View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1617-INSERTION-3 (Length: 245)
Name: NF1617-INSERTION-3
Description: NF1617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1617-INSERTION-3 |
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| [»] scaffold0121 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: scaffold0121 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 20118 - 19883
Alignment:
| Q |
8 |
agataatccgatgaattaggttaataaatttatgttaaatccgtgctctaatttgctgctgtgattttgtctctaaattcattgtttttatgaactcgga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
20118 |
agataatccgatgaattaggttaataaatttatgttaaatccgtgctctaattttctgatgtgattttgtctctaaattcattgtttttatgaactcgaa |
20019 |
T |
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| Q |
108 |
ttcgtcttatttataattctgctgcaattgtatgtatgaaatcgataactctgctggttaatactcatcgtaacaacttgtacatagtcttgaatttttg |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20018 |
ttcgtcttatttataattctgctgcaattgtatgtatgaaatcgataactctgttggttaatactcatcgtaacaacttgtacatagtcttgaatttttg |
19919 |
T |
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| Q |
208 |
ttttatttggttcaacagtggatccattaatagggt |
243 |
Q |
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|||||||||||||| |||| |||||||||||||||| |
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| T |
19918 |
ttttatttggttcatcagtagatccattaatagggt |
19883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 245
Target Start/End: Original strand, 14980845 - 14981080
Alignment:
| Q |
10 |
ataatccgatgaattaggttaataaatttatgttaaatccgtgctctaatttgctgctgtgattttgtctctaaattcattgtttttatgaactcggatt |
109 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14980845 |
ataatctgatgaattaggttaataaatttatgttaaatccgtgctctaatttgctgctgtgattttgtctctaaattcattgtttttatgaactcaaatt |
14980944 |
T |
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| Q |
110 |
cgtcttatttataattctgctgcaattgtatgtatgaaatcgataactctgctggttaatactcatcgtaacaacttgtacatagtcttgaatttttgtt |
209 |
Q |
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| T |
14980945 |
cgtcttatttataattctactgcaattgtacgtatgaaatcgataactctgttggttaatactcatcgtaacaacttgtacatagtcttgaatttttgtt |
14981044 |
T |
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| Q |
210 |
ttatttggttcaacagtggatccattaatagggtca |
245 |
Q |
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| T |
14981045 |
ttatttggttcatccgtggatccattaatagggtca |
14981080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 245
Target Start/End: Original strand, 15410321 - 15410556
Alignment:
| Q |
10 |
ataatccgatgaattaggttaataaatttatgttaaatccgtgctctaatttgctgctgtgattttgtctctaaattcattgtttttatgaactcggatt |
109 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15410321 |
ataatctgatgaattaggttaataaatttatgttaaatccgtgctctaatttgctgctgtgattttgtctctaaattcattgtttttatgaactcaaatt |
15410420 |
T |
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| Q |
110 |
cgtcttatttataattctgctgcaattgtatgtatgaaatcgataactctgctggttaatactcatcgtaacaacttgtacatagtcttgaatttttgtt |
209 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15410421 |
cgtcttatttataattctactgcaattgtacgtatgaaatcgataactctgttggttaatactcatcgtaacaacttgtacatagtcttgaatttttgtt |
15410520 |
T |
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| Q |
210 |
ttatttggttcaacagtggatccattaatagggtca |
245 |
Q |
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|||||||||||| | ||||||||||||||||||||| |
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| T |
15410521 |
ttatttggttcatccgtggatccattaatagggtca |
15410556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 245
Target Start/End: Complemental strand, 26014161 - 26013924
Alignment:
| Q |
8 |
agataatccgatgaattaggttaataaatttatgttaaatccgtgctctaatttgctgctgtgattttgtctctaaattcattgtttttatgaactcgga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26014161 |
agataatccgatgaattaggttaataaatttatgttaaatccgtactgtaatttgctgctgtgattttgtctctaaattcattgtttttatgaactcgaa |
26014062 |
T |
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| Q |
108 |
ttcgtcttatttataattctgctgcaattgtatgtatgaaatcgataactctgctggttaatactcatcgtaacaacttgtacatagtcttgaatttttg |
207 |
Q |
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|||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26014061 |
ttcgtcttatttataattttgctgcaattgtacgtatgaaatcgataactctgttggttaatactcatcgtaacaacttgtacataatcttgaatttttg |
26013962 |
T |
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| Q |
208 |
ttttatttggttcaacagtggatccattaatagggtca |
245 |
Q |
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| T |
26013961 |
ttttatttggttcatccgtggatccattaatagggtca |
26013924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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