||||||||||||| ||||||| |||||    
T  45468433 cattttttaagatacaattatttctctccttccatattgcccatacacaagcaagccaaataaccttaagataaaaat 45468510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 298 - 388
Target Start/End: Complemental strand, 3376211 - 3376122
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgtta 388  Q
    |||||||||||||||||||| || || ||| | |||| ||||||||||||| ||||||||||||||  | |||||||| ||||||||||||    
T  3376211 aacaaatcaaaatagaatatattactcaaaagaagagtgattcaccccgcacaaggtgtgctaaaa-cgatgaatcactcaaagtctgtta 3376122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 298 - 388
Target Start/End: Original strand, 45701188 - 45701278
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgtta 388  Q
    ||||||||||||| |||||| ||||||||| | | || ||||||||| ||| ||||||||||||||| | |||||||| ||| ||||||||    
T  45701188 aacaaatcaaaatggaatatattgcttaaaagaaaagtgattcacccagcacaaggtgtgctaaaagcgatgaatcactcaatgtctgtta 45701278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 506 - 610
Target Start/End: Complemental strand, 12915598 - 12915494
Alignment:
Q  506 cttcactttttcaacaataatttgagggtcaattaccacagttttgaagacgcggctgtttctctccttccatattgcccaaagacaggcaagccaaata 605  Q
    |||||| ||||||| |||| | ||||  ||||||||| || |||||||||| ||| ||||||| || |||||||||||||||| |||  |||| ||||||    
T  12915598 cttcaccttttcaagaatattgtgagaatcaattaccgcatttttgaagacacggttgtttctatcattccatattgcccaaacacaaacaagtcaaata 12915499  T
Q  606 acttt 610  Q
    |||||    
T  12915498 acttt 12915494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 298 - 385
Target Start/End: Complemental strand, 1206513 - 1206426
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctg 385  Q
    |||||||||||||  ||||| ||||| |||||||    ||||||||||||| |||| ||||||||||||||||||||| |||| ||||    
T  1206513 aacaaatcaaaatgaaatatattgctcaaatggaagatgattcaccccgcacaaggcgtgctaaaagtggtgaatcactcaaaatctg 1206426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 564 - 615
Target Start/End: Complemental strand, 3375908 - 3375857
Alignment:
Q  564 tttctctccttccatattgcccaaagacaggcaagccaaataactttaagat 615  Q
    ||||||||||||||||||||||| | ||||||||| |||||||| |||||||    
T  3375908 tttctctccttccatattgcccatacacaggcaagtcaaataaccttaagat 3375857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 298 - 396
Target Start/End: Complemental strand, 28543851 - 28543753
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgttataaaaaca 396  Q
    ||||||| ||||| |||||| ||||| |||  || || ||||||| ||  | |||| ||||||||||||||||||||| |||| ||||||| |||||||    
T  28543851 aacaaattaaaatggaatatattgctcaaaccgaaagtgattcactccatacaaggcgtgctaaaagtggtgaatcactcaaaatctgttacaaaaaca 28543753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 657
Target Start/End: Complemental strand, 15140460 - 15140371
Alignment:
Q  568 tctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaatggggagatctctgcaaacctgccaaatgaataaact 657  Q
    ||||||| || |||||||||| ||| |||||||||||||| ||||||| |||||| | || |  | | | ||||||||||||||||||||    
T  15140460 tctcctttcaaattgcccaaatacaagcaagccaaataaccttaagataaaaatgagaagtttgcgggagacctgccaaatgaataaact 15140371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 388
Target Start/End: Complemental strand, 11123705 - 11123655
Alignment:
Q  337 attcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgtta 388  Q
    |||||||||||| |||||||||||||| || |||||||||||| ||||||||    
T  11123705 attcaccccgcacaaggtgtgctaaaa-tgatgaatcacccaacgtctgtta 11123655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 336 - 379
Target Start/End: Original strand, 30515819 - 30515862
Alignment:
Q  336 gattcaccccgcataaggtgtgctaaaagtggtgaatcacccaa 379  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||||    
T  30515819 gattcaccccgcacaaggtgtactaaaagtgatgaatcacccaa 30515862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 336 - 374
Target Start/End: Complemental strand, 42184132 - 42184094
Alignment:
