View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1617-INSERTION-7 (Length: 481)

Name: NF1617-INSERTION-7
Description: NF1617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1617-INSERTION-7
NF1617-INSERTION-7
[»] chr2 (3 HSPs)
chr2 (8-481)||(39705880-39706353)
chr2 (20-267)||(11620083-11620330)
chr2 (264-406)||(11620351-11620493)
[»] chr1 (14 HSPs)
chr1 (10-479)||(49063775-49064244)
chr1 (8-479)||(49048721-49049192)
chr1 (23-262)||(47840574-47840813)
chr1 (277-406)||(47840406-47840535)
chr1 (264-406)||(2540908-2541050)
chr1 (20-253)||(47830499-47830732)
chr1 (27-112)||(48005208-48005293)
chr1 (264-406)||(47825606-47825748)
chr1 (277-406)||(47830322-47830451)
chr1 (182-267)||(2540802-2540887)
chr1 (182-267)||(48005363-48005448)
chr1 (182-267)||(49045520-49045605)
chr1 (20-112)||(2540640-2540732)
chr1 (297-402)||(49045659-49045764)
[»] chr3 (8 HSPs)
chr3 (8-474)||(9757246-9757712)
chr3 (20-112)||(20959895-20959987)
chr3 (20-112)||(20973798-20973890)
chr3 (285-407)||(9761066-9761187)
chr3 (21-104)||(30538913-30538996)
chr3 (284-406)||(20960181-20960303)
chr3 (284-406)||(20974086-20974208)
chr3 (182-267)||(9761229-9761314)
[»] scaffold0121 (3 HSPs)
scaffold0121 (8-170)||(39071-39233)
scaffold0121 (20-267)||(34854-35101)
scaffold0121 (285-407)||(35143-35265)
[»] chr8 (2 HSPs)
chr8 (20-262)||(16776357-16776599)
chr8 (264-407)||(16776188-16776331)
[»] chr7 (3 HSPs)
chr7 (268-406)||(22650676-22650814)
chr7 (182-267)||(22650566-22650651)
chr7 (20-120)||(22650404-22650504)


Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 8 - 481
Target Start/End: Original strand, 39705880 - 39706353
Alignment:
Q  8 tatctttctctcgtcccaccccaaaacaacgacaccatgcaattcattgaggctcaccgcaacgccaacgtgcgtgaactcaatgctcagctgactcaaa 107  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39705880 tatctttctctcgtcccaccccaaaacaacgacaccgtgcaattcattgaggctcaccgcaacgccaacgtgcgtgaactcaatgctcagctgactcaaa 39705979  T
Q  108 tcaacagcacactggatgccgagaagaagattggtgatgagctaagcaatttgcacaaggaaacccaggctaagttttggtgggcttgtccggctgatag 207  Q
    |||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  39705980 tcaacagcacactggaggctgagaagaagattggtgatgagctgagcaatttgcacaaggaaacccaggctaagttttggtgggcttgtccggctgatgg 39706079  T
Q  208 tatgaatagggatcaacttgaactattcaagaaggctttggaggagcttaagaaatttgtaattcagcatgctactactcaaactcttccattttttgtt 307  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  39706080 tatgaatagggatcaacttgaattattcaagaaggctttggaggagcttaagaaacttgtaattcagcatgctactattcaaactcttccattttttgtt 39706179  T
Q  308 ggcaacgcttcatcctcgaacatttatctccatcatcagccaattcctcaacaagctcaaatgtttccaccacaaatttttcaaaaccctatgttgcaat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39706180 ggcaacgcttcatcctcgaacatttatctccatcatcagccaattcctcaacaagctcaaatgtttccaccacaaatttttcaaaaccctatgttgcaat 39706279  T
Q  408 tgcagcctcatttgtttgatggatcgatgatgcctcaccatggcttcaataatatggtgtaataatatgttcag 481  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39706280 tgcagcctcatttgtttgatggattgatgatgcctcaccatggcttcaataatatggtgtaataatatgttcag 39706353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 11620083 - 11620330
Alignment:
Q  20 gtcccaccccaaaacaacgacaccatgcaattcattgaggctcaccgcaacgccaacgtgcgtgaactcaatgctcagctgactcaaatcaac-agcaca 118  Q
