View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1617-INSERTION-2 (Length: 690)

Name: NF1617-INSERTION-2
Description: NF1617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1617-INSERTION-2
NF1617-INSERTION-2
[»] scaffold0023 (2 HSPs)
scaffold0023 (254-690)||(113849-114284)
scaffold0023 (7-188)||(114350-114531)
[»] chr8 (1 HSPs)
chr8 (256-334)||(21305875-21305953)
[»] chr5 (11 HSPs)
chr5 (256-339)||(33734307-33734390)
chr5 (254-331)||(33904397-33904474)
chr5 (256-339)||(33821637-33821720)
chr5 (256-330)||(33762769-33762843)
chr5 (256-333)||(33679819-33679896)
chr5 (257-333)||(33865891-33865967)
chr5 (256-333)||(33698536-33698613)
chr5 (255-339)||(33748778-33748862)
chr5 (255-339)||(33834898-33834982)
chr5 (105-187)||(33865739-33865821)
chr5 (73-186)||(33762589-33762702)
[»] scaffold0001 (1 HSPs)
scaffold0001 (260-331)||(148788-148859)
[»] scaffold0193 (1 HSPs)
scaffold0193 (254-360)||(25189-25295)
[»] scaffold0247 (1 HSPs)
scaffold0247 (257-330)||(22155-22228)
[»] chr7 (1 HSPs)
chr7 (260-331)||(5471194-5471265)


Alignment Details
Target: scaffold0023 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 254 - 690
Target Start/End: Complemental strand, 114284 - 113849
Alignment:
Q  254 ctcaaatgtgtgtgccaatagtttttgacatcattagctgttctacccggaagccttcccgcaatcaatgaccatctatattatatttatccaatatatg 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  114284 ctcaaatgtgtgtgccaatagtttttgacatcattagctgttctagccggaagccttcccgcaatcaatgaccatctatattatatttatccaatatatg 114185  T
Q  354 agtaagtaaattaattgaaatattatctaaataggaagaatttaaaagtactctctcccaatctcccaaagtgaaaaactcgcttgaaaagaaaaaactg 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  114184 agtaagtaaattaattgaaatattatctaaataggaagaatttaaaagtactctctcccaatctcccaaagtgaaaaactcgcttgaaaagaaaaaactg 114085  T
Q  454 ttacaaaattaataacaaattctactttccttataaaaagcaatccaattaaatcctctaattattccaacttgcatcactctcaagtcattatcgctca 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  114084 ttacaaaattaataacaaattctactttccttataaaaagcaatccaattaaatcctctaattattccaacttgcatcactctcaagtcattatcgctca 113985  T
Q  554 ctctatatttatgatatagtgaatatagggagaggattgtctcaagtgacattagagacatgtttatttatagccttttatttggcatgagagagaaaag 653  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  113984 ctctatatttatgatatagtgaatatagggagaggattgtctcaagtgacattagagacatgtttatttatagccttttatttggcatgagagag-aaag 113886  T
Q  654 agaaaaagggaaaaggggaatttaagggtgagggttt 690  Q
    |||||||||||||||| ||||||||||||||||||||    
T  113885 agaaaaagggaaaaggagaatttaagggtgagggttt 113849  T

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Target: scaffold0023; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 114531 - 114350
Alignment:
Q  7 agaagcacaatctctaccacttttatttggatggataggctctgagtcgtgaacatctttggtaatattaccatctttatttgaatccattacagactgt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  114531 agaagcacaatctctaccacttttatttggatggataggctctgagtcgtgaacatctttggtaatattaccatctttatttgaatccattacagactgt 114432  T
Q  107 gtcacaaaactacaatgtttcctattaaaccaaggagaatcaggtgaaaaagtttgaggttgaggtttaataacatcatgac 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  114431 gtcacaaaactacaatgtttcctattaaaccaaggagaatcaggtgaaaaagtttgaggttgaggtttaataacatcatgac 114350  T