Q  336 gattcaccccgcataaggtgtgctaaaagtggtgaatca 374  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  42184132 gattcaccccgcacaagatgtgctaaaagtggtgaatca 42184094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 562 - 657
Target Start/End: Original strand, 16423497 - 16423592
Alignment:
Q  562 tgtttctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaatggggagatctctgcaaacctgccaaatgaataaact 657  Q
    |||||| | |||||||||||||||||| ||| |||||||||||||| |||||||  || || | |||||   ||||||| ||||||||||||||||    
T  16423497 tgtttcgcaccttccatattgcccaaacacaagcaagccaaataaccttaagatacaagtgagtagatcgtggcaaacccgccaaatgaataaact 16423592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 298 - 408
Target Start/End: Complemental strand, 10349614 - 10349504
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgttataaaaacaa 397  Q
    ||||||||||||| |||||| ||||| |||  || || ||||||||| ||| ||||||||||||||||| ||||||||  ||  ||||||| ||| ||||    
T  10349614 aacaaatcaaaatggaatatattgctcaaactgaaagtgattcaccctgcacaaggtgtgctaaaagtgatgaatcacaaaatatctgttacaaatacaa 10349515  T
Q  398 gacacctaaca 408  Q
      |||||||||    
T  10349514 agcacctaaca 10349504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 298 - 395
Target Start/End: Original strand, 24509317 - 24509413
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgttataaaaac 395  Q
    ||||||||||||| |||||| ||||| ||| | |||| ||||||||| ||| ||||||||||||||  | |||||||| ||||||||| || ||||||    
T  24509317 aacaaatcaaaatggaatatattgctcaaaagaagagtgattcaccc-gcacaaggtgtgctaaaaacgatgaatcactcaaagtctgatacaaaaac 24509413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 564 - 621
Target Start/End: Original strand, 24509619 - 24509676
Alignment:
Q  564 tttctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaat 621  Q
    ||||||||||||||||||| ||| | |||||||||||||||||| ||||||| |||||    
T  24509619 tttctctccttccatattgtccatacacaggcaagccaaataaccttaagataaaaat 24509676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 337 - 405
Target Start/End: Original strand, 24308316 - 24308383
Alignment:
Q  337 attcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgttataaaaacaagacaccta 405  Q
    |||||||||||| ||||||| |||||| |||||||||||||||| ||||||| ||| || |||||||||    
T  24308316 attcaccccgcacaaggtgtactaaaa-tggtgaatcacccaaaatctgttacaaagaccagacaccta 24308383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 298 - 385
Target Start/End: Original strand, 20819603 - 20819690
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctg 385  Q
    ||||||||||||| |||||| ||||| ||| | | || ||||||||| ||| ||||||||||||||  | |||||||| |||||||||    
T  20819603 aacaaatcaaaatggaatatattgctcaaaagaaaagtgattcacccagcacaaggtgtgctaaaaacgatgaatcactcaaagtctg 20819690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 477 - 587
Target Start/End: Original strand, 33567364 - 33567474
Alignment:
Q  477 ttcgaagattgccataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattaccacagttttgaagacgcggctgtttctctccttcc 576  Q
    |||||||||  || ||||||  |||||| |||||| ||||||| |||| | ||||| || |||||| || |||| ||| | ||| ||||||| |||||||    
T  33567364 ttcgaagataaccttaaaaaagaattcatcttcaccttttcaagaatattgtgaggatcgattaccgcattttttaaggcacggttgtttctatccttcc 33567463  T
Q  577 atattgcccaa 587  Q
    |||||||||||    
T  33567464 atattgcccaa 33567474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 337 - 405
Target Start/End: Complemental strand, 34505272 - 34505205
Alignment:
Q  337 attcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgttataaaaacaagacaccta 405  Q
    ||||||||||||||||||||||||||| |||||||||||| ||  ||| ||| |||||  |||||||||    
T  34505272 attcaccccgcataaggtgtgctaaaa-tggtgaatcacctaatatctattacaaaaatcagacaccta 34505205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 298 - 385
Target Start/End: Original strand, 33855469 - 33855556
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctg 385  Q