    ||||||||||||||||| |  |||||||||||||||||||||||||| |  |||| |||| | || ||||||  |||| ||||||| |||||| |||  |    
T  11620083 gtcccaccccaaaacaatggtaccatgcaattcattgaggctcaccgtagtgccagcgtgtgcgagctcaatattcaggtgactcagatcaaccagct-a 11620181  T
Q  119 ctggatgccgagaagaagattggtgatgagctaagcaatttgcacaaggaaacccaggctaagttttggtgggcttgtccggctgatagtatgaataggg 218  Q
    |||||   |||||||||   || ||| ||||| ||||| ||||||||||  ||  || || | |||||||||||| |||| | |||| | ||||||||||    
T  11620182 ctggacatcgagaagaaacgtgctgaagagctgagcaacttgcacaaggcgactgagactcaattttggtgggctggtcccgttgatgggatgaataggg 11620281  T
Q  219 atcaacttgaactattcaagaaggctttggaggagcttaagaaatttgt 267  Q
      ||||||||| |||||||||||||| |||| |||||||||||| ||||    
T  11620282 cccaacttgaattattcaagaaggctctggatgagcttaagaaacttgt 11620330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 264 - 406
Target Start/End: Original strand, 11620351 - 11620493
Alignment:
Q  264 ttgtaattcagcatgctactactcaaactcttccattttttgttggcaacgcttcatcctcgaacatttatctccatcatcagccaattcctcaacaagc 363  Q
    ||||||| |||  |||| |||||||||| ||||| | ||||| ||| |||  ||| ||||| |||||   |||||||||||| |||| ||||| ||||||    
T  11620351 ttgtaatccagggtgctcctactcaaacccttccgtattttgctggaaacagttcgtcctccaacatgcctctccatcatcaaccaaatcctccacaagc 11620450  T
Q  364 tcaaatgtttccaccacaaatttttcaaaaccctatgttgcaa 406  Q
    ||| ||||||||| ||||  ||| ||| ||||| |||||||||    
T  11620451 tcatatgtttccagcacagttttatcagaacccaatgttgcaa 11620493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 479
Target Start/End: Original strand, 49063775 - 49064244
Alignment:
Q  10 tctttctctcgtcccaccccaaaacaacgacaccatgcaattcattgaggctcaccgcaacgccaacgtgcgtgaactcaatgctcagctgactcaaatc 109  Q
    |||||||||| ||||| |||||||| | | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  49063775 tctttctctcatcccaacccaaaacgatggcaccatgcaattcattgaggctcaccgcaatgccaacgtgcgtgaactcaatgctcagctgactcaaatc 49063874  T
Q  110 aacagcacactggatgccgagaagaagattggtgatgagctaagcaatttgcacaaggaaacccaggctaagttttggtgggcttgtccggctgatagta 209  Q
    || | |||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||   | |||| | |    
T  49063875 aataacacgttggatgccgagaagaagattggtgatgagctgagcaatttgcacaaggaaactgaggctaagttttggtgggcttgtgttgttgatggga 49063974  T
Q  210 tgaatagggatcaacttgaactattcaagaaggctttggaggagcttaagaaatttgtaattcagcatgctactactcaaactcttccattttttgttgg 309  Q
    |||||||||||||||||||| |||| ||||| ||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||    
T  49063975 tgaatagggatcaacttgaaatatttaagaaagctttggaggagcttaagaaacttgtaattcagcatgctgctactcgaactcttccattttttgttgg 49064074  T
Q  310 caacgcttcatcctcgaacatttatctccatcatcagccaattcctcaacaagctcaaatgtttccaccacaaatttttcaaaaccctatgttgcaattg 409  Q
    |||| ||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||    
T  49064075 caacacttcatcctcgaacatttatctccatcatcaaccaaatcctcaacaagctgaaatgtttccgccacaaatttttcaaaacgctatgttgcaattg 49064174  T
Q  410 cagcctcatttgtttgatggatcgatgatgcctcaccatggcttcaataatatggtgtaataatatgttc 479  Q
    ||  ||||||| |||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||    
T  49064175 caaactcatttctttgatggctcgatgattcctcaccatgtcttcaataatatggtgtaataatatgttc 49064244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 8 - 479
