View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1617-INSERTION-4 (Length: 346)
Name: NF1617-INSERTION-4
Description: NF1617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1617-INSERTION-4 |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0589 (2 HSPs) |
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| [»] scaffold0092 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 346
Target Start/End: Complemental strand, 27019760 - 27019425
Alignment:
| Q |
8 |
cccagatacctaagggactactagcccaagtaattcagctaccagtctcactaaaggtcactgtctgtgcagagatagtggtattttctgctctaataag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27019760 |
cccagatacctaagggactactagcccaagtaattcagctaccagtctcactaaaggtcactgtctgtgcagagatagtggtattttctgctctaataag |
27019661 |
T |
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| Q |
108 |
acactggcagtaccttagccacctagcagataaatccaattattattattgttgtcttgttttttatcctagaattcaggagtgccgttgatggcccatt |
207 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
27019660 |
acaccggcagtaccttagccacctagcagataaatccaattattattattgttgtcttgttttttatccgagaattcaggagtgccgttgatggtccatt |
27019561 |
T |
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| Q |
208 |
tgtgctccttgtattcccctataaaaagggacttgaaccatcaataaaagggaagaaaaattcagcattattttcattttcttagatagcttagtgatag |
307 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27019560 |
tgtgctccttgtatt--cctat-aaaagggacttgaaccatcaataaaagggaagaaaaattcagtattattttcattttcttagatagcttagtgatag |
27019464 |
T |
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| Q |
308 |
tagtagtaacctaacaatttatgttacatcccgtttata |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
27019463 |
tagtagtaacctaacaatttatgttacatcccgtttata |
27019425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 185 - 323
Target Start/End: Complemental strand, 26175660 - 26175523
Alignment:
| Q |
185 |
aggagtgccgttgatggcccatttgtgctccttgtattcccctataaaaagggacttgaaccatcaataaaagggaagaaaaatt-cagcattattttca |
283 |
Q |
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||||||||||||| ||||| || |||||||||||||| ||| ||||||| ||||||||||||||||||||| | |||||||||| ||| ||| ||| || |
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| T |
26175660 |
aggagtgccgttgctggcctatatgtgctccttgtat-cccttataaaa-gggacttgaaccatcaataaatgataagaaaaatttcagtattttttcca |
26175563 |
T |
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| Q |
284 |
ttttcttagatagcttagtgatagtagtagtaacctaaca |
323 |
Q |
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||||||||||||||||||||||||| ||||| ||||||| |
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| T |
26175562 |
ttttcttagatagcttagtgatagtcgtagttccctaaca |
26175523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0589 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: scaffold0589
Description:
Target: scaffold0589; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 147 - 323
Target Start/End: Complemental strand, 1385 - 1211
Alignment:
| Q |
147 |
ttattattattgttgtcttgttttttatcctagaattcaggagtgccgttgatggcccatttgtgctccttgtattcccctataaaaagggacttgaacc |
246 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1385 |
ttattattattgttgtcttgttttt-atcctagaattgaggagtgtcgttgatggcccatttgtgctccttgtattcccctataaaa-gggacttgaacc |
1288 |
T |
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| Q |
247 |
atcaataaaagggaagaaaaattcagcattattttcattttcttagatagcttagtgatagtagtagtaacctaaca |
323 |
Q |
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| T |
1287 |
atcaataaaacataagaaaaattcagtattattttcattttcttagatagcttagtgatagtagtagtaacctaaca |
1211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0589; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 5675 - 5623
Alignment:
| Q |
103 |
ataagacactggcagtaccttagccacctagcagataaatccaattattatta |
155 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5675 |
ataagacactggcagtaccttagccagctagcagataaatccaattattatta |
5623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 109 - 323
Target Start/End: Original strand, 24427601 - 24427815
Alignment:
| Q |
109 |
cactggcagtaccttagccacctagcagataaatccaattattattattgttgtcttgttttttatcctagaattcaggagtgccgttgatggcccattt |
208 |
Q |
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|||||||||||||| ||| ||||||||||||||||| |||| |||||| |||||| |||| |||||| ||| |||||||||||||||||||||||| | |
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| T |