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Target: chr8 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 256 - 334
Target Start/End: Original strand, 21305875 - 21305953
Alignment:
Q  256 caaatgtgtgtgccaatagtttttgacatcattagctgttctacccggaagccttcccgcaatcaatgaccatctatat 334  Q
    ||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21305875 caaatttgtgtgccaatagttcttcacatcattagctgttctacccggaagccttccagcaatcaatgaccatctatat 21305953  T

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Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 33734307 - 33734390
Alignment:
Q  256 caaatgtgtgtgccaatagtttttgacatcattagctgttctacccggaagccttcccgcaatcaatgaccatctatattatat 339  Q
    |||||||||||||||| ||||||| ||||||||||| |||||||| ||||||||| | ||||||||||||||||||||||||||    
T  33734307 caaatgtgtgtgccaaaagtttttcacatcattagcagttctaccaggaagccttgcagcaatcaatgaccatctatattatat 33734390  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 254 - 331
Target Start/End: Original strand, 33904397 - 33904474
Alignment:
Q  254 ctcaaatgtgtgtgccaatagtttttgacatcattagctgttctacccggaagccttcccgcaatcaatgaccatcta 331  Q
    |||||||||||||||||||| || || |||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  33904397 ctcaaatgtgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 33904474  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 33821637 - 33821720
Alignment:
Q  256 caaatgtgtgtgccaatagtttttgacatcattagctgttctacccggaagccttcccgcaatcaatgaccatctatattatat 339  Q
    ||||||||||| |||||||||||| ||||||||||| |||||||  ||||||||| | ||||||||||||||||||||||||||    
T  33821637 caaatgtgtgttccaatagtttttcacatcattagccgttctactaggaagccttgcagcaatcaatgaccatctatattatat 33821720  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 256 - 330
Target Start/End: Original strand, 33762769 - 33762843
Alignment:
Q  256 caaatgtgtgtgccaatagtttttgacatcattagctgttctacccggaagccttcccgcaatcaatgaccatct 330  Q
    ||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||| | |||||||||||||||||    
T  33762769 caaatttgtgtgccaatagtttttcacatcattcgctgttctaccgggaagccttgcagcaatcaatgaccatct 33762843  T

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Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 256 - 333
Target Start/End: Original strand, 33679819 - 33679896
Alignment:
Q  256 caaatgtgtgtgccaatagtttttgacatcattagctgttctacccggaagccttcccgcaatcaatgaccatctata 333  Q
    ||||| |||||||||||| || || |||||||||||||||||||||||||||||  | ||||||||||||||||||||    
T  33679819 caaatttgtgtgccaataattcttcacatcattagctgttctacccggaagcctcgcagcaatcaatgaccatctata 33679896  T

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Target: chr5; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 257 - 333
Target Start/End: Original strand, 33865891 - 33865967
Alignment:
Q  257 aaatgtgtgtgccaatagtttttgacatcattagctgttctacccggaagccttcccgcaatcaatgaccatctata 333  Q
    ||||||||||||||||| || || ||||||||||||||||||||||| || ||| | ||||||||||||||||||||    
T  33865891 aaatgtgtgtgccaataattcttcacatcattagctgttctacccgggagtcttgcagcaatcaatgaccatctata 33865967  T

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Target: chr5; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 256 - 333
Target Start/End: Original strand, 33698536 - 33698613
Alignment:
Q  256 caaatgtgtgtgccaatagtttttgacatcattagctgttctacccggaagccttcccgcaatcaatgaccatctata 333  Q
    ||||| |||||||||||| || || |||||||||||||| ||||||||||||||| | |||||||| |||||||||||    
T  33698536 caaatttgtgtgccaataattcttcacatcattagctgtcctacccggaagccttgcagcaatcaaagaccatctata 33698613  T

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Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 255 - 339
Target Start/End: Original strand, 33748778 - 33748862
Alignment:
Q  255 tcaaatgtgtgtgccaatagtttttgacatcattagctgttctacccggaagccttcccgcaatcaatgaccatctatattatat 339  Q
    ||||||| |||| |||||||||||| ||||||||||||||||||||  |||| ||| | |||||||| | |||||||||||||||    
T  33748778 tcaaatgagtgttccaatagtttttcacatcattagctgttctaccttgaagtcttgcagcaatcaacgtccatctatattatat 33748862  T