Target Start/End: Original strand, 49048721 - 49049192
Alignment:
Q  8 tatctttctctcgtcccaccccaaaacaacgacaccatgcaattcattgaggctcaccgcaacgccaacgtgcgtgaactcaatgctcagctgactcaaa 107  Q
    ||||||||||| || ||||| |||||||||| |||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||    
T  49048721 tatctttctcttgtaccaccacaaaacaacggcaccatgcaactcattgaggctcaccgcaatgccaacgttcgtgaactcaatgctcagatgactcaaa 49048820  T
Q  108 tcaacagcacactggatgccgagaagaagattggtgatgagctaagcaatttgcacaaggaaacccaggctaagttttggtgggcttgtccggctgatag 207  Q
    |||||| |||  |||||||||||||||||||||| |||||||| ||| |||| | |||||||||  ||||||| ||||||||||||||||||| |||| |    
T  49048821 tcaacaacacgttggatgccgagaagaagattggcgatgagctgagccattttctcaaggaaacagaggctaatttttggtgggcttgtccggttgatgg 49048920  T
Q  208 tatgaatagggatcaacttgaactattcaagaaggctttggaggagcttaagaaatttgtaattcagcatgctactactcaaactcttccattttttgtt 307  Q
     |||||||  |||||||||||| ||||||| ||||| |||||||||||||||||| || ||||||| |||||||| |||| |||||||||||||||||||    
T  49048921 aatgaataaagatcaacttgaattattcaaaaaggcattggaggagcttaagaaacttctaattcaacatgctacaactcgaactcttccattttttgtt 49049020  T
Q  308 ggcaacgcttcatcctcgaacatttatctccatcatcagccaattcctcaacaagctcaaatgtttccaccacaaatttttcaaaaccctatgttgcaat 407  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||| | ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  49049021 ggcaatgcttcttcctcgaacgtttatctccatcatcagccaaatgctcaacaagctgaaatgttgccaccacaattttttcaaaaccctatgttgcaat 49049120  T
Q  408 tgcagcctcatttgtttgatggatcgatgatgcctcaccatggcttcaataatatggtgtaataatatgttc 479  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  49049121 tgcagcctcatttgtttgatggatcaatgatgcctcaccatggcttcaataatatggtgtaataatatgttc 49049192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 23 - 262
Target Start/End: Complemental strand, 47840813 - 47840574
Alignment:
Q  23 ccaccccaaaacaacgacaccatgcaattcattgaggctcaccgcaacgccaacgtgcgtgaactcaatgctcagctgactcaaatcaacagcacactgg 122  Q
    ||||| ||||||||||  |||||||||||||||||||||||||||| ||| || |||||||| |||||| ||||||||||||| ||||||  |  |||||    
T  47840813 ccaccacaaaacaacggtaccatgcaattcattgaggctcaccgcagcgctaatgtgcgtgagctcaatactcagctgactcagatcaaccacctactgg 47840714  T
Q  123 atgccgagaagaagattggtgatgagctaagcaatttgcacaaggaaacccaggctaagttttggtgggcttgtccggctgatagtatgaatagggatca 222  Q
    |   |||||||||   || ||| ||||| ||  | |||| ||||   ||| ||| | | |||||||||||| |||| | |||| | ||||||||||  ||    
T  47840713 acatcgagaagaaacgtgctgaagagctgagtcacttgcgcaagacgaccgaggatcaattttggtgggctggtcccgttgatgggatgaatagggtcca 47840614  T
Q  223 acttgaactattcaagaaggctttggaggagcttaagaaa 262  Q
    ||||||| |||||||||||||||||| |||| ||||||||    
T  47840613 acttgaattattcaagaaggctttgggggaggttaagaaa 47840574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 277 - 406
Target Start/End: Complemental strand, 47840535 - 47840406
Alignment:
Q  277 tgctactactcaaactcttccattttttgttggcaacgcttcatcctcgaacatttatctccatcatcagccaattcctcaacaagctcaaatgtttcca 376  Q
    |||| |||||||||||||||||||||||||||| || | ||||||||| |||||   |||||||||||| |||| ||||| ||| |||||||||| ||||    
T  47840535 tgctcctactcaaactcttccattttttgttggaaatggttcatcctctaacatccctctccatcatcaaccaaatcctccacaggctcaaatgtatcca 47840436  T