24427601 |
cactggcagtacctctaccagctagcagataaatccaaatattgttattgctgtctt-ttttgtatccttgaaatcaggagtgccgttgatggcccatat |
24427699 |
T |
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| Q |
209 |
gtgctccttgtattcccctataaaaagggacttgaaccatcaataaaagggaagaaaaatt-cagca-ttattttcattttcttagatagcttagtgata |
306 |
Q |
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| ||||||||||||||||||| ||||||| |||||| |||||||||| ||||||| || ||| | || |||| ||||||||||||| ||||||||| |
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| T |
24427700 |
gagctccttgtattcccctat-aaaagggtcttgaatcatcaataaacaacaagaaaatttccagtatttgtttttcttttcttagatagtttagtgata |
24427798 |
T |
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| Q |
307 |
gtagtagtaacctaaca |
323 |
Q |
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||||||||||||||||| |
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| T |
24427799 |
gtagtagtaacctaaca |
24427815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 109 - 324
Target Start/End: Original strand, 24420727 - 24420942
Alignment:
| Q |
109 |
cactggcagtaccttagccacctagcagataaatccaattattattattgttgtcttgttttttatcctagaattcaggagtgccgttgatggcccattt |
208 |
Q |
| |
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|||||||||||||| ||| ||||||||||||||||| |||| |||||| |||||| |||| |||||| ||| ||||||||||||||||||||| || | |
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| T |
24420727 |
cactggcagtacctctaccagctagcagataaatccaaatattgttattgctgtctt-ttttgtatccttgaaatcaggagtgccgttgatggcctatat |
24420825 |
T |
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| Q |
209 |
gtgctccttgtattcccctataaaaagggacttgaaccatcaataaaagggaagaaaaatt-cagca-ttattttcattttcttagatagcttagtgata |
306 |
Q |
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| ||||||||||||||||||| ||||||| |||||| |||||||||| ||||||| || ||| | || |||| ||||||||||||| ||||||||| |
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| T |
24420826 |
gagctccttgtattcccctat-aaaagggtcttgaatcatcaataaacaacaagaaaatttccagtatttgtttttcttttcttagatagtttagtgata |
24420924 |
T |
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| Q |
307 |
gtagtagtaacctaacaa |
324 |
Q |
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|||||||||||||||||| |
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| T |
24420925 |
gtagtagtaacctaacaa |
24420942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 109 - 323
Target Start/End: Complemental strand, 45139086 - 45138875
Alignment:
| Q |
109 |
cactggcagtaccttagccacctagcagataaatccaattattattattgttgtcttgttttttatcctagaattcaggagtgccgttgatggcccattt |
208 |
Q |
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|||||||||||||| ||| ||||||||||||||||| |||| |||||| |||||| ||||||||| ||||||||||||||||||||||||| || | |
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| T |
45139086 |
cactggcagtacctctaccagctagcagataaatccaaatattgttattgctgtctt---ttttatccttgaattcaggagtgccgttgatggcctatat |
45138990 |
T |
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| Q |
209 |
gtgctccttgtattcccctataaaaagggacttgaaccatcaataaaagggaagaaaa-attcagcattattttcattttcttagatagcttagtgatag |
307 |
Q |
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| ||||||||||||||||||| ||||||| |||||| |||||||||| ||||||| |||| ||| ||| ||||||||||||||||||||||| |
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| T |
45138989 |
gagctccttgtattcccctat-aaaagggtcttgaatcatcaataaacaacaagaaaattttcaatatttgttttcttttcttagatagcttagtgataa |
45138891 |
T |
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| Q |
308 |
tagtagtaacctaaca |
323 |
Q |
| |
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|||||||||||||||| |
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| T |
45138890 |
tagtagtaacctaaca |
45138875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0092 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 4337 - 4238
Alignment:
| Q |
8 |
cccagatacctaagggactactagcccaagtaattcagctaccagtctcactaaaggtcactgtctgtgcagagatagtggtattttctgctctaataag |
107 |
Q |
| |
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|||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
4337 |
cccagatacctaagagactaccagcccaagtaattcagctac-agtctcactaaaggtcactgtctgtgcagtgatagtggtattttatgctctaataag |
4239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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