View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1616_low_3 (Length: 478)
Name: NF1616_low_3
Description: NF1616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1616_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 5 - 461
Target Start/End: Original strand, 9952057 - 9952519
Alignment:
| Q |
5 |
cacaggggtccctccgtgtgtcctcgaccaaaggtaagtttgattagtgggtcattggttattgggttgagggccgatccggtagagttatatctaaaaa |
104 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
9952057 |
cacaggggaccctccgtgtgtcctcgaccaaaggtaagttggattagtgggtcgttggttattgggccgagggtcggtccggtagagttatatctaaaaa |
9952156 |
T |
|
| Q |
105 |
gtgtatgtaatataatgccat-gttttaggtgcaatgttcacttgctcataagtttttctcaagaaaaatgttggatgatgcaaaagaaaccttcatgaa |
203 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9952157 |
gtgtatgtaatataatgccattgttttaggtgcaatgttcacttgctcataggtttttctcaagaaaaatgttggatgctgcaaaagaaaccttcatgaa |
9952256 |
T |
|
| Q |
204 |
taaatgttttagctacccatgtatggttacaaagcatttttaatttttaactacttatgtatatggtaacaaataaatgttgattgttacgaaaaatgga |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9952257 |
taaatgttttagctacccatgtatggttacaaagcatttttaatttttaactacttatgtatatggtaacaaataaatgttgattgttacgaaaaatgga |
9952356 |
T |
|
| Q |
304 |
agaacaa-----gacgaaataatttgattttgatttatcaattgcaacatatacacaccatgatttcaatcaaatccctagagtaagagtacattattcc |
398 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9952357 |
agaacaaaatgtgacgaaataatttgattttgatttatcaattgcaacatgtacacaccatgatttcaatcaaatccctagagtaagagtacattattcc |
9952456 |
T |
|
| Q |
399 |
acatgtnnnnnnnnnnnnnnnnnngtacattattccatatcacatcgtacttatagttggaca |
461 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9952457 |
acatgtaaaaaaataaaaataaaagtacattattccatatcacatcgtacttatagttggaca |
9952519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University