View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1617-INSERTION-1 (Length: 313)
Name: NF1617-INSERTION-1
Description: NF1617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1617-INSERTION-1 |
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| [»] scaffold0287 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: scaffold0287 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 313
Target Start/End: Original strand, 14634 - 14939
Alignment:
| Q |
8 |
acttcatgagacagaagctattttcctttccttctttgtttcagatcatattccttttatggggtggattgataaactcactggggcaaatgctcgtgtt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14634 |
acttcatgagacagaagctattttcctttccttctttgtttcagatcatattccttttatggggtggattgataaactcactggggcaaatgctcgtgtt |
14733 |
T |
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| Q |
108 |
gacaagactttcaaggctttggatgagtttcttgaacaagtccttcaagaacatctcaatcctaataatcggaagaaagatgaagaagagaaggatatag |
207 |
Q |
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| T |
14734 |
gacaagactttcaaggctttggatgagtttcttgaacaagtccttcaagaacatctcaatcctaataatcggaagaaagatgaagaagagaaggatatag |
14833 |
T |
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| Q |
208 |
ttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaatgatcacatcaaatccgtccttatggtatgttccaaacactattt |
307 |
Q |
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| T |
14834 |
ttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaatgatcacatcaaatccgtccttatggtatgttccaaacactattt |
14933 |
T |
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| Q |
308 |
ttatta |
313 |
Q |
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|||||| |
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| T |
14934 |
ttatta |
14939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 313
Target Start/End: Complemental strand, 3631451 - 3631146
Alignment:
| Q |
8 |
acttcatgagacagaagctattttcctttccttctttgtttcagatcatattccttttatggggtggattgataaactcactggggcaaatgctcgtgtt |
107 |
Q |
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| T |
3631451 |
acttcatgagacagaagctattttcctttccttctttgtttcagatcatattccttttatggggtggattgataaactcactggggcaaatgctcgtgtt |
3631352 |
T |
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| Q |
108 |
gacaagactttcaaggctttggatgagtttcttgaacaagtccttcaagaacatctcaatcctaataatcggaagaaagatgaagaagagaaggatatag |
207 |
Q |
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| T |
3631351 |
gacaagactttcaaggctttggatgagtttcttgaacaagtccttcaagaacatctcaatcctaataatcggaagaaagatgaagaagagaaggatatag |
3631252 |
T |
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| Q |
208 |
ttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaatgatcacatcaaatccgtccttatggtatgttccaaacactattt |
307 |
Q |
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| T |
3631251 |
ttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaatgatcacatcaaatccgtccttatggtatgttccaaacactattt |
3631152 |
T |
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| Q |
308 |
ttatta |
313 |
Q |
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|||||| |
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| T |
3631151 |
ttatta |
3631146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 295
Target Start/End: Complemental strand, 3621054 - 3620767
Alignment:
| Q |
8 |
acttcatgagacagaagctattttcctttccttctttgtttcagatcatattccttttatggggtggattgataaactcactggggcaaatgctcgtgtt |
107 |
Q |
| |
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|||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| |||||||||| |
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| T |
3621054 |
acttaatgagacacaagctattttcctttccttttttgtttcagattatattccttttatggggtgggttgataaactcacaggggcaattgctcgtgtt |
3620955 |
T |
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| Q |
108 |
gacaagactttcaaggctttggatgagtttcttgaacaagtccttcaagaacatctcaatcctaataatcggaagaaagatgaagaagagaaggatatag |
207 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| |||| |||||||| |||||||||||||||| |
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| T |
3620954 |
gacaacactttcaaggctttggatgagttctttgaacaagtcctcaaggaacatctcaatcctaataataggaaaaaagatgatgaagagaaggatatag |
3620855 |
T |
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| Q |
208 |
ttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaatgatcacatcaaatccgtccttatggtatgttc |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| |
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| T |
3620854 |
ttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaataatcacatcaaagccgtcgttatggtatgttc |
3620767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 9401208 - 9401162
Alignment:
| Q |
39 |
ttctttgtttcagatcatattccttttatggggtggattgataaact |
85 |
Q |
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||||||||||| ||| ||||||| |||||||| |||||||||||||| |
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| T |
9401208 |
ttctttgtttctgattatattccatttatgggttggattgataaact |
9401162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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