    |||||||||||||  ||||| ||||| ||| |||||  | |||||| |||| | ||||||||||||| | |||| |||||||||||||    
T  33855469 aacaaatcaaaatgaaatatattgctcaaaaggagaaagcttcacctcgcaaagggtgtgctaaaagcgatgaaacacccaaagtctg 33855556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 298 - 385
Target Start/End: Complemental strand, 33925453 - 33925366
Alignment:
Q  298 aacaaatcaaaatagaatatgttgcttaaatggagagggattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctg 385  Q
    |||||||||||||  ||||| ||||| ||| |||||  | |||||| |||| | ||||||||||||| | |||| |||||||||||||    
T  33925453 aacaaatcaaaatgaaatatattgctcaaaaggagaaagcttcacctcgcaaagggtgtgctaaaagcgatgaaacacccaaagtctg 33925366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 488 - 606
Target Start/End: Complemental strand, 16632525 - 16632407
Alignment:
Q  488 ccataaaaagaaattcaacttcactttttcaacaataatttgagggtcaattaccacagttttgaagacgcggctgtttctctccttccatattgcccaa 587  Q
    |||||||||| || ||  |||||| || |||| |||| | ||||| || ||||| | | |||||||||| | | ||||||  |||||||| |||||||||    
T  16632525 ccataaaaaggaagtccgcttcaccttgtcaaaaatactatgaggatcgattacaatatttttgaagacacagttgtttcaatccttccagattgcccaa 16632426  T
Q  588 agacaggcaagccaaataa 606  Q
    ||| | |||||||||||||    
T  16632425 agagaagcaagccaaataa 16632407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 513 - 621
Target Start/End: Original strand, 1319 - 1427
Alignment:
Q  513 ttttcaacaataatttgagggtcaattaccacagttttgaagacgcggctgtttctctccttccatattgcccaaagacaggcaagccaaataactttaa 612  Q
    ||||| |||||| | | ||| |||||||| ||| ||||||| |  | ||| ||||||||||||||||||||||| | | |||||||||||||||| |||     
T  1319 ttttcgacaatattgtaaggatcaattactacatttttgaataaacagctatttctctccttccatattgcccatacaaaggcaagccaaataaccttat 1418  T
Q  613 gatgaaaat 621  Q
    ||| |||||    
T  1419 gataaaaat 1427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 336 - 388
Target Start/End: Complemental strand, 2247 - 2195
Alignment:
Q  336 gattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgtta 388  Q
    |||||| |||||| |||||||||||||| || ||| |||||||||||||||||    
T  2247 gattcatcccgcacaaggtgtgctaaaattgatgattcacccaaagtctgtta 2195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 336 - 388
Target Start/End: Complemental strand, 9183 - 9131
Alignment:
Q  336 gattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgtta 388  Q
    |||||| |||||| |||||||||||||| || ||| |||||||||||||||||    
T  9183 gattcatcccgcacaaggtgtgctaaaattgatgattcacccaaagtctgtta 9131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 336 - 388
Target Start/End: Original strand, 40337 - 40389
Alignment:
Q  336 gattcaccccgcataaggtgtgctaaaagtggtgaatcacccaaagtctgtta 388  Q
    |||||| |||||| |||||||||||||| || ||| |||||||||||||||||    
T  40337 gattcatcccgcacaaggtgtgctaaaattgatgattcacccaaagtctgtta 40389  T

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Target: scaffold0116 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 562 - 657
Target Start/End: Original strand, 42493 - 42588
Alignment:
Q  562 tgtttctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaatggggagatctctgcaaacctgccaaatgaataaact 657  Q
    |||||| ||||||||||||| |||||| ||| |||||||||||||| |||| |   | ||| | ||||||  ||||||| ||||||||| ||||||    
T  42493 tgtttcgctccttccatattacccaaacacaagcaagccaaataaccttaaaaaacacatgagtagatctaggcaaacccgccaaatgagtaaact 42588  T

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Target: scaffold0116; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 562 - 657
Target Start/End: Original strand, 46413 - 46508
Alignment:
Q  562 tgtttctctccttccatattgcccaaagacaggcaagccaaataactttaagatgaaaatggggagatctctgcaaacctgccaaatgaataaact 657  Q
    |||||| ||||||||||||| |||||| ||| |||||||||||||| |||| |   | ||| | ||||||  ||||||| ||||||||| ||||||    
T  46413 tgtttcgctccttccatattacccaaacacaagcaagccaaataaccttaaaaaacacatgagtagatctaggcaaacccgccaaatgagtaaact 46508  T

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