Q  377 ccacaaatttttcaaaaccctatgttgcaa 406  Q
     ||||  ||||||| |||||||||||||||    
T  47840435 acacagttttttcagaaccctatgttgcaa 47840406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 264 - 406
Target Start/End: Original strand, 2540908 - 2541050
Alignment:
Q  264 ttgtaattcagcatgctactactcaaactcttccattttttgttggcaacgcttcatcctcgaacatttatctccatcatcagccaattcctcaacaagc 363  Q
    ||||||| |||  |||| ||||||||||  |||||||||||||||| || | ||||||||| |||||   |||| ||||||| |||| |||||  ||| |    
T  2540908 ttgtaatccaggctgctcctactcaaacctttccattttttgttggaaatggttcatcctctaacatgcctctcgatcatcaaccaaatcctcggcaaac 2541007  T
Q  364 tcaaatgtttccaccacaaatttttcaaaaccctatgttgcaa 406  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||    
T  2541008 tcaaatgtttccagcacaactttttcagaaccctatgttgcaa 2541050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 47830732 - 47830499
Alignment:
Q  20 gtcccaccccaaaacaacgacaccatgcaattcattgaggctcaccgcaacgccaacgtgcgtgaactcaatgctcagctgactcaaatcaa-cagcaca 118  Q
    ||||||||||||||||| |  |||||||||||||||||||||||||| | ||||||| |||| || |||||| ||||||||||||| ||||| ||||  |    
T  47830732 gtcccaccccaaaacaatggtaccatgcaattcattgaggctcaccgtagcgccaacttgcgcgagctcaatactcagctgactcagatcaaccagc-ta 47830634  T
Q  119 ctggatgccgagaagaagattggtgatgagctaagcaatttgcacaaggaaacccaggctaagttttggtgggcttgtccggctgatagtatgaataggg 218  Q
    |||||    ||||||||   || ||| | ||| ||||| |||| |||||  ||| ||  | |||||||||||||| |||| | |||| | |||||||| |    
T  47830633 ctggacatggagaagaaacgtgctgaagggctgagcaacttgcgcaaggcgaccgagagtcagttttggtgggctggtcctgttgatgggatgaatagag 47830534  T
Q  219 atcaacttgaactattcaagaaggctttggaggag 253  Q
      ||||||||| | ||||| |||||||||||||||    
T  47830533 cccaacttgaatttttcaaaaaggctttggaggag 47830499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 48005208 - 48005293
Alignment:
Q  27 cccaaaacaacgacaccatgcaattcattgaggctcaccgcaacgccaacgtgcgtgaactcaatgctcagctgactcaaatcaac 112  Q
    |||||||||| |  |||||||||||||||||||||||||| |  |||||||||||||| || ||| ||||||| ||||| ||||||    
T  48005208 cccaaaacaatggtaccatgcaattcattgaggctcaccgtagtgccaacgtgcgtgagcttaatactcagctaactcagatcaac 48005293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 264 - 406
Target Start/End: Complemental strand, 47825748 - 47825606
Alignment:
Q  264 ttgtaattcagcatgctactactcaaactcttccattttttgttggcaacgcttcatcctcgaacatttatctccatcatcagccaattcctcaacaagc 363  Q
    ||||||| |||  |||| |||||||||   |||||||||||||||| || | ||||||||  |||||   |||| |||||||  ||| |||||  ||| |    
T  47825748 ttgtaatccagagtgctcctactcaaatctttccattttttgttggaaatggttcatcctttaacatgcctctcgatcatcaatcaaatcctccgcaaac 47825649  T
Q  364 tcaaatgtttccaccacaaatttttcaaaaccctatgttgcaa 406  Q
    ||||||||||||| ||||  ||||||||||||| |||||||||    
T  47825648 tcaaatgtttccaacacagttttttcaaaaccccatgttgcaa 47825606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 406
Target Start/End: Complemental strand, 47830451 - 47830322
Alignment:
Q  277 tgctactactcaaactcttccattttttgttggcaacgcttcatcctcgaacatttatctccatcatcagccaattcctcaacaagctcaaatgtttcca 376  Q
    |||| ||||||||||  ||| |||||||| ||||||   ||||||||| |||||   |||||||||||| |||| |||||  ||| ||||||||||||||    
T  47830451 tgctcctactcaaaccattcaattttttggtggcaatagttcatcctctaacatgcctctccatcatcaaccaaatcctccgcaaactcaaatgtttcca 47830352  T