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Target: chr5; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 255 - 339
Target Start/End: Original strand, 33834898 - 33834982
Alignment:
Q  255 tcaaatgtgtgtgccaatagtttttgacatcattagctgttctacccggaagccttcccgcaatcaatgaccatctatattatat 339  Q
    ||||||| |||| |||||||||||| ||||||||||||||||||||  |||| ||| | |||||||| | |||||||||||||||    
T  33834898 tcaaatgagtgttccaatagtttttcacatcattagctgttctaccttgaagtcttgcagcaatcaacgtccatctatattatat 33834982  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 187
Target Start/End: Original strand, 33865739 - 33865821
Alignment:
Q  105 gtgtcacaaaactacaatgtttcctattaaaccaaggagaatcaggtgaaaaagtttgaggttgaggtttaataacatcatga 187  Q
    ||||||||||| ||  || ||||| ||| ||||| || |||| || |||||||||| ||||||||||||||||||| ||||||    
T  33865739 gtgtcacaaaattattatatttcccattcaaccatggtgaatgagatgaaaaagttcgaggttgaggtttaataacttcatga 33865821  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 186
Target Start/End: Original strand, 33762589 - 33762702
Alignment:
Q  73 attaccatctttatttgaatccattacagactgtgtcacaaaactacaatgtttcctattaaaccaaggagaatcaggtgaaaaagtttgaggttgaggt 172  Q
    ||||||||||||||||||| ||| ||| |  ||||| |||||| ||   || ||| | || ||||| || |||| || ||||||| || |||||||||||    
T  33762589 attaccatctttatttgaagccagtactggttgtgtaacaaaattattttgcttcttgttcaaccatggtgaatgagttgaaaaaattcgaggttgaggt 33762688  T
Q  173 ttaataacatcatg 186  Q
    |||||||| |||||    
T  33762689 ttaataacttcatg 33762702  T

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Target: scaffold0001 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 260 - 331
Target Start/End: Original strand, 148788 - 148859
Alignment:
Q  260 tgtgtgtgccaatagtttttgacatcattagctgttctacccggaagccttcccgcaatcaatgaccatcta 331  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  148788 tgtgtgtgccaatagttctttacatcattagctgttcttcccggaagccttccagcaatcaatgaccatcta 148859  T

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Target: scaffold0193 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 254 - 360
Target Start/End: Complemental strand, 25295 - 25189
Alignment:
Q  254 ctcaaatgtgtgtgccaatagtttttgacatcattagctgttctacccggaagccttcccgcaatcaatgaccatctatattatatttatccaatatatg 353  Q
    |||||||| |||| |||||||||||| ||||||||||||| ||||||| |||| ||| | |||||||||| ||||||||||||||| ||||  | |||||    
T  25295 ctcaaatgggtgttccaatagtttttcacatcattagctgatctaccctgaagtcttgcagcaatcaatgtccatctatattatatgtatcatacatatg 25196  T
Q  354 agtaagt 360  Q
    |||||||    
T  25195 agtaagt 25189  T

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Target: scaffold0247 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 257 - 330
Target Start/End: Complemental strand, 22228 - 22155
Alignment:
Q  257 aaatgtgtgtgccaatagtttttgacatcattagctgttctacccggaagccttcccgcaatcaatgaccatct 330  Q
    |||||||| | |||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  22228 aaatgtgtattccaatagtttttcacatcattagctgttctacctggaagccttccagcaatcaatgaccatct 22155  T

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Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 260 - 331
Target Start/End: Complemental strand, 5471265 - 5471194
Alignment:
Q  260 tgtgtgtgccaatagtttttgacatcattagctgttctacccggaagccttcccgcaatcaatgaccatcta 331  Q
    ||||||| |||||||||||| |||  ||||||||||||||||||||||||||| ||||||||||||||||||    
T  5471265 tgtgtgttccaatagtttttcacactattagctgttctacccggaagccttccagcaatcaatgaccatcta 5471194  T

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