View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1616_low_6 (Length: 256)
Name: NF1616_low_6
Description: NF1616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1616_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 25046159 - 25045930
Alignment:
| Q |
12 |
agaagcaaaggtgaagaaacgaattgttatcacctcgaggaagaaaaaaccaagaaagagattaatttttaatgcgaaaaagggttcaaaatcaaagaaa |
111 |
Q |
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| T |
25046159 |
agaagaaaaggtgaagaaacgaattgttatcacctcgaggaagaaaaaaccaagaaacagattaatttttaatgcgaaaaagggttcaaaatcaaagaaa |
25046060 |
T |
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| Q |
112 |
gcatcaacatcaaagaacttatctatgtcaaagagggcctcaacactgccacccccgcgagtaattttggctttgccggcaaatcatagagcctaaaatt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25046059 |
gcatcaacatcaaagaacttatctatgtcaaagagggcatcaacactgccacccccgcgagtaattttggctttgccggcaaatcatagagcctaaaatt |
25045960 |
T |
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| Q |
212 |
tgttactgcgttttgtaggttgtagtaaag |
241 |
Q |
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|||||||| ||||||||||||||| ||||| |
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| T |
25045959 |
tgttactgtgttttgtaggttgtattaaag |
25045930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 25050548 - 25050325
Alignment:
| Q |
18 |
aaaggtgaagaaacgaattgttatcacctcgaggaagaaaaaaccaagaaagagattaatttttaatgcgaaaaagggttcaaaatcaaagaaagcatca |
117 |
Q |
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|||||||||||||| ||||||||||||| || |||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
25050548 |
aaaggtgaagaaacaaattgttatcaccctgaagaagaaaaaaccaagaaagagatttatttttaatacgaggaagggttcaaaatcaaagaaagcatca |
25050449 |
T |
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| Q |
118 |
acatcaaagaacttatctatgtcaaagagggcctcaacactgccacccccgcgagtaattttggctttgccggcaaatcatagagcctaaaatttgttac |
217 |
Q |
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|| ||||| ||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
25050448 |
acttcaaataacttatctgtgtcaaagagggcatcaacactgtcacccccgcgagtaattttggctttgccggcaaatcctagaacctaaaatttgttac |
25050349 |
T |
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| Q |
218 |
tgcgttttgtaggttgtagtaaag |
241 |
Q |
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| T |
25050348 |
tacgttttgtgggttgtattaaag |
25050325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 28682439 - 28682515
Alignment:
| Q |
138 |
gtcaaagagggcctcaacactgccacccccgcgagtaattttggctttgccggcaaatcatagagcctaaaatttgt |
214 |
Q |
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|||||||||||| ||||| ||||||| ||| |||||||||||||||||| || |||| |||||||| |||||| |
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| T |
28682439 |
gtcaaagagggcatcaactttgccacctccgatggtaattttggctttgccgaaaagtcatggagcctaagatttgt |
28682515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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