Q  377 ccacaaatttttcaaaaccctatgttgcaa 406  Q
     ||||   |||||| || ||||||||||||    
T  47830351 acacagtattttcagaatcctatgttgcaa 47830322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 2540802 - 2540887
Alignment:
Q  182 ttttggtgggcttgtccggctgatagtatgaatagggatcaacttgaactattcaagaaggctttggaggagcttaagaaatttgt 267  Q
    |||||||||||| || | | |||| | ||||||||||  ||||||||| | ||||| ||||||||||||||| |||||||| ||||    
T  2540802 ttttggtgggctggttccgttgatgggatgaatagggcccaacttgaagttttcaaaaaggctttggaggagattaagaaacttgt 2540887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 48005363 - 48005448
Alignment:
Q  182 ttttggtgggcttgtccggctgatagtatgaatagggatcaacttgaactattcaagaaggctttggaggagcttaagaaatttgt 267  Q
    |||||||||| | |||| | |||| | ||||| ||||  ||||||||| |||||||||| | ||||||||||||||||||| ||||    
T  48005363 ttttggtgggatggtcccgttgatgggatgaacagggtccaacttgaattattcaagaatgatttggaggagcttaagaaacttgt 48005448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 49045520 - 49045605
Alignment:
Q  182 ttttggtgggcttgtccggctgatagtatgaatagggatcaacttgaactattcaagaaggctttggaggagcttaagaaatttgt 267  Q
    ||||||||||||||||||  | || | ||||||||||  ||||||||| |||||||||||  ||||  ||||||||||||| ||||    
T  49045520 ttttggtgggcttgtccgattaatgggatgaatagggcacaacttgaattattcaagaagattttgttggagcttaagaaacttgt 49045605  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 2540640 - 2540732
Alignment:
Q  20 gtcccaccccaaaacaacgacaccatgcaattcattgaggctcaccgcaacgccaacgtgcgtgaactcaatgctcagctgactcaaatcaac 112  Q
    ||||||| | ||||||| |  |||||||||||||||||||||||||| |  ||||||||||| || || |||  ||| |||||||| ||||||    
T  2540640 gtcccactcaaaaacaatggtaccatgcaattcattgaggctcaccgtagtgccaacgtgcgcgagctgaatattcaactgactcagatcaac 2540732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 402
Target Start/End: Original strand, 49045659 - 49045764
Alignment:
Q  297 cattttttgttggcaacgcttcatcctcgaacatttatctccatcatcagccaattcctcaacaagctcaaatgtttccaccacaaatttttcaaaaccc 396  Q
    |||||| |||||| || | || |||||| |||||   ||||||| ||||||||| |||||||||| || | || ||| | |||||||||||||| ||||     
T  49045659 cattttctgttggaaatgatttatcctctaacatccctctccattatcagccaaatcctcaacaaactgagatattttcgccacaaatttttcataacca 49045758  T
Q  397 tatgtt 402  Q
    ||||||    
T  49045759 tatgtt 49045764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 8 - 474
Target Start/End: Complemental strand, 9757712 - 9757246
Alignment:
Q  8 tatctttctctcgtcccaccccaaaacaacgacaccatgcaattcattgaggctcaccgcaacgccaacgtgcgtgaactcaatgctcagctgactcaaa 107  Q
    ||||||||||| || ||||| |||||||||| ||| |||||| ||||||||||||||||||| |||||||| |||||||||||||||| | |||||||||    
T  9757712 tatctttctcttgtaccaccacaaaacaacggcacgatgcaactcattgaggctcaccgcaatgccaacgttcgtgaactcaatgctcggatgactcaaa 9757613  T
Q  108 tcaacagcacactggatgccgagaagaagattggtgatgagctaagcaatttgcacaaggaaacccaggctaagttttggtgggcttgtccggctgatag 207  Q
    |||||| |||||||||||| |||||||||||||  |||||||| ||| |||||| |||||||||  |||| || ||||||||||||||||||| |||| |    
T  9757612 tcaacaacacactggatgctgagaagaagattgacgatgagctgagccatttgctcaaggaaacggaggcaaatttttggtgggcttgtccggttgatgg 9757513  T
Q  208 tatgaatagggatcaacttgaactattcaagaaggctttggaggagcttaagaaatttgtaattcagcatgctactactcaaactcttccattttttgtt 307  Q
