View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1616_low_5 (Length: 262)
Name: NF1616_low_5
Description: NF1616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1616_low_5 |
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| [»] scaffold1030 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 14278566 - 14278321
Alignment:
| Q |
16 |
atggagcaggttggtaggtgatgatgcttaccatgaatgggagtatcatacaacaaaatataagcaactattagtggatcaaaatctgagtgaaccattt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
14278566 |
atggagcaggttggtaggtgatgatgcttaccatgaatgggagtatcatacaacaaaatataaggaactattagtggatcaaaatctgagtgaaccattt |
14278467 |
T |
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| Q |
116 |
ggaactattagtggtgattctccatctcaacgccttcattcttatttgaaaatcaatagaaccttgattggtttgattaaaaatcactcaaaaatggctt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14278466 |
ggaactattagtggtgattctccatctcaacgccttcattcttatttgaaaatcaatagaaccttgattggtttgattaaaaatcactcaaaaatggctt |
14278367 |
T |
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| Q |
216 |
tgtatatcttccttgagactggtcgcttctggtttcctgctcaagt |
261 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14278366 |
tgtatatcctccttgagactggtcgcttctggtttcctgctcaagt |
14278321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 14258726 - 14258481
Alignment:
| Q |
16 |
atggagcaggttggtaggtgatgatgcttaccatgaatgggagtatcatacaacaaaatataagcaactattagtggatcaaaatctgagtgaaccattt |
115 |
Q |
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||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||| |||||||||||| || ||| ||||| | ||| | |
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| T |
14258726 |
atggagcaggttggtaggtaataatgcttaccatgaatgggagtagcatacaacaaaatataaaggactattagtggagcataatttgagtagatcatgt |
14258627 |
T |
|
| Q |
116 |
ggaactattagtggtgattctccatctcaacgccttcattcttatttgaaaatcaatagaaccttgattggtttgattaaaaatcactcaaaaatggctt |
215 |
Q |
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||||||||||||| |||||| | || ||||| ||||||||||||||||| ||||||| |||||||| ||||||||||||||| ||||||||| ||| |
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| T |
14258626 |
ggaactattagtgacgattctttctttcgacgccatcattcttatttgaaaagcaatagatccttgatttctttgattaaaaatcattcaaaaatgcctt |
14258527 |
T |
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| Q |
216 |
tgtatatcttccttgagactggtcgcttctggtttcctgctcaagt |
261 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14258526 |
tgtatattttccttgagactggtcgcttctggtttcctgctcaagt |
14258481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 14284043 - 14283800
Alignment:
| Q |
17 |
tggagcaggttggtaggtgatgatgcttaccatgaatgggagtatcatacaacaaaatataagcaactattagtggatcaaaatctgagtgaaccatttg |
116 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| | | | || |
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| T |
14284043 |
tggagcatgttggtaggtaatgatgcttaccatgaatgggagtatcatacaacaaaatataaaggactattagtggatcagaatttgaggagatcttctg |
14283944 |
T |
|
| Q |
117 |
gaactattagtggtgattctccatctcaacgccttcattcttatttgaaaatcaatagaaccttgattggtttgattaaaaatcactcaaaaatggcttt |
216 |
Q |
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||||||||||||||||||| | || ||||| |||||||||||| |||| ||||||| ||||||||| ||| ||||||||||| || ||||||||||| |
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| T |
14283943 |
gaactattagtggtgattccttttttcgacgccatcattcttatttaaaaagcaatagatccttgattgcttttattaaaaatcattc-aaaatggcttt |
14283845 |
T |
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| Q |
217 |
gtatatcttccttgagactggtcgcttctggtttcctgctcaagt |
261 |
Q |
| |
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|||||| |||||||||||| || ||||||| |||||||||||||| |
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| T |
14283844 |
gtatattttccttgagactagttgcttctgctttcctgctcaagt |
14283800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1030 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold1030
Description:
Target: scaffold1030; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 2924 - 3169
Alignment:
| Q |
16 |
atggagcaggttggtaggtgatgatgcttaccatgaatgggagtatcatacaacaaaatataagcaactattagtggatcaaaatctgagtgaaccattt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
2924 |
atggagcaggttggtaggtgatgatgcttaccatgaatggaagtatcatacaacaaaatgtaaggaactattagtggatcaaaatctgagtgaaccattt |
3023 |
T |
|
| Q |
116 |
ggaactattagtggtgattctccatctcaacgccttcattcttatttgaaaatcaatagaaccttgattggtttgattaaaaatcactcaaaaatggctt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3024 |
ggaactattagtggtgattctccatctcaacgccttcattcttatttgaaaatcaatagaaccttgattggtttgattaaaaatcactcaaaaatggctt |
3123 |
T |
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| Q |
216 |
tgtatatcttccttgagactggtcgcttctggtttcctgctcaagt |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3124 |
tgtatatcttccttgagactggtcgcttctggtttcctgctcaagt |
3169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 35138825 - 35138580
Alignment:
| Q |
16 |
atggagcaggttggtaggtgatgatgcttaccatgaatgggagtatcatacaacaaaatataagcaactattagtggatcaaaatctgagtgaaccattt |
115 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| |
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| T |
35138825 |
atggagcaggttgctaggtaatgatgcttaccatgaatgggagtatcatacaacaaaatataaggaactattagtggatcagaatctgagtgactcatta |
35138726 |
T |
|
| Q |
116 |
ggaactattagtggtgattctccatctcaacgccttcattcttatttgaaaatcaatagaaccttgattggtttgattaaaaatcactcaaaaatggctt |
215 |
Q |
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||||||| ||||||| ||||| ||| |||||| ||||||||||||||| |||||||||| || ||| || ||||||||||||||| |||||||||||| |
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| T |
35138725 |
ggaactactagtggtaattcttcatttcaacgaattcattcttatttgagaatcaatagatccatgactgatttgattaaaaatcattcaaaaatggctc |
35138626 |
T |
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| Q |
216 |
tgtatatcttccttgagactggtcgcttctggtttcctgctcaagt |
261 |
Q |
| |
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| ||||| || ||||||||||| || |||||||||||||||||||| |
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| T |
35138625 |
tatatatttttcttgagactggccgtttctggtttcctgctcaagt |
35138580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 35131517 - 35131272
Alignment:
| Q |
16 |
atggagcaggttggtaggtgatgatgcttaccatgaatgggagtatcatacaacaaaatataagcaactattagtggatcaaaatctgagtgaaccattt |
115 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| || |||| |
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| T |
35131517 |
atggagcaggttgctaggtaatgatgcttaccatgaatgggagtatcatacaacaaaatataaggaactattagtggatcggaatctgagcgactcatta |
35131418 |
T |
|
| Q |
116 |
ggaactattagtggtgattctccatctcaacgccttcattcttatttgaaaatcaatagaaccttgattggtttgattaaaaatcactcaaaaatggctt |
215 |
Q |
| |
|
||||||| ||||||| ||||| ||| |||||| ||||||||||||||| |||||||||| || ||| || ||||||||||||||| |||||||||||| |
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| T |
35131417 |
ggaactactagtggtaattcttcatttcaacgaattcattcttatttgagaatcaatagatccatgactgatttgattaaaaatcattcaaaaatggctc |
35131318 |
T |
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| Q |
216 |
tgtatatcttccttgagactggtcgcttctggtttcctgctcaagt |
261 |
Q |
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| ||||| || ||||||||||| || |||||||||||||||||||| |
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| T |
35131317 |
tatatatttttcttgagactggccgtttctggtttcctgctcaagt |
35131272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 35123246 - 35123189
Alignment:
| Q |
204 |
caaaaatggctttgtatatcttccttgagactggtcgcttctggtttcctgctcaagt |
261 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||||| |||||||||||||||||||| |
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|
| T |
35123246 |
caaaaatgagtttgtttatcgcccttgagactggtcaattctggtttcctgctcaagt |
35123189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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