     ||||||| ||||||||||||| ||||||| ||||| |||||||||||||||||| || ||||||| |||||||| |||| |||||||||||||||||||    
T  9757512 aatgaataaggatcaacttgaattattcaaaaaggcattggaggagcttaagaaacttctaattcaacatgctacaactcgaactcttccattttttgtt 9757413  T
Q  308 ggcaacgcttcatcctcgaacatttatctccatcatcagccaattcctcaacaagctcaaatgtttccaccacaaatttttcaaaaccctatgttgcaat 407  Q
    ||||| ||||| ||||||||||||||||||||||||||||||| | |||||||| || ||||||||||| ||||  |||||||||| |||||||||||||    
T  9757412 ggcaatgcttcttcctcgaacatttatctccatcatcagccaaatactcaacaatctgaaatgtttccatcacatttttttcaaaatcctatgttgcaat 9757313  T
Q  408 tgcagcctcatttgtttgatggatcgatgatgcctcaccatggcttcaataatatggtgtaataata 474  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9757312 tgcagcctcatttgtttgatggatcaatgatgcctcaccatggcttcaataatatggtgtaataata 9757246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 20959895 - 20959987
Alignment:
Q  20 gtcccaccccaaaacaacgacaccatgcaattcattgaggctcaccgcaacgccaacgtgcgtgaactcaatgctcagctgactcaaatcaac 112  Q
    ||||||||||||||||| |  ||||||||||| |||||||||||||| | |||||||||||| || |||||| ||||||||||||||||||||    
T  20959895 gtcccaccccaaaacaatggtaccatgcaatttattgaggctcaccgaagcgccaacgtgcgcgagctcaatactcagctgactcaaatcaac 20959987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 20973798 - 20973890
Alignment:
Q  20 gtcccaccccaaaacaacgacaccatgcaattcattgaggctcaccgcaacgccaacgtgcgtgaactcaatgctcagctgactcaaatcaac 112  Q
    ||||||||||||||| | |  |||||||||||||||||||||||||| | |||||||||||| || |||||| ||||||||||||||| ||||    
T  20973798 gtcccaccccaaaactatggtaccatgcaattcattgaggctcaccgtagcgccaacgtgcgcgagctcaatactcagctgactcaaaccaac 20973890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 407
Target Start/End: Complemental strand, 9761187 - 9761066
Alignment:
Q  285 ctcaaactcttccattttttgttggcaacgcttcatcctcgaacatttatctccatcatcagccaattcctcaacaagctcaaatgtttccaccacaaat 384  Q
    |||||||| ||||||||| |||||| || | || |||||| ||||||  ||||||| |||||||||| ||||||||| || | ||| || | ||||||||    
T  9761187 ctcaaacttttccattttctgttggtaatgatttatcctctaacattcctctccattatcagccaat-cctcaacaaactaagatgctttcgccacaaat 9761089  T
Q  385 ttttcaaaaccctatgttgcaat 407  Q
    |||| | ||||||||||||||||    
T  9761088 tttttataaccctatgttgcaat 9761066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 30538913 - 30538996
Alignment:
Q  21 tcccaccccaaaacaacgacaccatgcaattcattgaggctcaccgcaacgccaacgtgcgtgaactcaatgctcagctgactc 104  Q
    |||||||||||||||| | ||  |||||||||||||||||  |||| |||||||| |||||  |||||||||||| || |||||    
T  30538913 tcccaccccaaaacaatggcataatgcaattcattgaggcgtaccgtaacgccaaagtgcgcaaactcaatgctctgcagactc 30538996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 406
Target Start/End: Original strand, 20960181 - 20960303
Alignment:
Q  284 actcaaactcttccattttttgttggcaacgcttcatcctcgaacatttatctccatcatcagccaattcctcaacaagctcaaatgtttccaccacaaa 383  Q
    ||||||||  |||| ||||||||||| |||  ||||||||| |||||   ||||||||||   |||| ||||| ||||||||| ||| ||||| || |      
T  20960181 actcaaacctttccgttttttgttggaaacagttcatcctctaacatgcctctccatcatacaccaaatcctccacaagctcagatgcttccagcagagt 20960280  T
Q  384 tttttcaaaaccctatgttgcaa 406  Q
    ||| |||||||||||||||||||    
T  20960281 tttatcaaaaccctatgttgcaa 20960303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 406
Target Start/End: Original strand, 20974086 - 20974208
Alignment:
Q  284 actcaaactcttccattttttgttggcaacgcttcatcctcgaacatttatctccatcatcagccaattcctcaacaagctcaaatgtttccaccacaaa 383  Q
    ||||||||  |||| ||||||||||| | |  ||||||||  |||||   |||||||||||| | || ||||| ||||||||| ||| ||||| ||||      
T  20974086 actcaaacctttccgttttttgttggaagcaattcatcctttaacatgcctctccatcatcaactaaatcctccacaagctcagatgcttccagcacagt 20974185  T
Q  384 tttttcaaaaccctatgttgcaa 406  Q
    ||| ||| |||||||||||||||    
T  20974186 tttatcagaaccctatgttgcaa 20974208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 9761314 - 9761229
Alignment:
Q  182 ttttggtgggcttgtccggctgatagtatgaatagggatcaacttgaactattcaagaaggctttggaggagcttaagaaatttgt 267  Q
    ||||||||||||||||||  | || | |||||||||| || ||||||| |||||||||||  | ||  ||||||||||||| ||||    
T  9761314 ttttggtgggcttgtccgattaatgggatgaatagggctcgacttgaattattcaagaagattgtgatggagcttaagaaacttgt 9761229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 39071 - 39233
Alignment:
Q  8 tatctttctctcgtcccaccccaaaacaacgacaccatgcaattcattgaggctcaccgcaacgccaacgtgcgtgaactcaatgctcagctgactcaaa 107  Q
    |||||||| |||||||||||||||||||| | ||| |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| |||||||||    
T  39071 tatctttccctcgtcccaccccaaaacaatggcactatgcaattcattgaggctaaccgcaatgccaacgtgcgcgaactcaatgctcagttgactcaaa 39170  T
Q  108 tcaacagcacactggatgccgagaagaagattggtgatgagctaagcaatttgcacaaggaaa 170  Q
    |||| | ||   || ||||||||||||| |||||||||||||| |||||||||| ||||||||    
T  39171 tcaataacatgatgcatgccgagaagaaaattggtgatgagctgagcaatttgcgcaaggaaa 39233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 34854 - 35101
Alignment:
Q  20 gtcccaccccaaaacaacgacaccatgcaattcattgaggctcaccgcaacgccaacgtgcgtgaactcaatgctcagctgactcaaatcaacagcacac 119  Q
    |||||||| |||||||||  ||||||| ||||||||||||||||||  |  ||||| ||| |||| || |||||| || ||| ||||||||| | |||||    
T  34854 gtcccaccacaaaacaacagcaccatggaattcattgaggctcaccatagtgccaaagtgtgtgagcttaatgctgagttgattcaaatcaataacacac 34953  T
Q  120 tggatgccgagaagaagattggtgatgagctaagcaatttgcacaaggaaacccaggctaagttttggtgggcttgtccggctgatagtatgaataggga 219  Q
    |||| |  ||||| |||| || ||||||| | |||  ||||  |||||    | ||||| | |||||||||||||||||   || | | ||||||||||     
T  34954 tggacgaggagaaaaagagtgatgatgagttgagccttttgtgcaaggcgttcaaggctcaattttggtgggcttgtccaattggtgggatgaatagggc 35053  T
Q  220 tcaacttgaactattcaagaaggctttggaggagcttaagaaatttgt 267  Q
    |||||||||| |||||||||||  ||| | ||||||||||||| ||||    
T  35054 tcaacttgaattattcaagaagattttagtggagcttaagaaacttgt 35101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 407
Target Start/End: Original strand, 35143 - 35265
Alignment:
Q  285 ctcaaactcttccattttttgttggcaacgcttcatcctcgaacatttatctccatcatcagccaattcctcaacaagctcaaatgtttccaccacaaat 384  Q
    |||||||| || ||||||||| ||| || | || |||||| |||||   ||||||| ||||||||| |||||||||| || ||||||||||||||||| |    
T  35143 ctcaaactttttcattttttgctggtaatgatttatcctctaacatccctctccattatcagccaaatcctcaacaaactgaaatgtttccaccacaatt 35242  T
Q  385 ttttcaaaaccctatgttgcaat 407  Q
    ||||||  ||||||| |||||||    
T  35243 ttttcattaccctatattgcaat 35265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 16776599 - 16776357
Alignment:
Q  20 gtcccaccccaaaacaacgacaccatgcaattcattgaggctcaccgcaacgccaacgtgcgtgaactcaatgctcagctgactcaaatcaa-cagcaca 118  Q
    ||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||| |||| |||||| | ||||||||||| ||||| ||||  |    
T  16776599 gtcccaccccaaaacaatggtaccatgcaattcattgaggctcaccgcaacgccaacgtgtgtgagctcaatacccagctgactcagatcaaccagc-ta 16776501  T
Q  119 ctggatgccgagaagaagattggtgatgagctaagcaatttgcacaaggaaacccaggctaagttttggtgggcttgtccggctgatagtatgaataggg 218  Q
    |||||    ||||||||   || ||| ||||| ||  | |||| |||||  ||| ||||| | |||||||||||| |||| | |||| | ||||||| ||    
T  16776500 ctggacatggagaagaaacgtgctgaagagctgagtcacttgcgcaaggcgaccgaggctcaattttggtgggctggtcccgttgatgggatgaatatgg 16776401  T
Q  219 atcaacttgaactattcaagaaggctttggaggagcttaagaaa 262  Q
      ||||||||| | ||||| |||||||||||||||  |||||||    
T  16776400 cccaacttgaatttttcaaaaaggctttggaggagactaagaaa 16776357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 264 - 407
Target Start/End: Complemental strand, 16776331 - 16776188
Alignment:
Q  264 ttgtaattcagcatgctactactcaaactcttccattttttgttggcaacgcttcatcctcgaacatttatctccatcatcagccaattcctcaacaagc 363  Q
    |||||||||||  |||| ||||||||||  |||||||||||||||| || | ||||||||| |||||   |||||||||||| |||| ||||   ||| |    
T  16776331 ttgtaattcagggtgctcctactcaaacctttccattttttgttggaaatggttcatcctctaacatgcctctccatcatcaaccaaatccttcgcaaac 16776232  T
Q  364 tcaaatgtttccaccacaaatttttcaaaaccctatgttgcaat 407  Q
     |||||||||||| ||||| ||||||| || |||||||| ||||    
T  16776231 ccaaatgtttccagcacaattttttcagaatcctatgttacaat 16776188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 268 - 406
Target Start/End: Original strand, 22650676 - 22650814
Alignment:
Q  268 aattcagcatgctactactcaaactcttccattttttgttggcaacgcttcatcctcgaacatttatctccatcatcagccaattcctcaacaagctcaa 367  Q
    |||||||  ||||||| |||| ||| ||||||||| |||||| || | || |||||| |||||   ||||||| ||||||||| ||||||||||  | |     
T  22650676 aattcagggtgctactgctcacacttttccattttctgttggtaaagatttatcctctaacatccctctccattatcagccaaatcctcaacaaattgag 22650775  T
Q  368 atgtttccaccacaaatttttcaaaaccctatgttgcaa 406  Q
    |||||| | ||||||| |||||| |||||||||||||||    
T  22650776 atgttttcgccacaaaattttcataaccctatgttgcaa 22650814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 22650566 - 22650651
Alignment:
Q  182 ttttggtgggcttgtccggctgatagtatgaatagggatcaacttgaactattcaagaaggctttggaggagcttaagaaatttgt 267  Q
    ||||||||||||| ||||  |||| | ||||||| || ||| |||||| |||||||||||   |||| ||||||||||||| ||||    
T  22650566 ttttggtgggcttatccgattgatggaatgaataaggctcagcttgaattattcaagaagatgttggtggagcttaagaaacttgt 22650651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 22650404 - 22650504
Alignment:
Q  20 gtcccaccccaaaacaacgacaccatgcaattcattgaggctcaccgcaacgccaacgtgcgtgaactcaatgctcagctgactcaaatcaacagcacac 119  Q
    |||||| | ||||||||| |||||||  |||| ||||||||||| || | | |||| ||| |||| |||||||||  | ||| ||||||||||| |||||    
T  22650404 gtcccatcgcaaaacaacaacaccatagaatttattgaggctcatcgtagcaccaaagtgtgtgagctcaatgctatgttgattcaaatcaacaacacac 22650503  T
Q  120 t 120  Q
    |    
T  22650504 t 22650504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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